Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 6 - 123 | 1.3e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 7 - 58 | 6.6e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 19 - 67 | 4.6e-17 | PPR repeat family |
| PPR_1 | PF12854 | 20 - 47 | 5.8e-06 | PPR repeat |
| PPR | PF01535 | 22 - 49 | 1.8e-06 | PPR repeat |
| PPR_3 | PF13812 | 45 - 100 | 6.4e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 50 - 81 | 3.8e-15 | PPR repeat |
| PPR_2 | PF13041 | 53 - 101 | 2.3e-17 | PPR repeat family |
| PPR | PF01535 | 56 - 85 | 1.5e-09 | PPR repeat |
| TPR_24 | PF23276 | 56 - 149 | 1.3e-11 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 87 - 117 | 7.2e-07 | PPR repeat |
| PPR_3 | PF13812 | 112 - 168 | 5.6e-13 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 121 - 148 | 2.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 124 - 172 | 7.2e-19 | PPR repeat family |
| PPR | PF01535 | 126 - 156 | 2.6e-06 | PPR repeat |
| TPR_24 | PF23276 | 138 - 237 | 5.3e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 154 - 186 | 2.1e-15 | PPR repeat |
| PPR_2 | PF13041 | 162 - 206 | 3e-16 | PPR repeat family |
| PPR | PF01535 | 162 - 191 | 2.1e-10 | PPR repeat |
| PPR_2 | PF13041 | 197 - 232 | 8.3e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 536 |
| AclWI | GGATC | 1 cut(s) | 731 |
| AcoI | YGGCCR | 1 cut(s) | 253 |
| AfaI | GTAC | 1 cut(s) | 468 |
| AgsI | TTSAA | 5 cut(s) | 62, 130, 272, 398, 656 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 693, 725 |
| AluBI | AGCT | 1 cut(s) | 413 |
| AluI | AGCT | 1 cut(s) | 413 |
| Alw26I | GTCTC | 1 cut(s) | 640 |
| AlwI | GGATC | 1 cut(s) | 731 |
| AoxI | GGCC | 1 cut(s) | 253 |
| ApeKI | GCWGC | 1 cut(s) | 570 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 153 |
| AspS9I | GGNCC | 1 cut(s) | 588 |
| AvaII | GGWCC | 1 cut(s) | 588 |
| BalI | TGGCCA | 1 cut(s) | 255 |
| BanII | GRGCYC | 1 cut(s) | 47 |
| BbsI | GAAGAC | 1 cut(s) | 433 |
| BbvI | GCAGC | 1 cut(s) | 557 |
| BccI | CCATC | 2 cut(s) | 182, 575 |
| BceAI | ACGGC | 1 cut(s) | 736 |
| BcoDI | GTCTC | 1 cut(s) | 640 |
| BfaI | CTAG | 1 cut(s) | 368 |
| BfmI | CTRYAG | 1 cut(s) | 429 |
| BisI | GCNGC | 1 cut(s) | 571 |
| BlsI | GCNGC | 1 cut(s) | 572 |
| Bme18I | GGWCC | 1 cut(s) | 588 |
| BmgT120I | GGNCC | 1 cut(s) | 588 |
| BmiI | GGNNCC | 1 cut(s) | 46 |
| BmsI | GCATC | 4 cut(s) | 283, 641, 676, 698 |
| BpiI | GAAGAC | 1 cut(s) | 433 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 428, 460 |
| BpmI | CTGGAG | 1 cut(s) | 561 |
| Bsa29I | ATCGAT | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 607 |
| BseCI | ATCGAT | 1 cut(s) | 108 |
| BseDI | CCNNGG | 2 cut(s) | 48, 607 |
| BseMII | CTCAG | 2 cut(s) | 539, 693 |
| BseXI | GCAGC | 1 cut(s) | 557 |
| BseYI | CCCAGC | 1 cut(s) | 413 |
| BshFI | GGCC | 1 cut(s) | 255 |
| BshVI | ATCGAT | 1 cut(s) | 108 |
| BsiSI | CCGG | 1 cut(s) | 740 |
| BsmAI | GTCTC | 1 cut(s) | 640 |
| BsnI | GGCC | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 47 |
| Bsp143I | GATC | 4 cut(s) | 25, 105, 109, 736 |
| Bsp19I | CCATGG | 1 cut(s) | 48 |
| BspACI | CCGC | 1 cut(s) | 536 |
| BspANI | GGCC | 1 cut(s) | 255 |
| BspCNI | CTCAG | 2 cut(s) | 540, 692 |
| BspDI | ATCGAT | 1 cut(s) | 108 |
| BspHI | TCATGA | 1 cut(s) | 767 |
| BspLI | GGNNCC | 1 cut(s) | 46 |
| BspMAI | CTGCAG | 1 cut(s) | 433 |
| BspPI | GGATC | 1 cut(s) | 731 |
| BssECI | CCNNGG | 2 cut(s) | 48, 607 |
| BssMI | GATC | 4 cut(s) | 25, 105, 109, 736 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst4CI | ACNGT | 2 cut(s) | 166, 231 |
| BstDEI | CTNAG | 4 cut(s) | 338, 548, 679, 723 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstKTI | GATC | 4 cut(s) | 28, 108, 112, 739 |
| BstMAI | GTCTC | 1 cut(s) | 640 |
| BstMBI | GATC | 4 cut(s) | 25, 105, 109, 736 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 638 |
| BstSFI | CTRYAG | 1 cut(s) | 429 |
| BstV1I | GCAGC | 1 cut(s) | 557 |
| BstV2I | GAAGAC | 1 cut(s) | 433 |
| BstX2I | RGATCY | 1 cut(s) | 736 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 585 |
| BstYI | RGATCY | 1 cut(s) | 736 |
| Bsu15I | ATCGAT | 1 cut(s) | 108 |
| BsuRI | GGCC | 1 cut(s) | 255 |
| BsuTUI | ATCGAT | 1 cut(s) | 108 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| CciI | TCATGA | 1 cut(s) | 767 |
| Cfr13I | GGNCC | 1 cut(s) | 588 |
| ClaI | ATCGAT | 1 cut(s) | 108 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 1 cut(s) | 467 |
| CviAII | CATG | 3 cut(s) | 49, 503, 768 |
| CviJI | RGCY | 9 cut(s) | 45, 116, 249, 255, 413, 472, 570, 641, 743 |
| CviKI_1 | RGCY | 9 cut(s) | 45, 116, 249, 255, 413, 472, 570, 641, 743 |
| CviQI | GTAC | 1 cut(s) | 467 |
| DdeI | CTNAG | 4 cut(s) | 338, 548, 679, 723 |
| DpnI | GATC | 4 cut(s) | 27, 107, 111, 738 |
| DpnII | GATC | 4 cut(s) | 25, 105, 109, 736 |
| EaeI | YGGCCR | 1 cut(s) | 253 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| Eco24I | GRGCYC | 1 cut(s) | 47 |
| Eco47I | GGWCC | 1 cut(s) | 588 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| EcoT22I | ATGCAT | 1 cut(s) | 691 |
| EcoT38I | GRGCYC | 1 cut(s) | 47 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 3 cut(s) | 52, 506, 771 |
| FatI | CATG | 3 cut(s) | 48, 502, 767 |
| FauNDI | CATATG | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 1 cut(s) | 571 |
| FriOI | GRGCYC | 1 cut(s) | 47 |
| Fsp4HI | GCNGC | 1 cut(s) | 571 |
| FspBI | CTAG | 1 cut(s) | 368 |
| GluI | GCNGC | 1 cut(s) | 571 |
| GsaI | CCCAGC | 1 cut(s) | 417 |
| GsuI | CTGGAG | 1 cut(s) | 561 |
| HaeIII | GGCC | 1 cut(s) | 255 |
| HapII | CCGG | 1 cut(s) | 740 |
| HgaI | GACGC | 1 cut(s) | 128 |
| Hin1II | CATG | 3 cut(s) | 52, 506, 771 |
| HinfI | GANTC | 4 cut(s) | 425, 499, 668, 764 |
| HpaII | CCGG | 1 cut(s) | 740 |
| Hpy166II | GTNNAC | 1 cut(s) | 382 |
| Hpy188I | TCNGA | 1 cut(s) | 608 |
| Hpy188III | TCNNGA | 3 cut(s) | 578, 656, 768 |
| Hpy8I | GTNNAC | 1 cut(s) | 382 |
| Hpy99I | CGWCG | 1 cut(s) | 144 |
| HpyAV | CCTTC | 2 cut(s) | 392, 622 |
| HpyCH4III | ACNGT | 2 cut(s) | 166, 231 |
| HpyCH4V | TGCA | 6 cut(s) | 93, 198, 244, 408, 431, 689 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 638 |
| HpyF3I | CTNAG | 4 cut(s) | 338, 548, 679, 723 |
| Hsp92II | CATG | 3 cut(s) | 52, 506, 771 |
| Kzo9I | GATC | 4 cut(s) | 25, 105, 109, 736 |
| LmnI | GCTCC | 1 cut(s) | 50 |
| LpnPI | CCDG | 6 cut(s) | 98, 323, 399, 432, 591, 753 |
| Lsp1109I | GCAGC | 1 cut(s) | 557 |
| LweI | GCATC | 4 cut(s) | 283, 641, 676, 698 |
| MaeI | CTAG | 1 cut(s) | 368 |
| MaeIII | GTNAC | 1 cut(s) | 166 |
| MalI | GATC | 4 cut(s) | 27, 107, 111, 738 |
| MboI | GATC | 4 cut(s) | 25, 105, 109, 736 |
| MboII | GAAGA | 1 cut(s) | 433 |
| MflI | RGATCY | 1 cut(s) | 736 |
| MhlI | GDGCHC | 1 cut(s) | 47 |
| MlsI | TGGCCA | 1 cut(s) | 255 |
| MluCI | AATT | 3 cut(s) | 332, 359, 701 |
| MluNI | TGGCCA | 1 cut(s) | 255 |
| MlyI | GAGTC | 1 cut(s) | 677 |
| MmeI | TCCRAC | 1 cut(s) | 566 |
| MnlI | CCTC | 4 cut(s) | 201, 430, 474, 602 |
| Mox20I | TGGCCA | 1 cut(s) | 255 |
| Mph1103I | ATGCAT | 1 cut(s) | 691 |
| MroXI | GAANNNNTTC | 1 cut(s) | 153 |
| MscI | TGGCCA | 1 cut(s) | 255 |
| MseI | TTAA | 4 cut(s) | 81, 527, 617, 758 |
| Msp20I | TGGCCA | 1 cut(s) | 255 |
| MspI | CCGG | 1 cut(s) | 740 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 638 |
| NcoI | CCATGG | 1 cut(s) | 48 |
| NdeI | CATATG | 1 cut(s) | 240 |
| NdeII | GATC | 4 cut(s) | 25, 105, 109, 736 |
| NlaIII | CATG | 3 cut(s) | 52, 506, 771 |
| NlaIV | GGNNCC | 1 cut(s) | 46 |
| NsiI | ATGCAT | 1 cut(s) | 691 |
| PagI | TCATGA | 1 cut(s) | 767 |
| PdmI | GAANNNNTTC | 1 cut(s) | 153 |
| PfeI | GAWTC | 3 cut(s) | 425, 499, 764 |
| PkrI | GCNGC | 1 cut(s) | 572 |
| PleI | GAGTC | 1 cut(s) | 676 |
| PpsI | GAGTC | 1 cut(s) | 676 |
| PspFI | CCCAGC | 1 cut(s) | 413 |
| PspN4I | GGNNCC | 1 cut(s) | 46 |
| PspPI | GGNCC | 1 cut(s) | 588 |
| PstI | CTGCAG | 1 cut(s) | 433 |
| PsuI | RGATCY | 1 cut(s) | 736 |
| RsaI | GTAC | 1 cut(s) | 468 |
| RsaNI | GTAC | 1 cut(s) | 467 |
| SaqAI | TTAA | 4 cut(s) | 81, 527, 617, 758 |
| SatI | GCNGC | 1 cut(s) | 571 |
| Sau3AI | GATC | 4 cut(s) | 25, 105, 109, 736 |
| Sau96I | GGNCC | 1 cut(s) | 588 |
| SchI | GAGTC | 1 cut(s) | 677 |
| SduI | GDGCHC | 1 cut(s) | 47 |
| SetI | ASST | 4 cut(s) | 403, 415, 441, 593 |
| SfaNI | GCATC | 4 cut(s) | 283, 641, 676, 698 |
| SfcI | CTRYAG | 1 cut(s) | 429 |
| SinI | GGWCC | 1 cut(s) | 588 |
| Sse9I | AATT | 3 cut(s) | 332, 359, 701 |
| SsiI | CCGC | 1 cut(s) | 536 |
| SspMI | CTAG | 1 cut(s) | 368 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 2 cut(s) | 166, 231 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 3 cut(s) | 332, 359, 701 |
| TatI | WGTACW | 1 cut(s) | 466 |
| TfiI | GAWTC | 3 cut(s) | 425, 499, 764 |
| Tru1I | TTAA | 4 cut(s) | 81, 527, 617, 758 |
| Tru9I | TTAA | 4 cut(s) | 81, 527, 617, 758 |
| TseI | GCWGC | 1 cut(s) | 570 |
| TspDTI | ATGAA | 3 cut(s) | 362, 491, 756 |
| TspGWI | ACGGA | 1 cut(s) | 99 |
| VpaK11BI | GGWCC | 1 cut(s) | 588 |
| XmnI | GAANNNNTTC | 1 cut(s) | 153 |
| XspI | CTAG | 1 cut(s) | 368 |
| Zsp2I | ATGCAT | 1 cut(s) | 691 |