Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 130 - 180 | 9.7e-11 | PPR repeat family |
| PPR_1 | PF12854 | 164 - 195 | 4.2e-09 | PPR repeat |
| PPR_3 | PF13812 | 164 - 211 | 1.5e-10 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 167 - 215 | 4.6e-14 | PPR repeat family |
| PPR_1 | PF12854 | 198 - 229 | 1.2e-13 | PPR repeat |
| PPR_2 | PF13041 | 201 - 250 | 3e-19 | PPR repeat family |
| PPR | PF01535 | 204 - 234 | 6.2e-08 | PPR repeat |
| PPR_long | PF17177 | 217 - 292 | 7.7e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 225 - 284 | 5.5e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 232 - 265 | 4.9e-10 | PPR repeat |
| PPR_2 | PF13041 | 236 - 285 | 8e-17 | PPR repeat family |
| PPR_1 | PF12854 | 267 - 299 | 7.3e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 473 |
| AccI | GTMKAC | 1 cut(s) | 293 |
| AciI | CCGC | 2 cut(s) | 820, 884 |
| AcsI | RAATTY | 1 cut(s) | 459 |
| AfaI | GTAC | 1 cut(s) | 28 |
| AgsI | TTSAA | 8 cut(s) | 226, 256, 373, 386, 670, 737, 829, 890 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 218, 250 |
| AluBI | AGCT | 2 cut(s) | 496, 770 |
| AluI | AGCT | 2 cut(s) | 496, 770 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AoxI | GGCC | 1 cut(s) | 754 |
| ApeKI | GCWGC | 2 cut(s) | 452, 781 |
| ApoI | RAATTY | 1 cut(s) | 459 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 156 |
| AspS9I | GGNCC | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 2 cut(s) | 457, 505 |
| AvaII | GGWCC | 1 cut(s) | 101 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 19, 51 |
| BbsI | GAAGAC | 1 cut(s) | 374 |
| BbvI | GCAGC | 2 cut(s) | 439, 768 |
| BccI | CCATC | 5 cut(s) | 96, 333, 574, 632, 856 |
| BciVI | GTATCC | 1 cut(s) | 640 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 2 cut(s) | 92, 693 |
| BfuAI | ACCTGC | 1 cut(s) | 473 |
| BfuI | GTATCC | 1 cut(s) | 640 |
| BisI | GCNGC | 2 cut(s) | 453, 782 |
| BlpI | GCTNAGC | 1 cut(s) | 8 |
| BlsI | GCNGC | 2 cut(s) | 454, 783 |
| Bme18I | GGWCC | 1 cut(s) | 101 |
| BmgT120I | GGNCC | 1 cut(s) | 101 |
| BmiI | GGNNCC | 1 cut(s) | 103 |
| BmsI | GCATC | 1 cut(s) | 121 |
| BpiI | GAAGAC | 1 cut(s) | 374 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 119, 151 |
| BpmI | CTGGAG | 1 cut(s) | 497 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 8 |
| BpuEI | CTTGAG | 1 cut(s) | 467 |
| Bse1I | ACTGG | 1 cut(s) | 764 |
| BseGI | GGATG | 3 cut(s) | 136, 243, 867 |
| BseMII | CTCAG | 2 cut(s) | 212, 693 |
| BseNI | ACTGG | 1 cut(s) | 764 |
| BseXI | GCAGC | 2 cut(s) | 439, 768 |
| BsgI | GTGCAG | 1 cut(s) | 438 |
| BshFI | GGCC | 1 cut(s) | 756 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmI | GAATGC | 2 cut(s) | 599, 665 |
| BsnI | GGCC | 1 cut(s) | 756 |
| Bsp143I | GATC | 1 cut(s) | 897 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 8 |
| BspACI | CCGC | 2 cut(s) | 820, 884 |
| BspANI | GGCC | 1 cut(s) | 756 |
| BspCNI | CTCAG | 2 cut(s) | 211, 692 |
| BspLI | GGNNCC | 1 cut(s) | 103 |
| BspMI | ACCTGC | 1 cut(s) | 473 |
| BsrI | ACTGG | 1 cut(s) | 764 |
| BssMI | GATC | 1 cut(s) | 897 |
| BssNAI | GTATAC | 1 cut(s) | 294 |
| Bst1107I | GTATAC | 1 cut(s) | 294 |
| Bst4CI | ACNGT | 2 cut(s) | 635, 712 |
| Bst6I | CTCTTC | 3 cut(s) | 45, 257, 680 |
| BstC8I | GCNNGC | 1 cut(s) | 599 |
| BstDEI | CTNAG | 3 cut(s) | 8, 198, 679 |
| BstF5I | GGATG | 3 cut(s) | 136, 243, 867 |
| BstKTI | GATC | 1 cut(s) | 900 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 1 cut(s) | 897 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 753, 881 |
| BstV1I | GCAGC | 2 cut(s) | 439, 768 |
| BstV2I | GAAGAC | 1 cut(s) | 374 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 475 |
| BstZ17I | GTATAC | 1 cut(s) | 294 |
| BsuI | GTATCC | 1 cut(s) | 640 |
| BsuRI | GGCC | 1 cut(s) | 756 |
| BtsCI | GGATG | 3 cut(s) | 136, 243, 867 |
| BtsI | GCAGTG | 1 cut(s) | 555 |
| BtsIMutI | CAGTG | 2 cut(s) | 555, 757 |
| BveI | ACCTGC | 1 cut(s) | 473 |
| Cac8I | GCNNGC | 1 cut(s) | 599 |
| Cfr13I | GGNCC | 1 cut(s) | 101 |
| Csp6I | GTAC | 1 cut(s) | 27 |
| CviAII | CATG | 5 cut(s) | 61, 139, 149, 517, 785 |
| CviQI | GTAC | 1 cut(s) | 27 |
| DdeI | CTNAG | 3 cut(s) | 8, 198, 679 |
| DpnI | GATC | 1 cut(s) | 899 |
| DpnII | GATC | 1 cut(s) | 897 |
| Eam1104I | CTCTTC | 3 cut(s) | 45, 257, 680 |
| EarI | CTCTTC | 3 cut(s) | 45, 257, 680 |
| Eco47I | GGWCC | 1 cut(s) | 101 |
| FaeI | CATG | 5 cut(s) | 64, 142, 152, 520, 788 |
| FaiI | YATR | 9 cut(s) | 62, 140, 150, 294, 518, 608, 618, 752, 786 |
| FatI | CATG | 5 cut(s) | 60, 138, 148, 516, 784 |
| FblI | GTMKAC | 1 cut(s) | 293 |
| Fnu4HI | GCNGC | 2 cut(s) | 453, 782 |
| FokI | GGATG | 3 cut(s) | 143, 230, 874 |
| Fsp4HI | GCNGC | 2 cut(s) | 453, 782 |
| FspBI | CTAG | 2 cut(s) | 92, 693 |
| GluI | GCNGC | 2 cut(s) | 453, 782 |
| GsuI | CTGGAG | 1 cut(s) | 497 |
| HaeIII | GGCC | 1 cut(s) | 756 |
| Hin1II | CATG | 5 cut(s) | 64, 142, 152, 520, 788 |
| HincII | GTYRAC | 1 cut(s) | 212 |
| HindII | GTYRAC | 1 cut(s) | 212 |
| HinfI | GANTC | 2 cut(s) | 331, 733 |
| HphI | GGTGA | 2 cut(s) | 457, 505 |
| Hpy166II | GTNNAC | 3 cut(s) | 212, 294, 507 |
| Hpy188I | TCNGA | 3 cut(s) | 201, 330, 682 |
| Hpy188III | TCNNGA | 3 cut(s) | 78, 284, 812 |
| Hpy8I | GTNNAC | 3 cut(s) | 212, 294, 507 |
| HpyAV | CCTTC | 4 cut(s) | 186, 412, 835, 851 |
| HpyCH4III | ACNGT | 2 cut(s) | 635, 712 |
| HpyCH4V | TGCA | 6 cut(s) | 455, 537, 597, 642, 747, 784 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 753, 881 |
| HpyF3I | CTNAG | 3 cut(s) | 8, 198, 679 |
| Hsp92II | CATG | 5 cut(s) | 64, 142, 152, 520, 788 |
| Kzo9I | GATC | 1 cut(s) | 897 |
| LmnI | GCTCC | 1 cut(s) | 709 |
| LpnPI | CCDG | 6 cut(s) | 297, 461, 468, 615, 745, 825 |
| Lsp1109I | GCAGC | 2 cut(s) | 439, 768 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeI | CTAG | 2 cut(s) | 92, 693 |
| MaeIII | GTNAC | 1 cut(s) | 715 |
| MalI | GATC | 1 cut(s) | 899 |
| MboI | GATC | 1 cut(s) | 897 |
| MboII | GAAGA | 9 cut(s) | 27, 32, 171, 244, 361, 374, 589, 596, 667 |
| MluCI | AATT | 6 cut(s) | 221, 276, 374, 459, 566, 654 |
| MmeI | TCCRAC | 1 cut(s) | 731 |
| MroXI | GAANNNNTTC | 1 cut(s) | 156 |
| MslI | CAYNNNNRTG | 1 cut(s) | 470 |
| MspA1I | CMGCKG | 1 cut(s) | 496 |
| Mva1269I | GAATGC | 2 cut(s) | 599, 665 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 753, 881 |
| NdeII | GATC | 1 cut(s) | 897 |
| NlaIII | CATG | 5 cut(s) | 64, 142, 152, 520, 788 |
| NlaIV | GGNNCC | 1 cut(s) | 103 |
| PctI | GAATGC | 2 cut(s) | 599, 665 |
| PdmI | GAANNNNTTC | 1 cut(s) | 156 |
| PfeI | GAWTC | 2 cut(s) | 331, 733 |
| PkrI | GCNGC | 2 cut(s) | 454, 783 |
| PspN4I | GGNNCC | 1 cut(s) | 103 |
| PspPI | GGNCC | 1 cut(s) | 101 |
| PvuII | CAGCTG | 1 cut(s) | 496 |
| RsaI | GTAC | 1 cut(s) | 28 |
| RsaNI | GTAC | 1 cut(s) | 27 |
| RseI | CAYNNNNRTG | 1 cut(s) | 470 |
| SatI | GCNGC | 2 cut(s) | 453, 782 |
| Sau3AI | GATC | 1 cut(s) | 897 |
| Sau96I | GGNCC | 1 cut(s) | 101 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| SinI | GGWCC | 1 cut(s) | 101 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 470 |
| SmlI | CTYRAG | 1 cut(s) | 446 |
| SmoI | CTYRAG | 1 cut(s) | 446 |
| Sse9I | AATT | 6 cut(s) | 221, 276, 374, 459, 566, 654 |
| SsiI | CCGC | 2 cut(s) | 820, 884 |
| SspI | AATATT | 1 cut(s) | 109 |
| SspMI | CTAG | 2 cut(s) | 92, 693 |
| TaaI | ACNGT | 2 cut(s) | 635, 712 |
| TaqI | TCGA | 4 cut(s) | 77, 274, 630, 794 |
| TasI | AATT | 6 cut(s) | 221, 276, 374, 459, 566, 654 |
| TfiI | GAWTC | 2 cut(s) | 331, 733 |
| TscAI | CASTG | 2 cut(s) | 562, 764 |
| TseI | GCWGC | 2 cut(s) | 452, 781 |
| TspDTI | ATGAA | 5 cut(s) | 49, 62, 165, 675, 801 |
| TspRI | CASTG | 2 cut(s) | 562, 764 |
| VpaK11BI | GGWCC | 1 cut(s) | 101 |
| XapI | RAATTY | 1 cut(s) | 459 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 95 |
| XmiI | GTMKAC | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 1 cut(s) | 156 |
| XspI | CTAG | 2 cut(s) | 92, 693 |