Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 32 | 2.7e-06 | PPR repeat family |
| PPR_3 | PF13812 | 7 - 65 | 2.8e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 14 - 46 | 1.8e-08 | PPR repeat |
| PPR_2 | PF13041 | 19 - 67 | 1.1e-16 | PPR repeat family |
| PPR | PF01535 | 22 - 48 | 1.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 51 - 82 | 1.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 53 - 102 | 3.4e-14 | PPR repeat family |
| TPR_24 | PF23276 | 55 - 142 | 2.6e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 85 - 117 | 4.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 96 - 137 | 3.2e-08 | PPR repeat family |
| PPR_1 | PF12854 | 124 - 144 | 2.1e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 430, 443 |
| AcoI | YGGCCR | 3 cut(s) | 253, 429, 453 |
| AfaI | GTAC | 2 cut(s) | 145, 178 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 451 |
| AjnI | CCWGG | 1 cut(s) | 431 |
| AluBI | AGCT | 2 cut(s) | 259, 413 |
| AluI | AGCT | 2 cut(s) | 259, 413 |
| AlwI | GGATC | 2 cut(s) | 430, 443 |
| AoxI | GGCC | 4 cut(s) | 114, 253, 429, 453 |
| ApeKI | GCWGC | 1 cut(s) | 45 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 138, 153 |
| AsuC2I | CCSGG | 2 cut(s) | 122, 204 |
| BalI | TGGCCA | 2 cut(s) | 255, 431 |
| BamHI | GGATCC | 1 cut(s) | 435 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| BbvI | GCAGC | 1 cut(s) | 32 |
| BccI | CCATC | 4 cut(s) | 287, 340, 392, 395 |
| BceAI | ACGGC | 1 cut(s) | 339 |
| BciT130I | CCWGG | 1 cut(s) | 433 |
| BciVI | GTATCC | 1 cut(s) | 459 |
| BcnI | CCSGG | 2 cut(s) | 122, 204 |
| BfaI | CTAG | 1 cut(s) | 460 |
| BfuI | GTATCC | 1 cut(s) | 459 |
| BglII | AGATCT | 1 cut(s) | 265 |
| BisI | GCNGC | 1 cut(s) | 46 |
| BlpI | GCTNAGC | 1 cut(s) | 35 |
| BlsI | GCNGC | 1 cut(s) | 47 |
| BmcAI | AGTACT | 1 cut(s) | 178 |
| Bme1390I | CCNGG | 3 cut(s) | 122, 204, 433 |
| BmiI | GGNNCC | 1 cut(s) | 437 |
| BmrFI | CCNGG | 3 cut(s) | 122, 204, 433 |
| BmsI | GCATC | 1 cut(s) | 231 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 35 |
| BpuMI | CCSGG | 2 cut(s) | 122, 204 |
| BsaJI | CCNNGG | 1 cut(s) | 203 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 451 |
| BseBI | CCWGG | 1 cut(s) | 433 |
| BseDI | CCNNGG | 1 cut(s) | 203 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseXI | GCAGC | 1 cut(s) | 32 |
| BshFI | GGCC | 4 cut(s) | 116, 255, 431, 455 |
| BsiSI | CCGG | 3 cut(s) | 121, 203, 452 |
| BsiWI | CGTACG | 1 cut(s) | 143 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BsnI | GGCC | 4 cut(s) | 116, 255, 431, 455 |
| Bsp143I | GATC | 3 cut(s) | 25, 265, 435 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 35 |
| BspANI | GGCC | 4 cut(s) | 116, 255, 431, 455 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspLI | GGNNCC | 1 cut(s) | 437 |
| BspPI | GGATC | 2 cut(s) | 430, 443 |
| BssECI | CCNNGG | 1 cut(s) | 203 |
| BssMI | GATC | 3 cut(s) | 25, 265, 435 |
| Bst2UI | CCWGG | 1 cut(s) | 433 |
| Bst4CI | ACNGT | 3 cut(s) | 92, 176, 191 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 45 |
| BstC8I | GCNNGC | 1 cut(s) | 257 |
| BstDEI | CTNAG | 3 cut(s) | 35, 237, 338 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstKTI | GATC | 3 cut(s) | 28, 268, 438 |
| BstMBI | GATC | 3 cut(s) | 25, 265, 435 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 45 |
| BstNI | CCWGG | 1 cut(s) | 433 |
| BstSCI | CCNGG | 3 cut(s) | 120, 202, 431 |
| BstV1I | GCAGC | 1 cut(s) | 32 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 2 cut(s) | 265, 435 |
| BstYI | RGATCY | 2 cut(s) | 265, 435 |
| BsuI | GTATCC | 1 cut(s) | 459 |
| BsuRI | GGCC | 4 cut(s) | 116, 255, 431, 455 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| BtsI | GCAGTG | 1 cut(s) | 333 |
| BtsIMutI | CAGTG | 1 cut(s) | 333 |
| Cac8I | GCNNGC | 1 cut(s) | 257 |
| Csp6I | GTAC | 2 cut(s) | 144, 177 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 309, 344 |
| CviAII | CATG | 1 cut(s) | 49 |
| CviJI | RGCY | 7 cut(s) | 45, 116, 255, 259, 413, 431, 455 |
| CviKI_1 | RGCY | 7 cut(s) | 45, 116, 255, 259, 413, 431, 455 |
| CviQI | GTAC | 2 cut(s) | 144, 177 |
| DdeI | CTNAG | 3 cut(s) | 35, 237, 338 |
| DpnI | GATC | 3 cut(s) | 27, 267, 437 |
| DpnII | GATC | 3 cut(s) | 25, 265, 435 |
| EaeI | YGGCCR | 3 cut(s) | 253, 429, 453 |
| EcoRII | CCWGG | 1 cut(s) | 431 |
| FaeI | CATG | 1 cut(s) | 52 |
| FaiI | YATR | 8 cut(s) | 50, 74, 99, 273, 279, 299, 301, 406 |
| FatI | CATG | 1 cut(s) | 48 |
| FauNDI | CATATG | 1 cut(s) | 299 |
| Fnu4HI | GCNGC | 1 cut(s) | 46 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 46 |
| FspBI | CTAG | 1 cut(s) | 460 |
| GluI | GCNGC | 1 cut(s) | 46 |
| HaeIII | GGCC | 4 cut(s) | 116, 255, 431, 455 |
| HapII | CCGG | 3 cut(s) | 121, 203, 452 |
| Hin1II | CATG | 1 cut(s) | 52 |
| HpaII | CCGG | 3 cut(s) | 121, 203, 452 |
| Hpy188I | TCNGA | 1 cut(s) | 240 |
| Hpy188III | TCNNGA | 3 cut(s) | 131, 158, 263 |
| HpyCH4III | ACNGT | 3 cut(s) | 92, 176, 191 |
| HpyCH4V | TGCA | 3 cut(s) | 48, 244, 408 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 45 |
| HpyF3I | CTNAG | 3 cut(s) | 35, 237, 338 |
| Hsp92II | CATG | 1 cut(s) | 52 |
| Kzo9I | GATC | 3 cut(s) | 25, 265, 435 |
| LpnPI | CCDG | 9 cut(s) | 116, 134, 216, 269, 276, 399, 418, 445, 453 |
| Lsp1109I | GCAGC | 1 cut(s) | 32 |
| LweI | GCATC | 1 cut(s) | 231 |
| MaeI | CTAG | 1 cut(s) | 460 |
| MaeIII | GTNAC | 1 cut(s) | 68 |
| MalI | GATC | 3 cut(s) | 27, 267, 437 |
| MboI | GATC | 3 cut(s) | 25, 265, 435 |
| MboII | GAAGA | 2 cut(s) | 260, 362 |
| MflI | RGATCY | 2 cut(s) | 265, 435 |
| MlsI | TGGCCA | 2 cut(s) | 255, 431 |
| MluCI | AATT | 2 cut(s) | 332, 378 |
| MluNI | TGGCCA | 2 cut(s) | 255, 431 |
| MnlI | CCTC | 1 cut(s) | 106 |
| Mox20I | TGGCCA | 2 cut(s) | 255, 431 |
| MroXI | GAANNNNTTC | 2 cut(s) | 138, 153 |
| MscI | TGGCCA | 2 cut(s) | 255, 431 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| Msp20I | TGGCCA | 2 cut(s) | 255, 431 |
| MspI | CCGG | 3 cut(s) | 121, 203, 452 |
| MspR9I | CCNGG | 3 cut(s) | 122, 204, 433 |
| MvaI | CCWGG | 1 cut(s) | 433 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 45 |
| NciI | CCSGG | 2 cut(s) | 122, 204 |
| NdeI | CATATG | 1 cut(s) | 299 |
| NdeII | GATC | 3 cut(s) | 25, 265, 435 |
| NlaIII | CATG | 1 cut(s) | 52 |
| NlaIV | GGNNCC | 1 cut(s) | 437 |
| PdmI | GAANNNNTTC | 2 cut(s) | 138, 153 |
| Pfl23II | CGTACG | 1 cut(s) | 143 |
| PkrI | GCNGC | 1 cut(s) | 47 |
| Psp6I | CCWGG | 1 cut(s) | 431 |
| PspGI | CCWGG | 1 cut(s) | 431 |
| PspLI | CGTACG | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 1 cut(s) | 437 |
| PsuI | RGATCY | 2 cut(s) | 265, 435 |
| RsaI | GTAC | 2 cut(s) | 145, 178 |
| RsaNI | GTAC | 2 cut(s) | 144, 177 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SatI | GCNGC | 1 cut(s) | 46 |
| Sau3AI | GATC | 3 cut(s) | 25, 265, 435 |
| ScaI | AGTACT | 1 cut(s) | 178 |
| ScrFI | CCNGG | 3 cut(s) | 122, 204, 433 |
| SetI | ASST | 4 cut(s) | 250, 261, 415, 461 |
| SfaNI | GCATC | 1 cut(s) | 231 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| Sse9I | AATT | 2 cut(s) | 332, 378 |
| SspI | AATATT | 1 cut(s) | 373 |
| SspMI | CTAG | 1 cut(s) | 460 |
| StyD4I | CCNGG | 3 cut(s) | 120, 202, 431 |
| TaaI | ACNGT | 3 cut(s) | 92, 176, 191 |
| TasI | AATT | 2 cut(s) | 332, 378 |
| TatI | WGTACW | 1 cut(s) | 176 |
| TscAI | CASTG | 1 cut(s) | 333 |
| TseI | GCWGC | 1 cut(s) | 45 |
| TspDTI | ATGAA | 3 cut(s) | 21, 99, 260 |
| TspGWI | ACGGA | 1 cut(s) | 161 |
| TspRI | CASTG | 1 cut(s) | 333 |
| XmnI | GAANNNNTTC | 2 cut(s) | 138, 153 |
| XspI | CTAG | 1 cut(s) | 460 |
| ZrmI | AGTACT | 1 cut(s) | 178 |