Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 1 - 108 | 8e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 1 - 54 | 2.2e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 36 | 9.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 1.8e-14 | PPR repeat family |
| PPR | PF01535 | 12 - 41 | 1.9e-06 | PPR repeat |
| TPR_24 | PF23276 | 24 - 113 | 4e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 39 - 71 | 1.1e-11 | PPR repeat |
| PPR_2 | PF13041 | 46 - 92 | 8.4e-12 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 1.1e-07 | PPR repeat |
| PPR_3 | PF13812 | 67 - 127 | 4.7e-08 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 79 - 125 | 1.4e-15 | PPR repeat family |
| PPR_1 | PF12854 | 80 - 107 | 7.1e-06 | PPR repeat |
| PPR | PF01535 | 82 - 109 | 2.2e-06 | PPR repeat |
| TPR_24 | PF23276 | 85 - 189 | 1.1e-06 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 129 - 166 | 2.4e-07 | PPR repeat family |
| PPR_1 | PF12854 | 131 - 158 | 1e-05 | PPR repeat |
| PPR_long | PF17177 | 143 - 263 | 1.8e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 153 - 209 | 7.3e-13 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 162 - 189 | 2.8e-10 | PPR repeat |
| PPR_2 | PF13041 | 165 - 213 | 9.1e-19 | PPR repeat family |
| PPR | PF01535 | 167 - 197 | 3.2e-06 | PPR repeat |
| TPR_24 | PF23276 | 178 - 278 | 5.3e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 193 - 244 | 2.1e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 195 - 227 | 2.6e-15 | PPR repeat |
| PPR | PF01535 | 203 - 232 | 2.6e-10 | PPR repeat |
| PPR_2 | PF13041 | 203 - 247 | 4.1e-16 | PPR repeat family |
| PPR | PF01535 | 238 - 267 | 6.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 238 - 273 | 7.8e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 80 |
| AciI | CCGC | 2 cut(s) | 80, 659 |
| AclWI | GGATC | 3 cut(s) | 219, 232, 854 |
| AcoI | YGGCCR | 1 cut(s) | 376 |
| AfaI | GTAC | 2 cut(s) | 30, 591 |
| AgsI | TTSAA | 6 cut(s) | 113, 242, 310, 395, 521, 779 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 816, 848 |
| AluBI | AGCT | 1 cut(s) | 536 |
| AluI | AGCT | 1 cut(s) | 536 |
| Alw26I | GTCTC | 1 cut(s) | 763 |
| AlwI | GGATC | 3 cut(s) | 219, 232, 854 |
| AoxI | GGCC | 1 cut(s) | 376 |
| ApeKI | GCWGC | 1 cut(s) | 693 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AspS9I | GGNCC | 1 cut(s) | 711 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AvaII | GGWCC | 1 cut(s) | 711 |
| BalI | TGGCCA | 1 cut(s) | 378 |
| BamHI | GGATCC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 1 cut(s) | 556 |
| BbvI | GCAGC | 1 cut(s) | 680 |
| BccI | CCATC | 3 cut(s) | 67, 362, 698 |
| BceAI | ACGGC | 1 cut(s) | 859 |
| BcoDI | GTCTC | 1 cut(s) | 763 |
| BfaI | CTAG | 1 cut(s) | 491 |
| BfmI | CTRYAG | 2 cut(s) | 552, 804 |
| BisI | GCNGC | 1 cut(s) | 694 |
| BlsI | GCNGC | 1 cut(s) | 695 |
| Bme18I | GGWCC | 1 cut(s) | 711 |
| BmgT120I | GGNCC | 1 cut(s) | 711 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmsI | GCATC | 4 cut(s) | 406, 764, 799, 821 |
| BpiI | GAAGAC | 1 cut(s) | 556 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 551, 583 |
| BpmI | CTGGAG | 1 cut(s) | 684 |
| Bsa29I | ATCGAT | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 2 cut(s) | 228, 730 |
| BseCI | ATCGAT | 1 cut(s) | 288 |
| BseDI | CCNNGG | 2 cut(s) | 228, 730 |
| BseGI | GGATG | 1 cut(s) | 78 |
| BseMII | CTCAG | 1 cut(s) | 662 |
| BseRI | GAGGAG | 1 cut(s) | 189 |
| BseXI | GCAGC | 1 cut(s) | 680 |
| BseYI | CCCAGC | 1 cut(s) | 536 |
| Bsh1236I | CGCG | 1 cut(s) | 80 |
| BshFI | GGCC | 1 cut(s) | 378 |
| BshVI | ATCGAT | 1 cut(s) | 288 |
| BsiSI | CCGG | 1 cut(s) | 863 |
| BsmAI | GTCTC | 1 cut(s) | 763 |
| BsnI | GGCC | 1 cut(s) | 378 |
| Bsp143I | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| Bsp19I | CCATGG | 1 cut(s) | 228 |
| BspACI | CCGC | 2 cut(s) | 80, 659 |
| BspANI | GGCC | 1 cut(s) | 378 |
| BspCNI | CTCAG | 1 cut(s) | 663 |
| BspDI | ATCGAT | 1 cut(s) | 288 |
| BspFNI | CGCG | 1 cut(s) | 80 |
| BspHI | TCATGA | 1 cut(s) | 890 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspMAI | CTGCAG | 2 cut(s) | 556, 808 |
| BspPI | GGATC | 3 cut(s) | 219, 232, 854 |
| BssECI | CCNNGG | 2 cut(s) | 228, 730 |
| BssMI | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| BssT1I | CCWWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 5 cut(s) | 43, 146, 161, 167, 346 |
| BstDEI | CTNAG | 3 cut(s) | 461, 671, 846 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstF5I | GGATG | 1 cut(s) | 78 |
| BstFNI | CGCG | 1 cut(s) | 80 |
| BstKTI | GATC | 5 cut(s) | 208, 227, 288, 292, 862 |
| BstMAI | GTCTC | 1 cut(s) | 763 |
| BstMBI | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 761 |
| BstSFI | CTRYAG | 2 cut(s) | 552, 804 |
| BstUI | CGCG | 1 cut(s) | 80 |
| BstV1I | GCAGC | 1 cut(s) | 680 |
| BstV2I | GAAGAC | 1 cut(s) | 556 |
| BstX2I | RGATCY | 2 cut(s) | 224, 859 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 94, 708 |
| BstYI | RGATCY | 2 cut(s) | 224, 859 |
| Bsu15I | ATCGAT | 1 cut(s) | 288 |
| BsuRI | GGCC | 1 cut(s) | 378 |
| BsuTUI | ATCGAT | 1 cut(s) | 288 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtsCI | GGATG | 1 cut(s) | 78 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| CciI | TCATGA | 1 cut(s) | 890 |
| Cfr13I | GGNCC | 1 cut(s) | 711 |
| ClaI | ATCGAT | 1 cut(s) | 288 |
| CseI | GACGC | 2 cut(s) | 62, 308 |
| Csp6I | GTAC | 2 cut(s) | 29, 590 |
| CviAII | CATG | 4 cut(s) | 229, 387, 626, 891 |
| CviQI | GTAC | 2 cut(s) | 29, 590 |
| DdeI | CTNAG | 3 cut(s) | 461, 671, 846 |
| DpnI | GATC | 5 cut(s) | 207, 226, 287, 291, 861 |
| DpnII | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| EaeI | YGGCCR | 1 cut(s) | 376 |
| Eco130I | CCWWGG | 1 cut(s) | 228 |
| Eco47I | GGWCC | 1 cut(s) | 711 |
| EcoT14I | CCWWGG | 1 cut(s) | 228 |
| EcoT22I | ATGCAT | 1 cut(s) | 814 |
| ErhI | CCWWGG | 1 cut(s) | 228 |
| FaeI | CATG | 4 cut(s) | 232, 390, 629, 894 |
| FatI | CATG | 4 cut(s) | 228, 386, 625, 890 |
| Fnu4HI | GCNGC | 1 cut(s) | 694 |
| FokI | GGATG | 1 cut(s) | 85 |
| Fsp4HI | GCNGC | 1 cut(s) | 694 |
| FspBI | CTAG | 1 cut(s) | 491 |
| GluI | GCNGC | 1 cut(s) | 694 |
| GsaI | CCCAGC | 1 cut(s) | 540 |
| GsuI | CTGGAG | 1 cut(s) | 684 |
| HaeIII | GGCC | 1 cut(s) | 378 |
| HapII | CCGG | 1 cut(s) | 863 |
| HgaI | GACGC | 2 cut(s) | 62, 308 |
| Hin1II | CATG | 4 cut(s) | 232, 390, 629, 894 |
| HincII | GTYRAC | 1 cut(s) | 52 |
| HindII | GTYRAC | 1 cut(s) | 52 |
| HinfI | GANTC | 5 cut(s) | 109, 548, 622, 791, 887 |
| HpaII | CCGG | 1 cut(s) | 863 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 2 cut(s) | 52, 505 |
| Hpy188I | TCNGA | 1 cut(s) | 731 |
| Hpy188III | TCNNGA | 3 cut(s) | 701, 779, 891 |
| Hpy8I | GTNNAC | 2 cut(s) | 52, 505 |
| Hpy99I | CGWCG | 1 cut(s) | 324 |
| HpyAV | CCTTC | 3 cut(s) | 46, 62, 515 |
| HpyCH4III | ACNGT | 5 cut(s) | 43, 146, 161, 167, 346 |
| HpyCH4V | TGCA | 5 cut(s) | 273, 531, 554, 806, 812 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 761 |
| HpyF3I | CTNAG | 3 cut(s) | 461, 671, 846 |
| Hsp92II | CATG | 4 cut(s) | 232, 390, 629, 894 |
| Kzo9I | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| LpnPI | CCDG | 7 cut(s) | 141, 278, 446, 522, 555, 714, 876 |
| Lsp1109I | GCAGC | 1 cut(s) | 680 |
| LweI | GCATC | 4 cut(s) | 406, 764, 799, 821 |
| MaeI | CTAG | 1 cut(s) | 491 |
| MaeIII | GTNAC | 4 cut(s) | 136, 161, 346, 738 |
| MalI | GATC | 5 cut(s) | 207, 226, 287, 291, 861 |
| MboI | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| MboII | GAAGA | 1 cut(s) | 556 |
| MflI | RGATCY | 2 cut(s) | 224, 859 |
| MlsI | TGGCCA | 1 cut(s) | 378 |
| MluCI | AATT | 4 cut(s) | 120, 455, 482, 824 |
| MluNI | TGGCCA | 1 cut(s) | 378 |
| MlyI | GAGTC | 1 cut(s) | 800 |
| MmeI | TCCRAC | 1 cut(s) | 689 |
| MnlI | CCTC | 6 cut(s) | 110, 167, 181, 553, 597, 725 |
| Mox20I | TGGCCA | 1 cut(s) | 378 |
| Mph1103I | ATGCAT | 1 cut(s) | 814 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MscI | TGGCCA | 1 cut(s) | 378 |
| MseI | TTAA | 3 cut(s) | 261, 650, 881 |
| Msp20I | TGGCCA | 1 cut(s) | 378 |
| MspI | CCGG | 1 cut(s) | 863 |
| MvnI | CGCG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 761 |
| NcoI | CCATGG | 1 cut(s) | 228 |
| NdeII | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| NlaIII | CATG | 4 cut(s) | 232, 390, 629, 894 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NsiI | ATGCAT | 1 cut(s) | 814 |
| PagI | TCATGA | 1 cut(s) | 890 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 4 cut(s) | 109, 548, 622, 887 |
| PkrI | GCNGC | 1 cut(s) | 695 |
| PleI | GAGTC | 1 cut(s) | 799 |
| PpsI | GAGTC | 1 cut(s) | 799 |
| PspFI | CCCAGC | 1 cut(s) | 536 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PspPI | GGNCC | 1 cut(s) | 711 |
| PstI | CTGCAG | 2 cut(s) | 556, 808 |
| PsuI | RGATCY | 2 cut(s) | 224, 859 |
| RsaI | GTAC | 2 cut(s) | 30, 591 |
| RsaNI | GTAC | 2 cut(s) | 29, 590 |
| SaqAI | TTAA | 3 cut(s) | 261, 650, 881 |
| SatI | GCNGC | 1 cut(s) | 694 |
| Sau3AI | GATC | 5 cut(s) | 205, 224, 285, 289, 859 |
| Sau96I | GGNCC | 1 cut(s) | 711 |
| SchI | GAGTC | 1 cut(s) | 800 |
| SetI | ASST | 6 cut(s) | 38, 526, 538, 564, 716, 852 |
| SfaNI | GCATC | 4 cut(s) | 406, 764, 799, 821 |
| SfcI | CTRYAG | 2 cut(s) | 552, 804 |
| SinI | GGWCC | 1 cut(s) | 711 |
| Sse9I | AATT | 4 cut(s) | 120, 455, 482, 824 |
| SsiI | CCGC | 2 cut(s) | 80, 659 |
| SspMI | CTAG | 1 cut(s) | 491 |
| StyI | CCWWGG | 1 cut(s) | 228 |
| TaaI | ACNGT | 5 cut(s) | 43, 146, 161, 167, 346 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TasI | AATT | 4 cut(s) | 120, 455, 482, 824 |
| TatI | WGTACW | 1 cut(s) | 589 |
| TfiI | GAWTC | 4 cut(s) | 109, 548, 622, 887 |
| Tru1I | TTAA | 3 cut(s) | 261, 650, 881 |
| Tru9I | TTAA | 3 cut(s) | 261, 650, 881 |
| TscAI | CASTG | 1 cut(s) | 46 |
| TseI | GCWGC | 1 cut(s) | 693 |
| TspDTI | ATGAA | 3 cut(s) | 485, 614, 879 |
| TspGWI | ACGGA | 1 cut(s) | 279 |
| TspRI | CASTG | 1 cut(s) | 46 |
| VpaK11BI | GGWCC | 1 cut(s) | 711 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |
| XspI | CTAG | 1 cut(s) | 491 |
| Zsp2I | ATGCAT | 1 cut(s) | 814 |