Prupe.6G080500_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
5473542 .. 5477309
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G080500.1

Sequence Viewer

Length: 1836 bp
ATGCTGAAGATGATGATGCGAACAAATGCTGCTGCTTCTTCTTATTGCAGCAGCAGCAGCAGCAGAGGTATGCCTCGTCTTCACCCTAACTCCACTGTTGTTTTCGTCAACAATTACTTTGCTTTCTTCTCTCGCTCTCAAGCTTCTAAAGCAAAAAATTCTAGAAGAAGAAGAACCCAAATAGACCAGCTAGCGAAAGACTTTCCCAAAATCACAAATGTTGAGGATGCTCTCAAAGTGTTTGATAGAATGCTTCAATTGCGTCCCCTGCCTCCACTTTTTCGTTTTACTCAAGTCTTGTGCCTAGTTGCGAGATTGAAACAGTATTCGACGGTCATCTCGTCATATAACCAAATGGCTGTGTCGGGAATGGTACCTGATGTTTATGTTCTGAACATTCTCATTAATTGTTTTTGTCATTTGAACCAAATGGGGTCTAGTTTTTCTGTCTTGGGAAAATTATTCAAACTTGGTTTTGAACCAAGTGTCTCTACCGTCAACACTCTAATCAACGGCTTTCTTCTCGAGAATAGAGTGGTTGAGGCAGCAGGAATTTTCAATAAAATGATCAAGGCAGGTAATTGTCAGCCTAATGCTATTACTTTCGGCACGCTAGTCAAAGGCCTTTGCATGAAAGGCAACAATGGTGCTGCTATTCAGTTGCTGAGGAAAATGGAGGAAAGAGCTTTCAAGATTGACCTTATTGTCTATAACACGATTATCGACAGTCTTTGTAAAGATACACTACTTGTTGATGCATTGAACCTCTTCTCAGAAATGATAAGCAGGGGTATTGCCCCAGACGTCAGGACCTATACAGCGTTGATTCAGGGAGCTTGCAAATTAGGCAAGTGGAAAGAAGCTACAAGGTTGTTGAAAGAAATGGAGAGTAAAAATATTTTTCCAAATGTGCACACCTTCACTGTCTTGGTAGACACACTTTGCAAGGAGGGCATGGTTGTGGAAGCAGAAGGTGTGGTCGAAATGATGATTCAAAGGGATATGGAACCTAATGTGGTTACGTACAGTTCACTTATGAATGGTTACTGTTTGCAAGGAGAAATGGACAAGGCGAAAAAGGTTTTTGAACTAATGCTTAGCAAGGGGTCCATGGTTAATGGTTTTAGTTATGCCATATTGATAAATGGATACTGTAACCAGAAAAAAATCGATGAGGCCAGGATGCTTTTTCTGGATATGTCTCGTATGGGACTGGTTCAAGACAACATTATTTGTAACATTATTATGGACGGTTTTTGCAAAGTGGGTAGAACACAGGATGCACAAAAGGTGTTCTTTGAGATGCAGACTTCAGGCCAACTTCCAGATGTTATAACTTATACTGTTCTACTGGATGGCCTGTGTAAAAACCGACAGCTTTCTAAAGCAATGCAATTGTTTCGAGAGATGGAAGGCAAGAAGTTGGATATTGATATTAAGATTTACAGCATTCTTATTAATGGTTTGTGCATAGCTGGAAAAATTAAATCTGCAAGGGATCTCTTTTGTGGTTTATCATCAAAAGGACTTCAACCTGATGTAGTGACACACAATGTAATGATTAATGGACTCTGTCTCGGTGGCCTAACAAGTGAAGCAGAAGAGTTGCTTATTGAAATGGAAGAGAAAGGGTGCTCTCCAAATGATCGGACCTATAACACGATTATCCGCGGGCTTATCAATAACAATGAGACATCAAGGGCGATGGTACTTATTCGACAAATGGTGGAGAAGGGTTTCTCTGCGGATGTGTCAACAATGGAATTGATAGTAAATTTATTGTGCAAAGATGAAGTCGATCCTGCTTTGTTGCCATTGATAAGAAAATCATTGTGA

Protein Analysis

612

Amino Acids

68.32

Weight (kDa)

8.87

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1334
AasI GACNNNNNNGTC 1 cut(s) 704
AatII GACGTC 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 566
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 373
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 1671
AciI CCGC 3 cut(s) 1669, 1671, 1745
AclWI GGATC 2 cut(s) 1506, 1793
AcsI RAATTY 3 cut(s) 157, 552, 1774
AcuI CTGAAG 2 cut(s) 26, 1296
AcyI GRCGYC 1 cut(s) 804
AfaI GTAC 3 cut(s) 375, 1025, 1710
AjnI CCWGG 1 cut(s) 1178
AluBI AGCT 7 cut(s) 143, 190, 686, 836, 863, 1378, 1475
AluI AGCT 7 cut(s) 143, 190, 686, 836, 863, 1378, 1475
Alw21I GWGCWC 2 cut(s) 915, 1637
Alw26I GTCTC 4 cut(s) 493, 1206, 1580, 1685
Alw44I GTGCAC 1 cut(s) 911
AlwI GGATC 2 cut(s) 1506, 1793
AlwNI CAGNNNCTG 1 cut(s) 664
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 5 cut(s) 622, 1176, 1315, 1357, 1582
ApaLI GTGCAC 1 cut(s) 911
ApeKI GCWGC 9 cut(s) 29, 32, 48, 51, 54, 57, 60, 545, 650
ApoI RAATTY 3 cut(s) 157, 552, 1774
ArsI GACNNNNNNTTYG 2 cut(s) 1779, 1811
AseI ATTAAT 3 cut(s) 405, 1458, 1563
Asp700I GAANNNNTTC 2 cut(s) 767, 1736
Asp718I GGTACC 1 cut(s) 373
AspS9I GGNCC 3 cut(s) 810, 1107, 1650
AsuHPI GGTGA 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 3 cut(s) 810, 1107, 1650
BaeGI GKGCMC 1 cut(s) 915
BanI GGYRCC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 2 cut(s) 915, 1637
BbvCI CCTCAGC 1 cut(s) 665
BbvI GCAGC 9 cut(s) 16, 19, 60, 63, 66, 69, 72, 557, 637
BccI CCATC 3 cut(s) 1349, 1402, 1699
BceAI ACGGC 1 cut(s) 529
BcgI CGANNNNNNTGC 2 cut(s) 1382, 1416
BciT130I CCWGG 1 cut(s) 1180
BciVI GTATCC 1 cut(s) 1142
BclI TGATCA 1 cut(s) 567
BcoDI GTCTC 4 cut(s) 493, 1206, 1580, 1685
BfaI CTAG 5 cut(s) 162, 191, 305, 438, 614
BfuAI ACCTGC 1 cut(s) 566
BfuI GTATCC 1 cut(s) 1142
BisI GCNGC 9 cut(s) 30, 33, 49, 52, 55, 58, 61, 546, 651
BlpI GCTNAGC 1 cut(s) 1097
BlsI GCNGC 9 cut(s) 31, 34, 50, 53, 56, 59, 62, 547, 652
Bme1390I CCNGG 1 cut(s) 1180
Bme18I GGWCC 3 cut(s) 810, 1107, 1650
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 3 cut(s) 810, 1107, 1650
BmiI GGNNCC 3 cut(s) 375, 1008, 1108
BmrFI CCNGG 1 cut(s) 1180
BmsI GCATC 6 cut(s) 6, 217, 745, 1173, 1270, 1293
BmtI GCTAGC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 665
Bpu1102I GCTNAGC 1 cut(s) 1097
BpuEI CTTGAG 2 cut(s) 123, 276
Bsa29I ATCGAT 1 cut(s) 1170
BsaAI YACGTR 1 cut(s) 1023
BsaHI GRCGYC 1 cut(s) 804
BsaJI CCNNGG 2 cut(s) 1110, 1669
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse1I ACTGG 2 cut(s) 1218, 1356
Bse3DI GCAATG 1 cut(s) 1395
BseBI CCWGG 1 cut(s) 1180
BseCI ATCGAT 1 cut(s) 1170
BseDI CCNNGG 2 cut(s) 1110, 1669
BseGI GGATG 5 cut(s) 232, 1188, 1285, 1360, 1753
BseMI GCAATG 1 cut(s) 1395
BseMII CTCAG 2 cut(s) 656, 786
BseNI ACTGG 2 cut(s) 1218, 1356
BseSI GKGCMC 1 cut(s) 915
BseXI GCAGC 9 cut(s) 16, 19, 60, 63, 66, 69, 72, 557, 637
Bsh1236I CGCG 1 cut(s) 1671
BshFI GGCC 5 cut(s) 624, 1178, 1317, 1359, 1584
BshNI GGYRCC 1 cut(s) 373
BshVI ATCGAT 1 cut(s) 1170
BsiHKAI GWGCWC 2 cut(s) 915, 1637
BsiHKCI CYCGRG 1 cut(s) 524
BslFI GGGAC 2 cut(s) 249, 1224
BsmAI GTCTC 4 cut(s) 493, 1206, 1580, 1685
BsmFI GGGAC 2 cut(s) 249, 1224
BsmI GAATGC 2 cut(s) 255, 1449
BsnI GGCC 5 cut(s) 624, 1178, 1317, 1359, 1584
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 915, 1637
Bsp143I GATC 4 cut(s) 567, 1498, 1645, 1798
Bsp1720I GCTNAGC 1 cut(s) 1097
Bsp19I CCATGG 1 cut(s) 1110
BspACI CCGC 3 cut(s) 1669, 1671, 1745
BspANI GGCC 5 cut(s) 624, 1178, 1317, 1359, 1584
BspCNI CTCAG 2 cut(s) 657, 785
BspDI ATCGAT 1 cut(s) 1170
BspFNI CGCG 1 cut(s) 1671
BspLI GGNNCC 3 cut(s) 375, 1008, 1108
BspMI ACCTGC 1 cut(s) 566
BspOI GCTAGC 1 cut(s) 194
BspPI GGATC 2 cut(s) 1506, 1793
BspT107I GGYRCC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 1395
BsrI ACTGG 2 cut(s) 1218, 1356
BssECI CCNNGG 2 cut(s) 1110, 1669
BssMI GATC 4 cut(s) 567, 1498, 1645, 1798
BssNI GRCGYC 1 cut(s) 804
BssT1I CCWWGG 1 cut(s) 1110
Bst2UI CCWGG 1 cut(s) 1180
Bst6I CTCTTC 3 cut(s) 773, 1596, 1617
BstACI GRCGYC 1 cut(s) 804
BstBAI YACGTR 1 cut(s) 1023
BstC8I GCNNGC 4 cut(s) 192, 611, 838, 1673
BstDEI CTNAG 3 cut(s) 665, 772, 1097
BstDSI CCRYGG 2 cut(s) 1110, 1669
BstF5I GGATG 5 cut(s) 232, 1188, 1285, 1360, 1753
BstFNI CGCG 1 cut(s) 1671
BstKTI GATC 4 cut(s) 570, 1501, 1648, 1801
BstMAI GTCTC 4 cut(s) 493, 1206, 1580, 1685
BstMBI GATC 4 cut(s) 567, 1498, 1645, 1798
BstMWI GCNNNNNNNGC 9 cut(s) 54, 57, 60, 149, 259, 268, 636, 846, 951
BstNI CCWGG 1 cut(s) 1180
BstSCI CCNGG 1 cut(s) 1178
BstSLI GKGCMC 1 cut(s) 915
BstSNI TACGTA 1 cut(s) 1023
BstUI CGCG 1 cut(s) 1671
BstV1I GCAGC 9 cut(s) 16, 19, 60, 63, 66, 69, 72, 557, 637
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 1498
BstYI RGATCY 1 cut(s) 1498
Bsu15I ATCGAT 1 cut(s) 1170
BsuI GTATCC 1 cut(s) 1142
BsuRI GGCC 5 cut(s) 624, 1178, 1317, 1359, 1584
BsuTUI ATCGAT 1 cut(s) 1170
BtgI CCRYGG 2 cut(s) 1110, 1669
BtgZI GCGATG 1 cut(s) 1718
BtsCI GGATG 5 cut(s) 232, 1188, 1285, 1360, 1753
BtsIMutI CAGTG 2 cut(s) 93, 921
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 4 cut(s) 192, 611, 838, 1673
CaiI CAGNNNCTG 1 cut(s) 664
Cfr13I GGNCC 3 cut(s) 810, 1107, 1650
Cfr42I CCGCGG 1 cut(s) 1672
ClaI ATCGAT 1 cut(s) 1170
CseI GACGC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 374, 1024, 1709
CviAII CATG 3 cut(s) 631, 955, 1111
CviQI GTAC 3 cut(s) 374, 1024, 1709
DdeI CTNAG 3 cut(s) 665, 772, 1097
DpnI GATC 4 cut(s) 569, 1500, 1647, 1800
DpnII GATC 4 cut(s) 567, 1498, 1645, 1798
DrdI GACNNNNNNGTC 1 cut(s) 704
DseDI GACNNNNNNGTC 1 cut(s) 704
Eam1104I CTCTTC 3 cut(s) 773, 1596, 1617
EarI CTCTTC 3 cut(s) 773, 1596, 1617
Eco105I TACGTA 1 cut(s) 1023
Eco130I CCWWGG 1 cut(s) 1110
Eco147I AGGCCT 1 cut(s) 624
Eco47I GGWCC 3 cut(s) 810, 1107, 1650
Eco57I CTGAAG 2 cut(s) 26, 1296
Eco88I CYCGRG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 1178
EcoT14I CCWWGG 1 cut(s) 1110
EcoT22I ATGCAT 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 1110
FaeI CATG 3 cut(s) 634, 958, 1114
FalI AAGNNNNNCTT 4 cut(s) 1280, 1312, 1593, 1625
FaqI GGGAC 2 cut(s) 249, 1224
FatI CATG 3 cut(s) 630, 954, 1110
FauI CCCGC 1 cut(s) 1664
FbaI TGATCA 1 cut(s) 567
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 9 cut(s) 30, 33, 49, 52, 55, 58, 61, 546, 651
FokI GGATG 5 cut(s) 239, 1195, 1292, 1367, 1760
Fsp4HI GCNGC 9 cut(s) 30, 33, 49, 52, 55, 58, 61, 546, 651
FspBI CTAG 5 cut(s) 162, 191, 305, 438, 614
GluI GCNGC 9 cut(s) 30, 33, 49, 52, 55, 58, 61, 546, 651
HaeIII GGCC 5 cut(s) 624, 1178, 1317, 1359, 1584
HgaI GACGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 804
Hin1II CATG 3 cut(s) 634, 958, 1114
HincII GTYRAC 3 cut(s) 109, 499, 1755
HindII GTYRAC 3 cut(s) 109, 499, 1755
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 3 cut(s) 826, 991, 1569
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 6 cut(s) 109, 499, 913, 934, 1031, 1755
Hpy188I TCNGA 3 cut(s) 393, 775, 1650
Hpy8I GTNNAC 6 cut(s) 109, 499, 913, 934, 1031, 1755
Hpy99I CGWCG 1 cut(s) 334
HpyAV CCTTC 4 cut(s) 928, 965, 1406, 1726
HpyCH4IV ACGT 2 cut(s) 804, 1022
HpyF10VI GCNNNNNNNGC 9 cut(s) 54, 57, 60, 149, 259, 268, 636, 846, 951
HpyF3I CTNAG 3 cut(s) 665, 772, 1097
HpySE526I ACGT 2 cut(s) 804, 1022
Hsp92I GRCGYC 1 cut(s) 804
Hsp92II CATG 3 cut(s) 634, 958, 1114
KpnI GGTACC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 567
KspI CCGCGG 1 cut(s) 1672
Kzo9I GATC 4 cut(s) 567, 1498, 1645, 1798
LmnI GCTCC 1 cut(s) 833
Lsp1109I GCAGC 9 cut(s) 16, 19, 60, 63, 66, 69, 72, 557, 637
LweI GCATC 6 cut(s) 6, 217, 745, 1173, 1270, 1293
MaeI CTAG 5 cut(s) 162, 191, 305, 438, 614
MaeII ACGT 2 cut(s) 804, 1022
MaeIII GTNAC 5 cut(s) 1018, 1043, 1154, 1235, 1543
MalI GATC 4 cut(s) 569, 1500, 1647, 1800
MboI GATC 4 cut(s) 567, 1498, 1645, 1798
MfeI CAATTG 2 cut(s) 257, 1394
MflI RGATCY 1 cut(s) 1498
MhlI GDGCHC 2 cut(s) 915, 1637
MlyI GAGTC 1 cut(s) 1563
MmeI TCCRAC 1 cut(s) 1404
Mph1103I ATGCAT 1 cut(s) 760
MroXI GAANNNNTTC 2 cut(s) 767, 1736
MseI TTAA 6 cut(s) 405, 1116, 1437, 1458, 1485, 1563
MslI CAYNNNNRTG 2 cut(s) 959, 1244
MspA1I CMGCKG 1 cut(s) 1671
MspR9I CCNGG 1 cut(s) 1180
MunI CAATTG 2 cut(s) 257, 1394
Mva1269I GAATGC 2 cut(s) 255, 1449
MvaI CCWGG 1 cut(s) 1180
MvnI CGCG 1 cut(s) 1671
MwoI GCNNNNNNNGC 9 cut(s) 54, 57, 60, 149, 259, 268, 636, 846, 951
NcoI CCATGG 1 cut(s) 1110
NdeII GATC 4 cut(s) 567, 1498, 1645, 1798
NheI GCTAGC 1 cut(s) 190
NlaIII CATG 3 cut(s) 634, 958, 1114
NlaIV GGNNCC 3 cut(s) 375, 1008, 1108
NmuCI GTSAC 1 cut(s) 1543
NsiI ATGCAT 1 cut(s) 760
PaeR7I CTCGAG 1 cut(s) 524
PceI AGGCCT 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 338
PctI GAATGC 2 cut(s) 255, 1449
PdmI GAANNNNTTC 2 cut(s) 767, 1736
PfeI GAWTC 2 cut(s) 826, 991
PflFI GACNNNGTC 1 cut(s) 1572
PkrI GCNGC 9 cut(s) 31, 34, 50, 53, 56, 59, 62, 547, 652
PleI GAGTC 1 cut(s) 1563
PpsI GAGTC 1 cut(s) 1563
Ppu21I YACGTR 1 cut(s) 1023
PpuMI RGGWCCY 1 cut(s) 810
PshBI ATTAAT 3 cut(s) 405, 1458, 1563
PsiI TTATAA 1 cut(s) 1334
Psp5II RGGWCCY 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 1178
PspGI CCWGG 1 cut(s) 1178
PspN4I GGNNCC 3 cut(s) 375, 1008, 1108
PspPI GGNCC 3 cut(s) 810, 1107, 1650
PspPPI RGGWCCY 1 cut(s) 810
PstNI CAGNNNCTG 1 cut(s) 664
PsuI RGATCY 1 cut(s) 1498
PsyI GACNNNGTC 1 cut(s) 1572
RsaI GTAC 3 cut(s) 375, 1025, 1710
RsaNI GTAC 3 cut(s) 374, 1024, 1709
RseI CAYNNNNRTG 2 cut(s) 959, 1244
SacII CCGCGG 1 cut(s) 1672
SaqAI TTAA 6 cut(s) 405, 1116, 1437, 1458, 1485, 1563
SatI GCNGC 9 cut(s) 30, 33, 49, 52, 55, 58, 61, 546, 651
Sau3AI GATC 4 cut(s) 567, 1498, 1645, 1798
Sau96I GGNCC 3 cut(s) 810, 1107, 1650
SchI GAGTC 1 cut(s) 1563
ScrFI CCNGG 1 cut(s) 1180
SduI GDGCHC 2 cut(s) 915, 1637
SfaNI GCATC 6 cut(s) 6, 217, 745, 1173, 1270, 1293
Sfr274I CTCGAG 1 cut(s) 524
Sfr303I CCGCGG 1 cut(s) 1672
SgrBI CCGCGG 1 cut(s) 1672
SinI GGWCC 3 cut(s) 810, 1107, 1650
SlaI CTCGAG 1 cut(s) 524
SmiMI CAYNNNNRTG 2 cut(s) 959, 1244
SmlI CTYRAG 3 cut(s) 138, 291, 524
SmoI CTYRAG 3 cut(s) 138, 291, 524
SnaBI TACGTA 1 cut(s) 1023
SseBI AGGCCT 1 cut(s) 624
SsiI CCGC 3 cut(s) 1669, 1671, 1745
SspI AATATT 1 cut(s) 898
SspMI CTAG 5 cut(s) 162, 191, 305, 438, 614
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 1 cut(s) 1178
StyI CCWWGG 1 cut(s) 1110
TaiI ACGT 2 cut(s) 807, 1025
TaqI TCGA 8 cut(s) 329, 525, 723, 981, 1170, 1402, 1717, 1797
TfiI GAWTC 2 cut(s) 826, 991
Tru1I TTAA 6 cut(s) 405, 1116, 1437, 1458, 1485, 1563
Tru9I TTAA 6 cut(s) 405, 1116, 1437, 1458, 1485, 1563
TscAI CASTG 2 cut(s) 100, 928
TseFI GTSAC 1 cut(s) 1543
TseI GCWGC 9 cut(s) 29, 32, 48, 51, 54, 57, 60, 545, 650
Tsp45I GTSAC 1 cut(s) 1543
TspDTI ATGAA 3 cut(s) 647, 1052, 1806
TspRI CASTG 2 cut(s) 100, 928
Tth111I GACNNNGTC 1 cut(s) 1572
VneI GTGCAC 1 cut(s) 911
VpaK11BI GGWCC 3 cut(s) 810, 1107, 1650
VspI ATTAAT 3 cut(s) 405, 1458, 1563
XapI RAATTY 3 cut(s) 157, 552, 1774
XbaI TCTAGA 1 cut(s) 161
XhoI CTCGAG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 2 cut(s) 767, 1736
XspI CTAG 5 cut(s) 162, 191, 305, 438, 614
ZraI GACGTC 1 cut(s) 805
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.