Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 86 - 135 | 2.6e-10 | PPR repeat family |
| PPR_1 | PF12854 | 193 - 222 | 6.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 194 - 243 | 7.4e-15 | PPR repeat family |
| PPR_3 | PF13812 | 194 - 239 | 4.8e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 225 - 258 | 8.5e-13 | PPR repeat |
| PPR_2 | PF13041 | 229 - 273 | 1.4e-15 | PPR repeat family |
| PPR | PF01535 | 232 - 262 | 9e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 695 |
| Acc65I | GGTACC | 1 cut(s) | 599 |
| AccB1I | GGYRCC | 1 cut(s) | 599 |
| AccII | CGCG | 1 cut(s) | 623 |
| AciI | CCGC | 2 cut(s) | 7, 587 |
| AcsI | RAATTY | 3 cut(s) | 354, 443, 452 |
| AcyI | GRCGYC | 1 cut(s) | 247 |
| AfaI | GTAC | 1 cut(s) | 601 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 610 |
| AflII | CTTAAG | 1 cut(s) | 656 |
| AgsI | TTSAA | 8 cut(s) | 40, 115, 274, 304, 331, 451, 464, 544 |
| AluBI | AGCT | 5 cut(s) | 20, 95, 187, 426, 757 |
| AluI | AGCT | 5 cut(s) | 20, 95, 187, 426, 757 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 23 |
| AoxI | GGCC | 1 cut(s) | 613 |
| ApeKI | GCWGC | 9 cut(s) | 20, 23, 26, 54, 57, 60, 530, 533, 641 |
| ApoI | RAATTY | 3 cut(s) | 354, 443, 452 |
| AseI | ATTAAT | 1 cut(s) | 390 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 237, 758 |
| Asp718I | GGTACC | 1 cut(s) | 599 |
| AspLEI | GCGC | 1 cut(s) | 623 |
| AspS9I | GGNCC | 1 cut(s) | 613 |
| AsuHPI | GGTGA | 1 cut(s) | 475 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 591, 624, 723, 756 |
| BanI | GGYRCC | 1 cut(s) | 599 |
| BbvCI | CCTCAGC | 1 cut(s) | 525 |
| BbvI | GCAGC | 9 cut(s) | 7, 10, 13, 66, 69, 72, 542, 545, 653 |
| BccI | CCATC | 3 cut(s) | 509, 547, 658 |
| BceAI | ACGGC | 1 cut(s) | 514 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 694, 728 |
| BciVI | GTATCC | 1 cut(s) | 724 |
| BfaI | CTAG | 2 cut(s) | 165, 605 |
| BfmI | CTRYAG | 2 cut(s) | 639, 700 |
| BfrI | CTTAAG | 1 cut(s) | 656 |
| BfuI | GTATCC | 1 cut(s) | 724 |
| BisI | GCNGC | 9 cut(s) | 21, 24, 27, 55, 58, 61, 531, 534, 642 |
| BlsI | GCNGC | 9 cut(s) | 22, 25, 28, 56, 59, 62, 532, 535, 643 |
| BmgT120I | GGNCC | 1 cut(s) | 613 |
| BmiI | GGNNCC | 1 cut(s) | 601 |
| BmsI | GCATC | 2 cut(s) | 202, 736 |
| Bpu10I | CCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 2 cut(s) | 530, 720 |
| BsaHI | GRCGYC | 1 cut(s) | 247 |
| BsaWI | WCCGGW | 1 cut(s) | 466 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 610 |
| Bse1I | ACTGG | 1 cut(s) | 649 |
| BseGI | GGATG | 4 cut(s) | 217, 475, 520, 673 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 610 |
| BseMII | CTCAG | 2 cut(s) | 516, 777 |
| BseNI | ACTGG | 1 cut(s) | 649 |
| BseXI | GCAGC | 9 cut(s) | 7, 10, 13, 66, 69, 72, 542, 545, 653 |
| Bsh1236I | CGCG | 1 cut(s) | 623 |
| Bsh1285I | CGRYCG | 1 cut(s) | 159 |
| BshFI | GGCC | 1 cut(s) | 615 |
| BshNI | GGYRCC | 1 cut(s) | 599 |
| BsiEI | CGRYCG | 1 cut(s) | 159 |
| BsiSI | CCGG | 1 cut(s) | 467 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 610 |
| BsmI | GAATGC | 1 cut(s) | 589 |
| BsnI | GGCC | 1 cut(s) | 615 |
| Bsp143I | GATC | 1 cut(s) | 708 |
| BspACI | CCGC | 2 cut(s) | 7, 587 |
| BspANI | GGCC | 1 cut(s) | 615 |
| BspCNI | CTCAG | 2 cut(s) | 517, 776 |
| BspFNI | CGCG | 1 cut(s) | 623 |
| BspLI | GGNNCC | 1 cut(s) | 601 |
| BspMAI | CTGCAG | 1 cut(s) | 643 |
| BspQI | GCTCTTC | 1 cut(s) | 764 |
| BspT107I | GGYRCC | 1 cut(s) | 599 |
| BspTI | CTTAAG | 1 cut(s) | 656 |
| BsrI | ACTGG | 1 cut(s) | 649 |
| BssMI | GATC | 1 cut(s) | 708 |
| BssNI | GRCGYC | 1 cut(s) | 247 |
| Bst4CI | ACNGT | 2 cut(s) | 319, 719 |
| Bst6I | CTCTTC | 1 cut(s) | 764 |
| BstACI | GRCGYC | 1 cut(s) | 247 |
| BstAFI | CTTAAG | 1 cut(s) | 656 |
| BstC8I | GCNNGC | 3 cut(s) | 9, 572, 683 |
| BstDEI | CTNAG | 2 cut(s) | 525, 763 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 608 |
| BstF5I | GGATG | 4 cut(s) | 217, 475, 520, 673 |
| BstFNI | CGCG | 1 cut(s) | 623 |
| BstHHI | GCGC | 1 cut(s) | 623 |
| BstKTI | GATC | 1 cut(s) | 711 |
| BstMBI | GATC | 1 cut(s) | 708 |
| BstMCI | CGRYCG | 1 cut(s) | 159 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 17, 26, 60, 244, 253, 530 |
| BstSFI | CTRYAG | 2 cut(s) | 639, 700 |
| BstUI | CGCG | 1 cut(s) | 623 |
| BstV1I | GCAGC | 9 cut(s) | 7, 10, 13, 66, 69, 72, 542, 545, 653 |
| BsuI | GTATCC | 1 cut(s) | 724 |
| BsuRI | GGCC | 1 cut(s) | 615 |
| BtsCI | GGATG | 4 cut(s) | 217, 475, 520, 673 |
| BtsI | GCAGTG | 1 cut(s) | 636 |
| BtsIMutI | CAGTG | 1 cut(s) | 636 |
| Cac8I | GCNNGC | 3 cut(s) | 9, 572, 683 |
| CaiI | CAGNNNCTG | 1 cut(s) | 23 |
| CfoI | GCGC | 1 cut(s) | 623 |
| Cfr13I | GGNCC | 1 cut(s) | 613 |
| CseI | GACGC | 2 cut(s) | 236, 336 |
| Csp6I | GTAC | 1 cut(s) | 600 |
| CviAII | CATG | 2 cut(s) | 750, 820 |
| CviQI | GTAC | 1 cut(s) | 600 |
| DdeI | CTNAG | 2 cut(s) | 525, 763 |
| DpnI | GATC | 1 cut(s) | 710 |
| DpnII | GATC | 1 cut(s) | 708 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 695 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 695 |
| Eam1104I | CTCTTC | 1 cut(s) | 764 |
| EarI | CTCTTC | 1 cut(s) | 764 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 608 |
| EcoO109I | RGGNCCY | 1 cut(s) | 613 |
| EcoRI | GAATTC | 1 cut(s) | 354 |
| EcoT22I | ATGCAT | 1 cut(s) | 751 |
| FaeI | CATG | 2 cut(s) | 753, 823 |
| FaiI | YATR | 9 cut(s) | 51, 74, 372, 405, 407, 702, 751, 807, 821 |
| FatI | CATG | 2 cut(s) | 749, 819 |
| FauNDI | CATATG | 1 cut(s) | 405 |
| Fnu4HI | GCNGC | 9 cut(s) | 21, 24, 27, 55, 58, 61, 531, 534, 642 |
| FokI | GGATG | 4 cut(s) | 224, 482, 527, 680 |
| Fsp4HI | GCNGC | 9 cut(s) | 21, 24, 27, 55, 58, 61, 531, 534, 642 |
| FspBI | CTAG | 2 cut(s) | 165, 605 |
| GlaI | GCGC | 1 cut(s) | 622 |
| GluI | GCNGC | 9 cut(s) | 21, 24, 27, 55, 58, 61, 531, 534, 642 |
| HaeIII | GGCC | 1 cut(s) | 615 |
| HapII | CCGG | 1 cut(s) | 467 |
| HgaI | GACGC | 2 cut(s) | 236, 336 |
| HhaI | GCGC | 1 cut(s) | 623 |
| Hin1I | GRCGYC | 1 cut(s) | 247 |
| Hin1II | CATG | 2 cut(s) | 753, 823 |
| Hin6I | GCGC | 1 cut(s) | 621 |
| HinP1I | GCGC | 1 cut(s) | 621 |
| HincII | GTYRAC | 1 cut(s) | 290 |
| HindII | GTYRAC | 1 cut(s) | 290 |
| HinfI | GANTC | 2 cut(s) | 161, 577 |
| HpaII | CCGG | 1 cut(s) | 467 |
| HphI | GGTGA | 1 cut(s) | 475 |
| Hpy166II | GTNNAC | 1 cut(s) | 290 |
| Hpy188I | TCNGA | 2 cut(s) | 582, 766 |
| Hpy188III | TCNNGA | 5 cut(s) | 141, 165, 351, 362, 509 |
| Hpy8I | GTNNAC | 1 cut(s) | 290 |
| Hpy99I | CGWCG | 1 cut(s) | 233 |
| HpyAV | CCTTC | 4 cut(s) | 34, 156, 267, 490 |
| HpyCH4III | ACNGT | 2 cut(s) | 319, 719 |
| HpyCH4IV | ACGT | 1 cut(s) | 690 |
| HpyCH4V | TGCA | 7 cut(s) | 409, 570, 641, 681, 726, 749, 830 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 17, 26, 60, 244, 253, 530 |
| HpyF3I | CTNAG | 2 cut(s) | 525, 763 |
| HpySE526I | ACGT | 1 cut(s) | 690 |
| Hsp92I | GRCGYC | 1 cut(s) | 247 |
| Hsp92II | CATG | 2 cut(s) | 753, 823 |
| HspAI | GCGC | 1 cut(s) | 621 |
| KpnI | GGTACC | 1 cut(s) | 603 |
| Kzo9I | GATC | 1 cut(s) | 708 |
| LguI | GCTCTTC | 1 cut(s) | 764 |
| LpnPI | CCDG | 8 cut(s) | 79, 197, 229, 336, 375, 480, 662, 699 |
| Lsp1109I | GCAGC | 9 cut(s) | 7, 10, 13, 66, 69, 72, 542, 545, 653 |
| LweI | GCATC | 2 cut(s) | 202, 736 |
| MaeI | CTAG | 2 cut(s) | 165, 605 |
| MaeII | ACGT | 1 cut(s) | 690 |
| MaeIII | GTNAC | 3 cut(s) | 472, 589, 629 |
| MalI | GATC | 1 cut(s) | 710 |
| MboI | GATC | 1 cut(s) | 708 |
| MboII | GAAGA | 7 cut(s) | 77, 80, 90, 439, 497, 673, 751 |
| MluCI | AATT | 6 cut(s) | 354, 391, 443, 452, 565, 832 |
| Mph1103I | ATGCAT | 1 cut(s) | 751 |
| MroXI | GAANNNNTTC | 2 cut(s) | 237, 758 |
| MseI | TTAA | 3 cut(s) | 377, 390, 657 |
| MspA1I | CMGCKG | 1 cut(s) | 20 |
| MspCI | CTTAAG | 1 cut(s) | 656 |
| MspI | CCGG | 1 cut(s) | 467 |
| Mva1269I | GAATGC | 1 cut(s) | 589 |
| MvnI | CGCG | 1 cut(s) | 623 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 17, 26, 60, 244, 253, 530 |
| NdeI | CATATG | 1 cut(s) | 405 |
| NdeII | GATC | 1 cut(s) | 708 |
| NlaIII | CATG | 2 cut(s) | 753, 823 |
| NlaIV | GGNNCC | 1 cut(s) | 601 |
| NmuCI | GTSAC | 1 cut(s) | 472 |
| NsiI | ATGCAT | 1 cut(s) | 751 |
| PciSI | GCTCTTC | 1 cut(s) | 764 |
| PctI | GAATGC | 1 cut(s) | 589 |
| PdmI | GAANNNNTTC | 2 cut(s) | 237, 758 |
| PfeI | GAWTC | 2 cut(s) | 161, 577 |
| PkrI | GCNGC | 9 cut(s) | 22, 25, 28, 56, 59, 62, 532, 535, 643 |
| PshBI | ATTAAT | 1 cut(s) | 390 |
| PspN4I | GGNNCC | 1 cut(s) | 601 |
| PspPI | GGNCC | 1 cut(s) | 613 |
| PstI | CTGCAG | 1 cut(s) | 643 |
| PstNI | CAGNNNCTG | 1 cut(s) | 23 |
| PvuII | CAGCTG | 1 cut(s) | 20 |
| RsaI | GTAC | 1 cut(s) | 601 |
| RsaNI | GTAC | 1 cut(s) | 600 |
| SapI | GCTCTTC | 1 cut(s) | 764 |
| SaqAI | TTAA | 3 cut(s) | 377, 390, 657 |
| SatI | GCNGC | 9 cut(s) | 21, 24, 27, 55, 58, 61, 531, 534, 642 |
| Sau3AI | GATC | 1 cut(s) | 708 |
| Sau96I | GGNCC | 1 cut(s) | 613 |
| SfaNI | GCATC | 2 cut(s) | 202, 736 |
| SfcI | CTRYAG | 2 cut(s) | 639, 700 |
| SmlI | CTYRAG | 3 cut(s) | 509, 656, 735 |
| SmoI | CTYRAG | 3 cut(s) | 509, 656, 735 |
| Sse9I | AATT | 6 cut(s) | 354, 391, 443, 452, 565, 832 |
| SsiI | CCGC | 2 cut(s) | 7, 587 |
| SspMI | CTAG | 2 cut(s) | 165, 605 |
| TaaI | ACNGT | 2 cut(s) | 319, 719 |
| TaiI | ACGT | 1 cut(s) | 693 |
| TaqI | TCGA | 6 cut(s) | 91, 142, 155, 228, 314, 714 |
| TaqII | GACCGA | 1 cut(s) | 173 |
| TasI | AATT | 6 cut(s) | 354, 391, 443, 452, 565, 832 |
| TfiI | GAWTC | 2 cut(s) | 161, 577 |
| Tru1I | TTAA | 3 cut(s) | 377, 390, 657 |
| Tru9I | TTAA | 3 cut(s) | 377, 390, 657 |
| TscAI | CASTG | 1 cut(s) | 643 |
| TseFI | GTSAC | 1 cut(s) | 472 |
| TseI | GCWGC | 9 cut(s) | 20, 23, 26, 54, 57, 60, 530, 533, 641 |
| Tsp45I | GTSAC | 1 cut(s) | 472 |
| TspDTI | ATGAA | 2 cut(s) | 684, 808 |
| TspGWI | ACGGA | 1 cut(s) | 250 |
| TspRI | CASTG | 1 cut(s) | 643 |
| Vha464I | CTTAAG | 1 cut(s) | 656 |
| VspI | ATTAAT | 1 cut(s) | 390 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 608 |
| XapI | RAATTY | 3 cut(s) | 354, 443, 452 |
| XbaI | TCTAGA | 1 cut(s) | 164 |
| XmnI | GAANNNNTTC | 2 cut(s) | 237, 758 |
| XspI | CTAG | 2 cut(s) | 165, 605 |
| Zsp2I | ATGCAT | 1 cut(s) | 751 |