Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 9 - 55 | 2.8e-07 | PPR repeat family |
| PPR_1 | PF12854 | 69 - 100 | 2e-09 | PPR repeat |
| PPR_2 | PF13041 | 71 - 119 | 2.9e-14 | PPR repeat family |
| PPR_3 | PF13812 | 71 - 120 | 3e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 102 - 133 | 4.6e-08 | PPR repeat |
| PPR_2 | PF13041 | 106 - 155 | 1.4e-14 | PPR repeat family |
| PPR_3 | PF13812 | 130 - 188 | 1.6e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 137 - 170 | 4.5e-11 | PPR repeat |
| PPR_2 | PF13041 | 141 - 190 | 8.4e-16 | PPR repeat family |
| PPR | PF01535 | 144 - 170 | 4.4e-07 | PPR repeat |
| PPR_3 | PF13812 | 165 - 221 | 2.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 174 - 204 | 6.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 176 - 224 | 2.9e-13 | PPR repeat family |
| PPR | PF01535 | 180 - 209 | 9.8e-07 | PPR repeat |
| PPR_1 | PF12854 | 207 - 240 | 2e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 208 |
| AciI | CCGC | 1 cut(s) | 272 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AfaI | GTAC | 1 cut(s) | 487 |
| AgsI | TTSAA | 9 cut(s) | 70, 112, 145, 229, 499, 544, 605, 617, 629 |
| AhlI | ACTAGT | 1 cut(s) | 367 |
| AluBI | AGCT | 1 cut(s) | 283 |
| AluI | AGCT | 1 cut(s) | 283 |
| AoxI | GGCC | 1 cut(s) | 273 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 389 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 354, 387 |
| BccI | CCATC | 4 cut(s) | 289, 347, 571, 656 |
| BceAI | ACGGC | 1 cut(s) | 175 |
| BciVI | GTATCC | 1 cut(s) | 355 |
| BclI | TGATCA | 1 cut(s) | 447 |
| BcuI | ACTAGT | 1 cut(s) | 367 |
| BfaI | CTAG | 1 cut(s) | 368 |
| BfmI | CTRYAG | 1 cut(s) | 331 |
| BfuI | GTATCC | 1 cut(s) | 355 |
| BisI | GCNGC | 1 cut(s) | 273 |
| BlsI | GCNGC | 1 cut(s) | 274 |
| BmrI | ACTGGG | 1 cut(s) | 207 |
| BmsI | GCATC | 4 cut(s) | 299, 367, 547, 577 |
| BmuI | ACTGGG | 1 cut(s) | 207 |
| BpmI | CTGGAG | 1 cut(s) | 405 |
| Bsa29I | ATCGAT | 1 cut(s) | 585 |
| BsaBI | GATNNNNATC | 2 cut(s) | 14, 581 |
| Bse1I | ACTGG | 3 cut(s) | 213, 240, 727 |
| Bse3DI | GCAATG | 1 cut(s) | 387 |
| Bse8I | GATNNNNATC | 2 cut(s) | 14, 581 |
| BseCI | ATCGAT | 1 cut(s) | 585 |
| BseGI | GGATG | 3 cut(s) | 314, 582, 667 |
| BseJI | GATNNNNATC | 2 cut(s) | 14, 581 |
| BseMI | GCAATG | 1 cut(s) | 387 |
| BseMII | CTCAG | 1 cut(s) | 408 |
| BseNI | ACTGG | 3 cut(s) | 213, 240, 727 |
| BseRI | GAGGAG | 1 cut(s) | 693 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BshVI | ATCGAT | 1 cut(s) | 585 |
| BsnI | GGCC | 1 cut(s) | 275 |
| Bsp143I | GATC | 3 cut(s) | 9, 447, 709 |
| BspACI | CCGC | 1 cut(s) | 272 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BspCNI | CTCAG | 1 cut(s) | 407 |
| BspDI | ATCGAT | 1 cut(s) | 585 |
| BsrDI | GCAATG | 1 cut(s) | 387 |
| BsrI | ACTGG | 3 cut(s) | 213, 240, 727 |
| BssMI | GATC | 3 cut(s) | 9, 447, 709 |
| BssNAI | GTATAC | 1 cut(s) | 209 |
| Bst1107I | GTATAC | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 350 |
| Bst6I | CTCTTC | 2 cut(s) | 395, 403 |
| BstC8I | GCNNGC | 2 cut(s) | 314, 674 |
| BstDEI | CTNAG | 2 cut(s) | 287, 394 |
| BstF5I | GGATG | 3 cut(s) | 314, 582, 667 |
| BstKTI | GATC | 3 cut(s) | 12, 450, 712 |
| BstMBI | GATC | 3 cut(s) | 9, 447, 709 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 468 |
| BstSFI | CTRYAG | 1 cut(s) | 331 |
| BstZ17I | GTATAC | 1 cut(s) | 209 |
| Bsu15I | ATCGAT | 1 cut(s) | 585 |
| BsuI | GTATCC | 1 cut(s) | 355 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BsuTUI | ATCGAT | 1 cut(s) | 585 |
| BtsCI | GGATG | 3 cut(s) | 314, 582, 667 |
| BtsI | GCAGTG | 1 cut(s) | 267 |
| BtsIMutI | CAGTG | 3 cut(s) | 220, 233, 267 |
| Cac8I | GCNNGC | 2 cut(s) | 314, 674 |
| ClaI | ATCGAT | 1 cut(s) | 585 |
| Csp6I | GTAC | 1 cut(s) | 486 |
| CviJI | RGCY | 7 cut(s) | 140, 162, 246, 275, 283, 316, 666 |
| CviKI_1 | RGCY | 7 cut(s) | 140, 162, 246, 275, 283, 316, 666 |
| CviQI | GTAC | 1 cut(s) | 486 |
| DdeI | CTNAG | 2 cut(s) | 287, 394 |
| DpnI | GATC | 3 cut(s) | 11, 449, 711 |
| DpnII | GATC | 3 cut(s) | 9, 447, 709 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 2 cut(s) | 395, 403 |
| EarI | CTCTTC | 2 cut(s) | 395, 403 |
| FaiI | YATR | 6 cut(s) | 33, 209, 254, 323, 333, 646 |
| FbaI | TGATCA | 1 cut(s) | 447 |
| FblI | GTMKAC | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 1 cut(s) | 273 |
| FokI | GGATG | 3 cut(s) | 321, 589, 674 |
| Fsp4HI | GCNGC | 1 cut(s) | 273 |
| FspBI | CTAG | 1 cut(s) | 368 |
| GluI | GCNGC | 1 cut(s) | 273 |
| GsuI | CTGGAG | 1 cut(s) | 405 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| HinfI | GANTC | 3 cut(s) | 15, 456, 613 |
| Hpy166II | GTNNAC | 1 cut(s) | 209 |
| Hpy188I | TCNGA | 4 cut(s) | 9, 14, 397, 516 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 170, 422, 527 |
| Hpy8I | GTNNAC | 1 cut(s) | 209 |
| HpyAV | CCTTC | 3 cut(s) | 293, 476, 550 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 350 |
| HpyCH4IV | ACGT | 1 cut(s) | 546 |
| HpyCH4V | TGCA | 6 cut(s) | 252, 380, 462, 535, 560, 590 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 468 |
| HpyF3I | CTNAG | 2 cut(s) | 287, 394 |
| HpySE526I | ACGT | 1 cut(s) | 546 |
| Ksp22I | TGATCA | 1 cut(s) | 447 |
| Kzo9I | GATC | 3 cut(s) | 9, 447, 709 |
| LmnI | GCTCC | 1 cut(s) | 424 |
| LpnPI | CCDG | 6 cut(s) | 221, 226, 435, 453, 540, 708 |
| LweI | GCATC | 4 cut(s) | 299, 367, 547, 577 |
| MaeI | CTAG | 1 cut(s) | 368 |
| MaeII | ACGT | 1 cut(s) | 546 |
| MaeIII | GTNAC | 4 cut(s) | 20, 220, 430, 718 |
| MalI | GATC | 3 cut(s) | 11, 449, 711 |
| MboI | GATC | 3 cut(s) | 9, 447, 709 |
| MboII | GAAGA | 4 cut(s) | 100, 304, 382, 420 |
| MfeI | CAATTG | 1 cut(s) | 52 |
| MluCI | AATT | 5 cut(s) | 52, 113, 399, 624, 649 |
| MlyI | GAGTC | 1 cut(s) | 465 |
| MnlI | CCTC | 7 cut(s) | 187, 191, 398, 404, 565, 614, 671 |
| MroXI | GAANNNNTTC | 1 cut(s) | 389 |
| MseI | TTAA | 1 cut(s) | 123 |
| MunI | CAATTG | 1 cut(s) | 52 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 468 |
| NdeII | GATC | 3 cut(s) | 9, 447, 709 |
| NmuCI | GTSAC | 1 cut(s) | 20 |
| PdmI | GAANNNNTTC | 1 cut(s) | 389 |
| PfeI | GAWTC | 2 cut(s) | 15, 613 |
| PkrI | GCNGC | 1 cut(s) | 274 |
| PleI | GAGTC | 1 cut(s) | 464 |
| PpsI | GAGTC | 1 cut(s) | 464 |
| RsaI | GTAC | 1 cut(s) | 487 |
| RsaNI | GTAC | 1 cut(s) | 486 |
| SaqAI | TTAA | 1 cut(s) | 123 |
| SatI | GCNGC | 1 cut(s) | 273 |
| Sau3AI | GATC | 3 cut(s) | 9, 447, 709 |
| SchI | GAGTC | 1 cut(s) | 465 |
| SetI | ASST | 9 cut(s) | 202, 285, 390, 415, 429, 487, 514, 542, 549 |
| SfaNI | GCATC | 4 cut(s) | 299, 367, 547, 577 |
| SfcI | CTRYAG | 1 cut(s) | 331 |
| SpeI | ACTAGT | 1 cut(s) | 367 |
| Sse9I | AATT | 5 cut(s) | 52, 113, 399, 624, 649 |
| SsiI | CCGC | 1 cut(s) | 272 |
| SspMI | CTAG | 1 cut(s) | 368 |
| TaaI | ACNGT | 2 cut(s) | 62, 350 |
| TaiI | ACGT | 1 cut(s) | 549 |
| TaqI | TCGA | 2 cut(s) | 171, 585 |
| TasI | AATT | 5 cut(s) | 52, 113, 399, 624, 649 |
| TauI | GCSGC | 1 cut(s) | 275 |
| TfiI | GAWTC | 2 cut(s) | 15, 613 |
| Tru1I | TTAA | 1 cut(s) | 123 |
| Tru9I | TTAA | 1 cut(s) | 123 |
| TscAI | CASTG | 3 cut(s) | 220, 240, 274 |
| TseFI | GTSAC | 1 cut(s) | 20 |
| Tsp45I | GTSAC | 1 cut(s) | 20 |
| TspDTI | ATGAA | 2 cut(s) | 398, 516 |
| TspGWI | ACGGA | 1 cut(s) | 8 |
| TspRI | CASTG | 3 cut(s) | 220, 240, 274 |
| XmiI | GTMKAC | 1 cut(s) | 208 |
| XmnI | GAANNNNTTC | 1 cut(s) | 389 |
| XspI | CTAG | 1 cut(s) | 368 |