Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 62 - 93 | 2.5e-06 | PPR repeat family |
| PPR_1 | PF12854 | 63 - 87 | 5.8e-06 | PPR repeat |
| PPR_3 | PF13812 | 63 - 105 | 2.7e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 94 - 123 | 1e-05 | PPR repeat |
| PPR_2 | PF13041 | 95 - 144 | 7.4e-16 | PPR repeat family |
| PPR_1 | PF12854 | 126 - 147 | 2e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 152 |
| AciI | CCGC | 1 cut(s) | 233 |
| AfaI | GTAC | 1 cut(s) | 164 |
| AgsI | TTSAA | 1 cut(s) | 325 |
| AluBI | AGCT | 2 cut(s) | 185, 457 |
| AluI | AGCT | 2 cut(s) | 185, 457 |
| Aor13HI | TCCGGA | 1 cut(s) | 152 |
| AoxI | GGCC | 2 cut(s) | 294, 436 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 356 |
| BccI | CCATC | 3 cut(s) | 211, 250, 314 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BciVI | GTATCC | 3 cut(s) | 149, 160, 322 |
| BfmI | CTRYAG | 1 cut(s) | 298 |
| BfuI | GTATCC | 3 cut(s) | 149, 160, 322 |
| BisI | GCNGC | 1 cut(s) | 234 |
| BlsI | GCNGC | 1 cut(s) | 235 |
| BmsI | GCATC | 2 cut(s) | 260, 334 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| BsaWI | WCCGGW | 1 cut(s) | 152 |
| Bse1I | ACTGG | 1 cut(s) | 439 |
| Bse3DI | GCAATG | 2 cut(s) | 354, 436 |
| BseAI | TCCGGA | 1 cut(s) | 152 |
| BseGI | GGATG | 1 cut(s) | 275 |
| BseMI | GCAATG | 2 cut(s) | 354, 436 |
| BseMII | CTCAG | 2 cut(s) | 270, 375 |
| BseNI | ACTGG | 1 cut(s) | 439 |
| Bsh1285I | CGRYCG | 1 cut(s) | 142 |
| BshFI | GGCC | 2 cut(s) | 296, 438 |
| BsiEI | CGRYCG | 1 cut(s) | 142 |
| BsiSI | CCGG | 1 cut(s) | 153 |
| BsnI | GGCC | 2 cut(s) | 296, 438 |
| Bsp13I | TCCGGA | 1 cut(s) | 152 |
| Bsp143I | GATC | 1 cut(s) | 139 |
| BspACI | CCGC | 1 cut(s) | 233 |
| BspANI | GGCC | 2 cut(s) | 296, 438 |
| BspCNI | CTCAG | 2 cut(s) | 271, 374 |
| BspEI | TCCGGA | 1 cut(s) | 152 |
| BsrDI | GCAATG | 2 cut(s) | 354, 436 |
| BsrI | ACTGG | 1 cut(s) | 439 |
| BssMI | GATC | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 1 cut(s) | 317 |
| Bst6I | CTCTTC | 1 cut(s) | 362 |
| BstC8I | GCNNGC | 1 cut(s) | 275 |
| BstDEI | CTNAG | 4 cut(s) | 181, 248, 279, 361 |
| BstF5I | GGATG | 1 cut(s) | 275 |
| BstKTI | GATC | 1 cut(s) | 142 |
| BstMBI | GATC | 1 cut(s) | 139 |
| BstMCI | CGRYCG | 1 cut(s) | 142 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 435 |
| BstSFI | CTRYAG | 1 cut(s) | 298 |
| BsuI | GTATCC | 3 cut(s) | 149, 160, 322 |
| BsuRI | GGCC | 2 cut(s) | 296, 438 |
| BtsCI | GGATG | 1 cut(s) | 275 |
| BtsI | GCAGTG | 1 cut(s) | 228 |
| BtsIMutI | CAGTG | 2 cut(s) | 228, 446 |
| Cac8I | GCNNGC | 1 cut(s) | 275 |
| Csp6I | GTAC | 1 cut(s) | 163 |
| CviAII | CATG | 2 cut(s) | 214, 419 |
| CviJI | RGCY | 8 cut(s) | 185, 207, 236, 277, 283, 296, 438, 457 |
| CviKI_1 | RGCY | 8 cut(s) | 185, 207, 236, 277, 283, 296, 438, 457 |
| CviQI | GTAC | 1 cut(s) | 163 |
| DdeI | CTNAG | 4 cut(s) | 181, 248, 279, 361 |
| DpnI | GATC | 1 cut(s) | 141 |
| DpnII | GATC | 1 cut(s) | 139 |
| Eam1104I | CTCTTC | 1 cut(s) | 362 |
| EarI | CTCTTC | 1 cut(s) | 362 |
| FaeI | CATG | 2 cut(s) | 217, 422 |
| FatI | CATG | 2 cut(s) | 213, 418 |
| Fnu4HI | GCNGC | 1 cut(s) | 234 |
| FokI | GGATG | 1 cut(s) | 282 |
| Fsp4HI | GCNGC | 1 cut(s) | 234 |
| GluI | GCNGC | 1 cut(s) | 234 |
| HaeIII | GGCC | 2 cut(s) | 296, 438 |
| HapII | CCGG | 1 cut(s) | 153 |
| Hin1II | CATG | 2 cut(s) | 217, 422 |
| HinfI | GANTC | 1 cut(s) | 415 |
| HpaII | CCGG | 1 cut(s) | 153 |
| Hpy188I | TCNGA | 2 cut(s) | 139, 364 |
| Hpy188III | TCNNGA | 1 cut(s) | 153 |
| HpyAV | CCTTC | 3 cut(s) | 80, 97, 319 |
| HpyCH4III | ACNGT | 1 cut(s) | 317 |
| HpyCH4IV | ACGT | 5 cut(s) | 75, 92, 132, 288, 393 |
| HpyCH4V | TGCA | 5 cut(s) | 213, 241, 347, 389, 429 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 435 |
| HpyF3I | CTNAG | 4 cut(s) | 181, 248, 279, 361 |
| HpySE526I | ACGT | 5 cut(s) | 75, 92, 132, 288, 393 |
| Hsp92II | CATG | 2 cut(s) | 217, 422 |
| Kpn2I | TCCGGA | 1 cut(s) | 152 |
| Kzo9I | GATC | 1 cut(s) | 139 |
| LpnPI | CCDG | 4 cut(s) | 166, 287, 291, 452 |
| LweI | GCATC | 2 cut(s) | 260, 334 |
| MaeII | ACGT | 5 cut(s) | 75, 92, 132, 288, 393 |
| MaeIII | GTNAC | 2 cut(s) | 221, 397 |
| MalI | GATC | 1 cut(s) | 141 |
| MboI | GATC | 1 cut(s) | 139 |
| MboII | GAAGA | 3 cut(s) | 9, 272, 349 |
| MluCI | AATT | 5 cut(s) | 7, 22, 58, 242, 446 |
| MnlI | CCTC | 2 cut(s) | 260, 371 |
| MroI | TCCGGA | 1 cut(s) | 152 |
| MroXI | GAANNNNTTC | 1 cut(s) | 356 |
| MseI | TTAA | 3 cut(s) | 57, 114, 449 |
| MspI | CCGG | 1 cut(s) | 153 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 435 |
| NdeII | GATC | 1 cut(s) | 139 |
| NlaIII | CATG | 2 cut(s) | 217, 422 |
| PdmI | GAANNNNTTC | 1 cut(s) | 356 |
| PfeI | GAWTC | 1 cut(s) | 415 |
| PkrI | GCNGC | 1 cut(s) | 235 |
| Ple19I | CGATCG | 1 cut(s) | 142 |
| PvuI | CGATCG | 1 cut(s) | 142 |
| RsaI | GTAC | 1 cut(s) | 164 |
| RsaNI | GTAC | 1 cut(s) | 163 |
| SaqAI | TTAA | 3 cut(s) | 57, 114, 449 |
| SatI | GCNGC | 1 cut(s) | 234 |
| Sau3AI | GATC | 1 cut(s) | 139 |
| SetI | ASST | 8 cut(s) | 78, 95, 135, 187, 291, 382, 396, 459 |
| SfaNI | GCATC | 2 cut(s) | 260, 334 |
| SfcI | CTRYAG | 1 cut(s) | 298 |
| Sse9I | AATT | 5 cut(s) | 7, 22, 58, 242, 446 |
| SsiI | CCGC | 1 cut(s) | 233 |
| TaaI | ACNGT | 1 cut(s) | 317 |
| TaiI | ACGT | 5 cut(s) | 78, 95, 135, 291, 396 |
| TasI | AATT | 5 cut(s) | 7, 22, 58, 242, 446 |
| TauI | GCSGC | 1 cut(s) | 236 |
| TfiI | GAWTC | 1 cut(s) | 415 |
| Tru1I | TTAA | 3 cut(s) | 57, 114, 449 |
| Tru9I | TTAA | 3 cut(s) | 57, 114, 449 |
| TscAI | CASTG | 2 cut(s) | 235, 446 |
| TspDTI | ATGAA | 2 cut(s) | 365, 407 |
| TspGWI | ACGGA | 2 cut(s) | 70, 87 |
| TspRI | CASTG | 2 cut(s) | 235, 446 |
| XmnI | GAANNNNTTC | 1 cut(s) | 356 |