Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 8 |
| Acc36I | ACCTGC | 2 cut(s) | 359, 1376 |
| AccII | CGCG | 2 cut(s) | 1176, 1240 |
| AccIII | TCCGGA | 1 cut(s) | 348 |
| AciI | CCGC | 6 cut(s) | 983, 1056, 1174, 1184, 1200, 1218 |
| AclWI | GGATC | 2 cut(s) | 928, 1175 |
| AcoI | YGGCCR | 1 cut(s) | 1251 |
| AcsI | RAATTY | 2 cut(s) | 248, 633 |
| AcyI | GRCGYC | 3 cut(s) | 1003, 1115, 1132 |
| AfaI | GTAC | 3 cut(s) | 19, 1194, 1502 |
| AjnI | CCWGG | 1 cut(s) | 240 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 935, 967 |
| AluBI | AGCT | 3 cut(s) | 231, 446, 1402 |
| AluI | AGCT | 3 cut(s) | 231, 446, 1402 |
| Alw26I | GTCTC | 6 cut(s) | 88, 1010, 1021, 1112, 1139, 1358 |
| AlwI | GGATC | 2 cut(s) | 928, 1175 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 937 |
| Ama87I | CYCGRG | 1 cut(s) | 1504 |
| Aor13HI | TCCGGA | 1 cut(s) | 348 |
| AoxI | GGCC | 4 cut(s) | 262, 913, 1100, 1251 |
| ApeKI | GCWGC | 6 cut(s) | 335, 443, 1206, 1209, 1212, 1300 |
| ApoI | RAATTY | 2 cut(s) | 248, 633 |
| AseI | ATTAAT | 1 cut(s) | 356 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 171, 560 |
| AspLEI | GCGC | 5 cut(s) | 9, 1064, 1178, 1217, 1240 |
| AspS9I | GGNCC | 2 cut(s) | 262, 880 |
| AsuC2I | CCSGG | 3 cut(s) | 884, 912, 1129 |
| AsuHPI | GGTGA | 4 cut(s) | 391, 898, 1283, 1408 |
| AvaI | CYCGRG | 1 cut(s) | 1504 |
| AvaII | GGWCC | 1 cut(s) | 880 |
| BanII | GRGCYC | 2 cut(s) | 228, 740 |
| BbsI | GAAGAC | 1 cut(s) | 23 |
| BbvI | GCAGC | 6 cut(s) | 322, 455, 1218, 1221, 1224, 1312 |
| BccI | CCATC | 8 cut(s) | 215, 460, 518, 580, 661, 870, 899, 1383 |
| BceAI | ACGGC | 2 cut(s) | 319, 986 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1146, 1180 |
| BciT130I | CCWGG | 1 cut(s) | 242 |
| BciVI | GTATCC | 1 cut(s) | 526 |
| BclI | TGATCA | 2 cut(s) | 297, 1272 |
| BcnI | CCSGG | 3 cut(s) | 884, 912, 1129 |
| BcoDI | GTCTC | 6 cut(s) | 88, 1010, 1021, 1112, 1139, 1358 |
| BfaI | CTAG | 3 cut(s) | 792, 987, 1154 |
| BfmI | CTRYAG | 4 cut(s) | 441, 502, 1188, 1204 |
| BfoI | RGCGCY | 2 cut(s) | 1065, 1218 |
| BfuAI | ACCTGC | 2 cut(s) | 359, 1376 |
| BfuI | GTATCC | 1 cut(s) | 526 |
| BisI | GCNGC | 9 cut(s) | 336, 444, 1056, 1174, 1207, 1210, 1213, 1218, 1301 |
| BlpI | GCTNAGC | 2 cut(s) | 227, 1340 |
| BlsI | GCNGC | 9 cut(s) | 337, 445, 1057, 1175, 1208, 1211, 1214, 1219, 1302 |
| Bme1390I | CCNGG | 4 cut(s) | 242, 884, 912, 1129 |
| Bme18I | GGWCC | 1 cut(s) | 880 |
| BmeT110I | CYCGRG | 1 cut(s) | 1504 |
| BmgT120I | GGNCC | 2 cut(s) | 262, 880 |
| BmiI | GGNNCC | 3 cut(s) | 263, 739, 882 |
| BmrFI | CCNGG | 4 cut(s) | 242, 884, 912, 1129 |
| BmrI | ACTGGG | 1 cut(s) | 1156 |
| BmsI | GCATC | 3 cut(s) | 136, 470, 982 |
| BmuI | ACTGGG | 1 cut(s) | 1156 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1002 |
| BpiI | GAAGAC | 1 cut(s) | 23 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 134, 166 |
| BpmI | CTGGAG | 4 cut(s) | 992, 1009, 1121, 1440 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 227, 1340 |
| BpuEI | CTTGAG | 1 cut(s) | 896 |
| BpuMI | CCSGG | 3 cut(s) | 884, 912, 1129 |
| Bsa29I | ATCGAT | 1 cut(s) | 903 |
| BsaHI | GRCGYC | 3 cut(s) | 1003, 1115, 1132 |
| BsaI | GGTCTC | 1 cut(s) | 1358 |
| BsaJI | CCNNGG | 4 cut(s) | 241, 741, 968, 1254 |
| BsaWI | WCCGGW | 1 cut(s) | 348 |
| Bse118I | RCCGGY | 5 cut(s) | 853, 999, 1058, 1098, 1234 |
| Bse1I | ACTGG | 4 cut(s) | 1009, 1026, 1162, 1254 |
| Bse3DI | GCAATG | 2 cut(s) | 1378, 1442 |
| BseAI | TCCGGA | 1 cut(s) | 348 |
| BseBI | CCWGG | 1 cut(s) | 242 |
| BseCI | ATCGAT | 1 cut(s) | 903 |
| BseDI | CCNNGG | 4 cut(s) | 241, 741, 968, 1254 |
| BseGI | GGATG | 9 cut(s) | 151, 226, 334, 391, 485, 591, 1080, 1195, 1394 |
| BseMI | GCAATG | 2 cut(s) | 1378, 1442 |
| BseMII | CTCAG | 2 cut(s) | 241, 931 |
| BseNI | ACTGG | 4 cut(s) | 1009, 1026, 1162, 1254 |
| BseRI | GAGGAG | 2 cut(s) | 702, 1376 |
| BseXI | GCAGC | 6 cut(s) | 322, 455, 1218, 1221, 1224, 1312 |
| Bsh1236I | CGCG | 2 cut(s) | 1176, 1240 |
| BshFI | GGCC | 4 cut(s) | 264, 915, 1102, 1253 |
| BshVI | ATCGAT | 1 cut(s) | 903 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1504 |
| BsmAI | GTCTC | 6 cut(s) | 88, 1010, 1021, 1112, 1139, 1358 |
| BsmBI | CGTCTC | 4 cut(s) | 1010, 1021, 1112, 1139 |
| BsnI | GGCC | 4 cut(s) | 264, 915, 1102, 1253 |
| Bso31I | GGTCTC | 1 cut(s) | 1358 |
| BsoBI | CYCGRG | 1 cut(s) | 1504 |
| Bsp1286I | GDGCHC | 2 cut(s) | 228, 740 |
| Bsp13I | TCCGGA | 1 cut(s) | 348 |
| Bsp143I | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 227, 1340 |
| Bsp19I | CCATGG | 1 cut(s) | 741 |
| BspACI | CCGC | 6 cut(s) | 983, 1056, 1174, 1184, 1200, 1218 |
| BspANI | GGCC | 4 cut(s) | 264, 915, 1102, 1253 |
| BspCNI | CTCAG | 2 cut(s) | 240, 930 |
| BspDI | ATCGAT | 1 cut(s) | 903 |
| BspEI | TCCGGA | 1 cut(s) | 348 |
| BspFNI | CGCG | 2 cut(s) | 1176, 1240 |
| BspLI | GGNNCC | 3 cut(s) | 263, 739, 882 |
| BspMAI | CTGCAG | 3 cut(s) | 445, 1192, 1208 |
| BspMI | ACCTGC | 2 cut(s) | 359, 1376 |
| BspPI | GGATC | 2 cut(s) | 928, 1175 |
| BspTNI | GGTCTC | 1 cut(s) | 1358 |
| BsrDI | GCAATG | 2 cut(s) | 1378, 1442 |
| BsrFI | RCCGGY | 5 cut(s) | 853, 999, 1058, 1098, 1234 |
| BsrI | ACTGG | 4 cut(s) | 1009, 1026, 1162, 1254 |
| BssAI | RCCGGY | 5 cut(s) | 853, 999, 1058, 1098, 1234 |
| BssECI | CCNNGG | 4 cut(s) | 241, 741, 968, 1254 |
| BssMI | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| BssNI | GRCGYC | 3 cut(s) | 1003, 1115, 1132 |
| BssT1I | CCWWGG | 1 cut(s) | 741 |
| Bst2UI | CCWGG | 1 cut(s) | 242 |
| Bst4CI | ACNGT | 7 cut(s) | 345, 521, 649, 674, 680, 1073, 1500 |
| Bst6I | CTCTTC | 3 cut(s) | 566, 956, 1444 |
| BstACI | GRCGYC | 3 cut(s) | 1003, 1115, 1132 |
| BstC8I | GCNNGC | 6 cut(s) | 485, 1060, 1143, 1188, 1204, 1236 |
| BstDEI | CTNAG | 3 cut(s) | 227, 917, 1340 |
| BstDSI | CCRYGG | 2 cut(s) | 741, 968 |
| BstEII | GGTNACC | 1 cut(s) | 886 |
| BstF5I | GGATG | 9 cut(s) | 151, 226, 334, 391, 485, 591, 1080, 1195, 1394 |
| BstFNI | CGCG | 2 cut(s) | 1176, 1240 |
| BstH2I | RGCGCY | 2 cut(s) | 1065, 1218 |
| BstHHI | GCGC | 5 cut(s) | 9, 1064, 1178, 1217, 1240 |
| BstKTI | GATC | 8 cut(s) | 300, 721, 907, 936, 1090, 1122, 1183, 1275 |
| BstMAI | GTCTC | 6 cut(s) | 88, 1010, 1021, 1112, 1139, 1358 |
| BstMBI | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1061, 1138, 1212, 1223 |
| BstNI | CCWGG | 1 cut(s) | 242 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1002 |
| BstPI | GGTNACC | 1 cut(s) | 886 |
| BstSCI | CCNGG | 4 cut(s) | 240, 882, 910, 1127 |
| BstSFI | CTRYAG | 4 cut(s) | 441, 502, 1188, 1204 |
| BstUI | CGCG | 2 cut(s) | 1176, 1240 |
| BstV1I | GCAGC | 6 cut(s) | 322, 455, 1218, 1221, 1224, 1312 |
| BstV2I | GAAGAC | 1 cut(s) | 23 |
| BstX2I | RGATCY | 2 cut(s) | 933, 1180 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 607 |
| BstYI | RGATCY | 2 cut(s) | 933, 1180 |
| Bsu15I | ATCGAT | 1 cut(s) | 903 |
| BsuI | GTATCC | 1 cut(s) | 526 |
| BsuRI | GGCC | 4 cut(s) | 264, 915, 1102, 1253 |
| BsuTUI | ATCGAT | 1 cut(s) | 903 |
| BtgI | CCRYGG | 2 cut(s) | 741, 968 |
| BtsCI | GGATG | 9 cut(s) | 151, 226, 334, 391, 485, 591, 1080, 1195, 1394 |
| BtsI | GCAGTG | 1 cut(s) | 438 |
| BtsIMutI | CAGTG | 3 cut(s) | 438, 662, 1247 |
| BveI | ACCTGC | 2 cut(s) | 359, 1376 |
| Cac8I | GCNNGC | 6 cut(s) | 485, 1060, 1143, 1188, 1204, 1236 |
| CaiI | CAGNNNCTG | 1 cut(s) | 937 |
| CfoI | GCGC | 5 cut(s) | 9, 1064, 1178, 1217, 1240 |
| Cfr10I | RCCGGY | 5 cut(s) | 853, 999, 1058, 1098, 1234 |
| Cfr13I | GGNCC | 2 cut(s) | 262, 880 |
| ClaI | ATCGAT | 1 cut(s) | 903 |
| CseI | GACGC | 3 cut(s) | 992, 1104, 1121 |
| Csp6I | GTAC | 3 cut(s) | 18, 1193, 1501 |
| CviAII | CATG | 8 cut(s) | 76, 154, 164, 424, 616, 742, 1278, 1336 |
| CviQI | GTAC | 3 cut(s) | 18, 1193, 1501 |
| DdeI | CTNAG | 3 cut(s) | 227, 917, 1340 |
| DpnI | GATC | 8 cut(s) | 299, 720, 906, 935, 1089, 1121, 1182, 1274 |
| DpnII | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| EaeI | YGGCCR | 1 cut(s) | 1251 |
| Eam1104I | CTCTTC | 3 cut(s) | 566, 956, 1444 |
| EarI | CTCTTC | 3 cut(s) | 566, 956, 1444 |
| EciI | GGCGGA | 2 cut(s) | 972, 1173 |
| Eco130I | CCWWGG | 1 cut(s) | 741 |
| Eco24I | GRGCYC | 2 cut(s) | 228, 740 |
| Eco31I | GGTCTC | 1 cut(s) | 1358 |
| Eco32I | GATATC | 1 cut(s) | 113 |
| Eco47I | GGWCC | 1 cut(s) | 880 |
| Eco88I | CYCGRG | 1 cut(s) | 1504 |
| Eco91I | GGTNACC | 1 cut(s) | 886 |
| EcoO109I | RGGNCCY | 2 cut(s) | 262, 880 |
| EcoO65I | GGTNACC | 1 cut(s) | 886 |
| EcoRI | GAATTC | 1 cut(s) | 633 |
| EcoRII | CCWGG | 1 cut(s) | 240 |
| EcoRV | GATATC | 1 cut(s) | 113 |
| EcoT14I | CCWWGG | 1 cut(s) | 741 |
| EcoT22I | ATGCAT | 1 cut(s) | 834 |
| EcoT38I | GRGCYC | 2 cut(s) | 228, 740 |
| ErhI | CCWWGG | 1 cut(s) | 741 |
| Esp3I | CGTCTC | 4 cut(s) | 1010, 1021, 1112, 1139 |
| FaeI | CATG | 8 cut(s) | 79, 157, 167, 427, 619, 745, 1281, 1339 |
| FatI | CATG | 8 cut(s) | 75, 153, 163, 423, 615, 741, 1277, 1335 |
| FauI | CCCGC | 1 cut(s) | 1207 |
| FauNDI | CATATG | 1 cut(s) | 1483 |
| FbaI | TGATCA | 2 cut(s) | 297, 1272 |
| Fnu4HI | GCNGC | 9 cut(s) | 336, 444, 1056, 1174, 1207, 1210, 1213, 1218, 1301 |
| FokI | GGATG | 9 cut(s) | 158, 233, 341, 398, 492, 598, 1067, 1182, 1401 |
| FriOI | GRGCYC | 2 cut(s) | 228, 740 |
| Fsp4HI | GCNGC | 9 cut(s) | 336, 444, 1056, 1174, 1207, 1210, 1213, 1218, 1301 |
| FspBI | CTAG | 3 cut(s) | 792, 987, 1154 |
| FspI | TGCGCA | 1 cut(s) | 8 |
| GlaI | GCGC | 5 cut(s) | 8, 1063, 1177, 1216, 1239 |
| GluI | GCNGC | 9 cut(s) | 336, 444, 1056, 1174, 1207, 1210, 1213, 1218, 1301 |
| GsuI | CTGGAG | 4 cut(s) | 992, 1009, 1121, 1440 |
| HaeII | RGCGCY | 2 cut(s) | 1065, 1218 |
| HaeIII | GGCC | 4 cut(s) | 264, 915, 1102, 1253 |
| HgaI | GACGC | 3 cut(s) | 992, 1104, 1121 |
| HhaI | GCGC | 5 cut(s) | 9, 1064, 1178, 1217, 1240 |
| Hin1I | GRCGYC | 3 cut(s) | 1003, 1115, 1132 |
| Hin1II | CATG | 8 cut(s) | 79, 157, 167, 427, 619, 745, 1281, 1339 |
| Hin6I | GCGC | 5 cut(s) | 7, 1062, 1176, 1215, 1238 |
| HinP1I | GCGC | 5 cut(s) | 7, 1062, 1176, 1215, 1238 |
| HincII | GTYRAC | 2 cut(s) | 613, 1284 |
| HindII | GTYRAC | 2 cut(s) | 613, 1284 |
| HinfI | GANTC | 1 cut(s) | 622 |
| HphI | GGTGA | 4 cut(s) | 391, 898, 1283, 1408 |
| Hpy166II | GTNNAC | 3 cut(s) | 393, 613, 1284 |
| Hpy188I | TCNGA | 6 cut(s) | 213, 297, 723, 756, 920, 993 |
| Hpy188III | TCNNGA | 3 cut(s) | 93, 349, 1419 |
| Hpy8I | GTNNAC | 3 cut(s) | 393, 613, 1284 |
| Hpy99I | CGWCG | 1 cut(s) | 1120 |
| HpyAV | CCTTC | 5 cut(s) | 201, 275, 295, 1231, 1387 |
| HpyCH4III | ACNGT | 7 cut(s) | 345, 521, 649, 674, 680, 1073, 1500 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1061, 1138, 1212, 1223 |
| HpyF3I | CTNAG | 3 cut(s) | 227, 917, 1340 |
| Hsp92I | GRCGYC | 3 cut(s) | 1003, 1115, 1132 |
| Hsp92II | CATG | 8 cut(s) | 79, 157, 167, 427, 619, 745, 1281, 1339 |
| HspAI | GCGC | 5 cut(s) | 7, 1062, 1176, 1215, 1238 |
| Kpn2I | TCCGGA | 1 cut(s) | 348 |
| KroI | GCCGGC | 2 cut(s) | 1058, 1234 |
| KroNI | GCCGGC | 2 cut(s) | 1060, 1236 |
| Ksp22I | TGATCA | 2 cut(s) | 297, 1272 |
| Kzo9I | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| LmnI | GCTCC | 1 cut(s) | 743 |
| Lsp1109I | GCAGC | 6 cut(s) | 322, 455, 1218, 1221, 1224, 1312 |
| LweI | GCATC | 3 cut(s) | 136, 470, 982 |
| MaeI | CTAG | 3 cut(s) | 792, 987, 1154 |
| MaeIII | GTNAC | 5 cut(s) | 453, 649, 674, 886, 1073 |
| MalI | GATC | 8 cut(s) | 299, 720, 906, 935, 1089, 1121, 1182, 1274 |
| MboI | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| MfeI | CAATTG | 1 cut(s) | 1268 |
| MflI | RGATCY | 2 cut(s) | 933, 1180 |
| MhlI | GDGCHC | 2 cut(s) | 228, 740 |
| MluCI | AATT | 5 cut(s) | 248, 353, 540, 633, 1268 |
| MmeI | TCCRAC | 1 cut(s) | 1016 |
| Mph1103I | ATGCAT | 1 cut(s) | 834 |
| MreI | CGCCGGCG | 1 cut(s) | 1058 |
| MroI | TCCGGA | 1 cut(s) | 348 |
| MroNI | GCCGGC | 2 cut(s) | 1058, 1234 |
| MroXI | GAANNNNTTC | 2 cut(s) | 171, 560 |
| MseI | TTAA | 2 cut(s) | 356, 1413 |
| MslI | CAYNNNNRTG | 1 cut(s) | 74 |
| MspR9I | CCNGG | 4 cut(s) | 242, 884, 912, 1129 |
| MunI | CAATTG | 1 cut(s) | 1268 |
| MvaI | CCWGG | 1 cut(s) | 242 |
| MvnI | CGCG | 2 cut(s) | 1176, 1240 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1061, 1138, 1212, 1223 |
| NaeI | GCCGGC | 2 cut(s) | 1060, 1236 |
| NciI | CCSGG | 3 cut(s) | 884, 912, 1129 |
| NcoI | CCATGG | 1 cut(s) | 741 |
| NdeI | CATATG | 1 cut(s) | 1483 |
| NdeII | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| NgoMIV | GCCGGC | 2 cut(s) | 1058, 1234 |
| NlaIII | CATG | 8 cut(s) | 79, 157, 167, 427, 619, 745, 1281, 1339 |
| NlaIV | GGNNCC | 3 cut(s) | 263, 739, 882 |
| NmeAIII | GCCGAG | 2 cut(s) | 1091, 1279 |
| NmuCI | GTSAC | 2 cut(s) | 886, 1073 |
| NsbI | TGCGCA | 1 cut(s) | 8 |
| NsiI | ATGCAT | 1 cut(s) | 834 |
| PaeR7I | CTCGAG | 1 cut(s) | 1504 |
| PdiI | GCCGGC | 2 cut(s) | 1060, 1236 |
| PdmI | GAANNNNTTC | 2 cut(s) | 171, 560 |
| PfeI | GAWTC | 1 cut(s) | 622 |
| PkrI | GCNGC | 9 cut(s) | 337, 445, 1057, 1175, 1208, 1211, 1214, 1219, 1302 |
| PpuMI | RGGWCCY | 1 cut(s) | 880 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1002 |
| PshBI | ATTAAT | 1 cut(s) | 356 |
| Psp5II | RGGWCCY | 1 cut(s) | 880 |
| Psp6I | CCWGG | 1 cut(s) | 240 |
| PspEI | GGTNACC | 1 cut(s) | 886 |
| PspGI | CCWGG | 1 cut(s) | 240 |
| PspN4I | GGNNCC | 3 cut(s) | 263, 739, 882 |
| PspPI | GGNCC | 2 cut(s) | 262, 880 |
| PspPPI | RGGWCCY | 1 cut(s) | 880 |
| PspXI | VCTCGAGB | 1 cut(s) | 1504 |
| PstI | CTGCAG | 3 cut(s) | 445, 1192, 1208 |
| PstNI | CAGNNNCTG | 1 cut(s) | 937 |
| PsuI | RGATCY | 2 cut(s) | 933, 1180 |
| RsaI | GTAC | 3 cut(s) | 19, 1194, 1502 |
| RsaNI | GTAC | 3 cut(s) | 18, 1193, 1501 |
| RseI | CAYNNNNRTG | 1 cut(s) | 74 |
| SaqAI | TTAA | 2 cut(s) | 356, 1413 |
| SatI | GCNGC | 9 cut(s) | 336, 444, 1056, 1174, 1207, 1210, 1213, 1218, 1301 |
| Sau3AI | GATC | 8 cut(s) | 297, 718, 904, 933, 1087, 1119, 1180, 1272 |
| Sau96I | GGNCC | 2 cut(s) | 262, 880 |
| ScrFI | CCNGG | 4 cut(s) | 242, 884, 912, 1129 |
| SduI | GDGCHC | 2 cut(s) | 228, 740 |
| SfaNI | GCATC | 3 cut(s) | 136, 470, 982 |
| SfcI | CTRYAG | 4 cut(s) | 441, 502, 1188, 1204 |
| Sfr274I | CTCGAG | 1 cut(s) | 1504 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1058 |
| SinI | GGWCC | 1 cut(s) | 880 |
| SlaI | CTCGAG | 1 cut(s) | 1504 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 74 |
| SmlI | CTYRAG | 2 cut(s) | 875, 1504 |
| SmoI | CTYRAG | 2 cut(s) | 875, 1504 |
| Sse9I | AATT | 5 cut(s) | 248, 353, 540, 633, 1268 |
| SsiI | CCGC | 6 cut(s) | 983, 1056, 1174, 1184, 1200, 1218 |
| SspI | AATATT | 1 cut(s) | 124 |
| SspMI | CTAG | 3 cut(s) | 792, 987, 1154 |
| StyD4I | CCNGG | 4 cut(s) | 240, 882, 910, 1127 |
| StyI | CCWWGG | 1 cut(s) | 741 |
| TaaI | ACNGT | 7 cut(s) | 345, 521, 649, 674, 680, 1073, 1500 |
| TaqI | TCGA | 8 cut(s) | 92, 115, 580, 903, 1031, 1090, 1118, 1505 |
| TasI | AATT | 5 cut(s) | 248, 353, 540, 633, 1268 |
| TatI | WGTACW | 2 cut(s) | 1192, 1500 |
| TauI | GCSGC | 3 cut(s) | 1058, 1176, 1220 |
| TfiI | GAWTC | 1 cut(s) | 622 |
| Tru1I | TTAA | 2 cut(s) | 356, 1413 |
| Tru9I | TTAA | 2 cut(s) | 356, 1413 |
| TscAI | CASTG | 3 cut(s) | 445, 669, 1254 |
| TseFI | GTSAC | 2 cut(s) | 886, 1073 |
| TseI | GCWGC | 6 cut(s) | 335, 443, 1206, 1209, 1212, 1300 |
| Tsp45I | GTSAC | 2 cut(s) | 886, 1073 |
| TspDTI | ATGAA | 6 cut(s) | 64, 77, 180, 561, 886, 1431 |
| TspRI | CASTG | 3 cut(s) | 445, 669, 1254 |
| VpaK11BI | GGWCC | 1 cut(s) | 880 |
| VspI | ATTAAT | 1 cut(s) | 356 |
| XapI | RAATTY | 2 cut(s) | 248, 633 |
| XhoI | CTCGAG | 1 cut(s) | 1504 |
| XmnI | GAANNNNTTC | 2 cut(s) | 171, 560 |
| XspI | CTAG | 3 cut(s) | 792, 987, 1154 |
| Zsp2I | ATGCAT | 1 cut(s) | 834 |