Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 5 - 40 | 1.1e-09 | PPR repeat family |
| PPR_3 | PF13812 | 14 - 73 | 9e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 24 - 55 | 3.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 35 - 74 | 5.1e-09 | PPR repeat family |
| PPR_1 | PF12854 | 58 - 80 | 2.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 84 - 111 | 1.2e-06 | PPR repeat family |
| PPR_3 | PF13812 | 86 - 142 | 1e-05 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 93 - 126 | 5.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 98 - 145 | 3.6e-16 | PPR repeat family |
| PPR | PF01535 | 100 - 130 | 6.9e-09 | PPR repeat |
| PPR_1 | PF12854 | 128 - 145 | 6.3e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 1 cut(s) | 391 |
| AccII | CGCG | 1 cut(s) | 356 |
| AciI | CCGC | 1 cut(s) | 354 |
| AgsI | TTSAA | 5 cut(s) | 49, 155, 167, 262, 347 |
| AluBI | AGCT | 1 cut(s) | 35 |
| AluI | AGCT | 1 cut(s) | 35 |
| Alw21I | GWGCWC | 2 cut(s) | 87, 205 |
| Alw44I | GTGCAC | 2 cut(s) | 83, 201 |
| AoxI | GGCC | 2 cut(s) | 19, 229 |
| ApaLI | GTGCAC | 2 cut(s) | 83, 201 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 257 |
| BaeGI | GKGCMC | 2 cut(s) | 87, 205 |
| BanI | GGYRCC | 1 cut(s) | 391 |
| BanII | GRGCYC | 1 cut(s) | 284 |
| BbsI | GAAGAC | 1 cut(s) | 250 |
| Bbv12I | GWGCWC | 2 cut(s) | 87, 205 |
| BccI | CCATC | 4 cut(s) | 121, 154, 206, 419 |
| BciVI | GTATCC | 1 cut(s) | 209 |
| BfuI | GTATCC | 1 cut(s) | 209 |
| BglII | AGATCT | 2 cut(s) | 69, 172 |
| BisI | GCNGC | 1 cut(s) | 354 |
| BlsI | GCNGC | 1 cut(s) | 355 |
| BmiI | GGNNCC | 1 cut(s) | 393 |
| BmsI | GCATC | 1 cut(s) | 175 |
| BpiI | GAAGAC | 1 cut(s) | 250 |
| BpuEI | CTTGAG | 1 cut(s) | 197 |
| Bse1I | ACTGG | 2 cut(s) | 22, 393 |
| BseGI | GGATG | 2 cut(s) | 132, 217 |
| BseNI | ACTGG | 2 cut(s) | 22, 393 |
| BseSI | GKGCMC | 2 cut(s) | 87, 205 |
| Bsh1236I | CGCG | 1 cut(s) | 356 |
| BshFI | GGCC | 2 cut(s) | 21, 231 |
| BshNI | GGYRCC | 1 cut(s) | 391 |
| BsiHKAI | GWGCWC | 2 cut(s) | 87, 205 |
| BslFI | GGGAC | 1 cut(s) | 399 |
| BsmFI | GGGAC | 1 cut(s) | 399 |
| BsnI | GGCC | 2 cut(s) | 21, 231 |
| Bsp1286I | GDGCHC | 3 cut(s) | 87, 205, 284 |
| Bsp143I | GATC | 2 cut(s) | 69, 172 |
| BspACI | CCGC | 1 cut(s) | 354 |
| BspANI | GGCC | 2 cut(s) | 21, 231 |
| BspFNI | CGCG | 1 cut(s) | 356 |
| BspLI | GGNNCC | 1 cut(s) | 393 |
| BspT107I | GGYRCC | 1 cut(s) | 391 |
| BsrI | ACTGG | 2 cut(s) | 22, 393 |
| BssMI | GATC | 2 cut(s) | 69, 172 |
| Bst4CI | ACNGT | 3 cut(s) | 97, 200, 221 |
| BstF5I | GGATG | 2 cut(s) | 132, 217 |
| BstFNI | CGCG | 1 cut(s) | 356 |
| BstKTI | GATC | 2 cut(s) | 72, 175 |
| BstMBI | GATC | 2 cut(s) | 69, 172 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstSLI | GKGCMC | 2 cut(s) | 87, 205 |
| BstUI | CGCG | 1 cut(s) | 356 |
| BstV2I | GAAGAC | 1 cut(s) | 250 |
| BstX2I | RGATCY | 2 cut(s) | 69, 172 |
| BstYI | RGATCY | 2 cut(s) | 69, 172 |
| BsuI | GTATCC | 1 cut(s) | 209 |
| BsuRI | GGCC | 2 cut(s) | 21, 231 |
| BtsCI | GGATG | 2 cut(s) | 132, 217 |
| BtsI | GCAGTG | 1 cut(s) | 138 |
| BtsIMutI | CAGTG | 3 cut(s) | 29, 138, 205 |
| CviAII | CATG | 1 cut(s) | 235 |
| CviJI | RGCY | 5 cut(s) | 21, 35, 181, 231, 282 |
| CviKI_1 | RGCY | 5 cut(s) | 21, 35, 181, 231, 282 |
| DpnI | GATC | 2 cut(s) | 71, 174 |
| DpnII | GATC | 2 cut(s) | 69, 172 |
| Eco24I | GRGCYC | 1 cut(s) | 284 |
| EcoT38I | GRGCYC | 1 cut(s) | 284 |
| FaeI | CATG | 1 cut(s) | 238 |
| FaiI | YATR | 9 cut(s) | 196, 209, 236, 300, 306, 311, 336, 411, 422 |
| FaqI | GGGAC | 1 cut(s) | 399 |
| FatI | CATG | 1 cut(s) | 234 |
| Fnu4HI | GCNGC | 1 cut(s) | 354 |
| FokI | GGATG | 2 cut(s) | 139, 224 |
| FriOI | GRGCYC | 1 cut(s) | 284 |
| Fsp4HI | GCNGC | 1 cut(s) | 354 |
| GluI | GCNGC | 1 cut(s) | 354 |
| HaeIII | GGCC | 2 cut(s) | 21, 231 |
| Hin1II | CATG | 1 cut(s) | 238 |
| HinfI | GANTC | 1 cut(s) | 358 |
| Hpy166II | GTNNAC | 2 cut(s) | 85, 203 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 176, 368 |
| Hpy8I | GTNNAC | 2 cut(s) | 85, 203 |
| HpyAV | CCTTC | 1 cut(s) | 247 |
| HpyCH4III | ACNGT | 3 cut(s) | 97, 200, 221 |
| HpyCH4V | TGCA | 5 cut(s) | 11, 27, 85, 188, 203 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| Hsp92II | CATG | 1 cut(s) | 238 |
| Kzo9I | GATC | 2 cut(s) | 69, 172 |
| LpnPI | CCDG | 6 cut(s) | 35, 90, 195, 353, 374, 408 |
| LweI | GCATC | 1 cut(s) | 175 |
| MaeIII | GTNAC | 2 cut(s) | 62, 190 |
| MalI | GATC | 2 cut(s) | 71, 174 |
| MboI | GATC | 2 cut(s) | 69, 172 |
| MboII | GAAGA | 1 cut(s) | 250 |
| MflI | RGATCY | 2 cut(s) | 69, 172 |
| MhlI | GDGCHC | 3 cut(s) | 87, 205, 284 |
| MlyI | GAGTC | 1 cut(s) | 352 |
| MnlI | CCTC | 4 cut(s) | 33, 115, 221, 237 |
| MroXI | GAANNNNTTC | 1 cut(s) | 257 |
| MvnI | CGCG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NdeII | GATC | 2 cut(s) | 69, 172 |
| NlaIII | CATG | 1 cut(s) | 238 |
| NlaIV | GGNNCC | 1 cut(s) | 393 |
| PdmI | GAANNNNTTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 1 cut(s) | 355 |
| PleI | GAGTC | 1 cut(s) | 352 |
| PpsI | GAGTC | 1 cut(s) | 352 |
| PsiI | TTATAA | 1 cut(s) | 306 |
| PspN4I | GGNNCC | 1 cut(s) | 393 |
| PsuI | RGATCY | 2 cut(s) | 69, 172 |
| SatI | GCNGC | 1 cut(s) | 354 |
| Sau3AI | GATC | 2 cut(s) | 69, 172 |
| SchI | GAGTC | 1 cut(s) | 352 |
| SduI | GDGCHC | 3 cut(s) | 87, 205, 284 |
| SetI | ASST | 4 cut(s) | 37, 44, 92, 258 |
| SfaNI | GCATC | 1 cut(s) | 175 |
| SmlI | CTYRAG | 1 cut(s) | 176 |
| SmoI | CTYRAG | 1 cut(s) | 176 |
| SsiI | CCGC | 1 cut(s) | 354 |
| TaaI | ACNGT | 3 cut(s) | 97, 200, 221 |
| TauI | GCSGC | 1 cut(s) | 356 |
| TscAI | CASTG | 3 cut(s) | 29, 138, 205 |
| TspDTI | ATGAA | 1 cut(s) | 66 |
| TspRI | CASTG | 3 cut(s) | 29, 138, 205 |
| VneI | GTGCAC | 2 cut(s) | 83, 201 |
| XmnI | GAANNNNTTC | 1 cut(s) | 257 |