Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 35 | 9e-14 | PPR repeat |
| PPR_2 | PF13041 | 8 - 55 | 9e-15 | PPR repeat family |
| PPR | PF01535 | 11 - 40 | 1.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 56 - 97 | 3e-10 | PPR repeat family |
| PPR_3 | PF13812 | 77 - 131 | 3.7e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 80 - 113 | 6.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 88 - 130 | 2.2e-09 | PPR repeat family |
| PPR | PF01535 | 88 - 117 | 6e-06 | PPR repeat |
| PPR_2 | PF13041 | 119 - 165 | 2.9e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 68, 259 |
| AclWI | GGATC | 1 cut(s) | 509 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AcsI | RAATTY | 3 cut(s) | 75, 198, 319 |
| AcuI | CTGAAG | 2 cut(s) | 230, 528 |
| AgsI | TTSAA | 4 cut(s) | 80, 137, 311, 434 |
| AjnI | CCWGG | 1 cut(s) | 517 |
| AluBI | AGCT | 3 cut(s) | 124, 250, 542 |
| AluI | AGCT | 3 cut(s) | 124, 250, 542 |
| Alw26I | GTCTC | 3 cut(s) | 98, 401, 418 |
| AlwI | GGATC | 1 cut(s) | 509 |
| AoxI | GGCC | 2 cut(s) | 118, 160 |
| ApoI | RAATTY | 3 cut(s) | 75, 198, 319 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| AsuII | TTCGAA | 1 cut(s) | 500 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| BccI | CCATC | 3 cut(s) | 47, 185, 353 |
| BciT130I | CCWGG | 1 cut(s) | 519 |
| BcoDI | GTCTC | 3 cut(s) | 98, 401, 418 |
| BfmI | CTRYAG | 1 cut(s) | 459 |
| Bme1390I | CCNGG | 1 cut(s) | 519 |
| BmrFI | CCNGG | 1 cut(s) | 519 |
| BmsI | GCATC | 2 cut(s) | 454, 476 |
| BpmI | CTGGAG | 1 cut(s) | 339 |
| Bpu14I | TTCGAA | 1 cut(s) | 500 |
| BpuEI | CTTGAG | 1 cut(s) | 464 |
| BsaJI | CCNNGG | 2 cut(s) | 295, 385 |
| Bse3DI | GCAATG | 1 cut(s) | 530 |
| BseBI | CCWGG | 1 cut(s) | 519 |
| BseDI | CCNNGG | 2 cut(s) | 295, 385 |
| BseMI | GCAATG | 1 cut(s) | 530 |
| BshFI | GGCC | 2 cut(s) | 120, 162 |
| BsmAI | GTCTC | 3 cut(s) | 98, 401, 418 |
| BsmBI | CGTCTC | 1 cut(s) | 98 |
| BsnI | GGCC | 2 cut(s) | 120, 162 |
| Bsp119I | TTCGAA | 1 cut(s) | 500 |
| Bsp143I | GATC | 1 cut(s) | 514 |
| Bsp19I | CCATGG | 1 cut(s) | 295 |
| BspACI | CCGC | 2 cut(s) | 68, 259 |
| BspANI | GGCC | 2 cut(s) | 120, 162 |
| BspPI | GGATC | 1 cut(s) | 509 |
| BspT104I | TTCGAA | 1 cut(s) | 500 |
| BsrDI | GCAATG | 1 cut(s) | 530 |
| BssECI | CCNNGG | 2 cut(s) | 295, 385 |
| BssMI | GATC | 1 cut(s) | 514 |
| BssT1I | CCWWGG | 1 cut(s) | 295 |
| Bst2UI | CCWGG | 1 cut(s) | 519 |
| Bst4CI | ACNGT | 1 cut(s) | 511 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstBI | TTCGAA | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 1 cut(s) | 122 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstKTI | GATC | 1 cut(s) | 517 |
| BstMAI | GTCTC | 3 cut(s) | 98, 401, 418 |
| BstMBI | GATC | 1 cut(s) | 514 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 256 |
| BstNI | CCWGG | 1 cut(s) | 519 |
| BstSCI | CCNGG | 1 cut(s) | 517 |
| BstSFI | CTRYAG | 1 cut(s) | 459 |
| BstX2I | RGATCY | 1 cut(s) | 514 |
| BstYI | RGATCY | 1 cut(s) | 514 |
| BsuRI | GGCC | 2 cut(s) | 120, 162 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| Cac8I | GCNNGC | 1 cut(s) | 122 |
| CseI | GACGC | 1 cut(s) | 115 |
| CviAII | CATG | 2 cut(s) | 281, 296 |
| CviJI | RGCY | 8 cut(s) | 120, 124, 162, 250, 300, 348, 419, 542 |
| CviKI_1 | RGCY | 8 cut(s) | 120, 124, 162, 250, 300, 348, 419, 542 |
| DpnI | GATC | 1 cut(s) | 516 |
| DpnII | GATC | 1 cut(s) | 514 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| Eco130I | CCWWGG | 1 cut(s) | 295 |
| Eco32I | GATATC | 1 cut(s) | 28 |
| Eco57I | CTGAAG | 2 cut(s) | 230, 528 |
| EcoRI | GAATTC | 1 cut(s) | 75 |
| EcoRII | CCWGG | 1 cut(s) | 517 |
| EcoRV | GATATC | 1 cut(s) | 28 |
| EcoT14I | CCWWGG | 1 cut(s) | 295 |
| EcoT22I | ATGCAT | 1 cut(s) | 469 |
| ErhI | CCWWGG | 1 cut(s) | 295 |
| Esp3I | CGTCTC | 1 cut(s) | 98 |
| FaeI | CATG | 2 cut(s) | 284, 299 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 426, 458 |
| FatI | CATG | 2 cut(s) | 280, 295 |
| FauI | CCCGC | 1 cut(s) | 61 |
| FauNDI | CATATG | 1 cut(s) | 9 |
| GsuI | CTGGAG | 1 cut(s) | 339 |
| HaeIII | GGCC | 2 cut(s) | 120, 162 |
| HgaI | GACGC | 1 cut(s) | 115 |
| Hin1II | CATG | 2 cut(s) | 284, 299 |
| HindIII | AAGCTT | 1 cut(s) | 540 |
| HinfI | GANTC | 2 cut(s) | 277, 311 |
| Hpy188I | TCNGA | 4 cut(s) | 103, 316, 386, 551 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 80, 356, 434 |
| HpyAV | CCTTC | 1 cut(s) | 170 |
| HpyCH4III | ACNGT | 1 cut(s) | 511 |
| HpyCH4IV | ACGT | 1 cut(s) | 255 |
| HpyCH4V | TGCA | 5 cut(s) | 63, 186, 209, 366, 467 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 256 |
| HpySE526I | ACGT | 1 cut(s) | 255 |
| Hsp92II | CATG | 2 cut(s) | 284, 299 |
| Kzo9I | GATC | 1 cut(s) | 514 |
| LpnPI | CCDG | 4 cut(s) | 134, 369, 504, 531 |
| LweI | GCATC | 2 cut(s) | 454, 476 |
| MaeII | ACGT | 1 cut(s) | 255 |
| MaeIII | GTNAC | 1 cut(s) | 290 |
| MalI | GATC | 1 cut(s) | 516 |
| MboI | GATC | 1 cut(s) | 514 |
| MboII | GAAGA | 2 cut(s) | 211, 514 |
| MflI | RGATCY | 1 cut(s) | 514 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 5 cut(s) | 75, 198, 306, 319, 479 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MnlI | CCTC | 3 cut(s) | 52, 380, 441 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| Mph1103I | ATGCAT | 1 cut(s) | 469 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 3 cut(s) | 156, 252, 537 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspR9I | CCNGG | 1 cut(s) | 519 |
| MvaI | CCWGG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 256 |
| NcoI | CCATGG | 1 cut(s) | 295 |
| NdeI | CATATG | 1 cut(s) | 9 |
| NdeII | GATC | 1 cut(s) | 514 |
| NlaIII | CATG | 2 cut(s) | 284, 299 |
| NsiI | ATGCAT | 1 cut(s) | 469 |
| NspV | TTCGAA | 1 cut(s) | 500 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PfeI | GAWTC | 2 cut(s) | 277, 311 |
| Psp6I | CCWGG | 1 cut(s) | 517 |
| PspGI | CCWGG | 1 cut(s) | 517 |
| PsuI | RGATCY | 1 cut(s) | 514 |
| SaqAI | TTAA | 3 cut(s) | 156, 252, 537 |
| Sau3AI | GATC | 1 cut(s) | 514 |
| ScrFI | CCNGG | 1 cut(s) | 519 |
| SfaNI | GCATC | 2 cut(s) | 454, 476 |
| SfcI | CTRYAG | 1 cut(s) | 459 |
| SfuI | TTCGAA | 1 cut(s) | 500 |
| SmlI | CTYRAG | 1 cut(s) | 443 |
| SmoI | CTYRAG | 1 cut(s) | 443 |
| Sse9I | AATT | 5 cut(s) | 75, 198, 306, 319, 479 |
| SsiI | CCGC | 2 cut(s) | 68, 259 |
| StyD4I | CCNGG | 1 cut(s) | 517 |
| StyI | CCWWGG | 1 cut(s) | 295 |
| TaaI | ACNGT | 1 cut(s) | 511 |
| TaiI | ACGT | 1 cut(s) | 258 |
| TaqI | TCGA | 1 cut(s) | 500 |
| TasI | AATT | 5 cut(s) | 75, 198, 306, 319, 479 |
| TfiI | GAWTC | 2 cut(s) | 277, 311 |
| Tru1I | TTAA | 3 cut(s) | 156, 252, 537 |
| Tru9I | TTAA | 3 cut(s) | 156, 252, 537 |
| TspDTI | ATGAA | 2 cut(s) | 191, 269 |
| XapI | RAATTY | 3 cut(s) | 75, 198, 319 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| Zsp2I | ATGCAT | 1 cut(s) | 469 |