pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 76 - 125 | 3.3e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 77 - 109 | 8.9e-06 | PPR repeat |
| PPR_2 | PF13041 | 81 - 128 | 6e-14 | PPR repeat family |
| PPR_3 | PF13812 | 104 - 160 | 7.9e-15 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 112 - 144 | 4.1e-11 | PPR repeat |
| PPR_2 | PF13041 | 118 - 164 | 8.5e-11 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 323 |
| AccII | CGCG | 1 cut(s) | 505 |
| AcuI | CTGAAG | 1 cut(s) | 318 |
| AfaI | GTAC | 2 cut(s) | 98, 105 |
| AflIII | ACRYGT | 1 cut(s) | 503 |
| AgsI | TTSAA | 6 cut(s) | 8, 70, 181, 223, 236, 413 |
| AluBI | AGCT | 2 cut(s) | 296, 407 |
| AluI | AGCT | 2 cut(s) | 296, 407 |
| AoxI | GGCC | 2 cut(s) | 14, 376 |
| ApeKI | GCWGC | 3 cut(s) | 302, 305, 404 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 37, 69 |
| AspS9I | GGNCC | 1 cut(s) | 376 |
| AsuHPI | GGTGA | 2 cut(s) | 238, 247 |
| BauI | CACGAG | 1 cut(s) | 59 |
| BbvI | GCAGC | 3 cut(s) | 314, 317, 416 |
| BccI | CCATC | 3 cut(s) | 95, 421, 479 |
| BfuAI | ACCTGC | 1 cut(s) | 323 |
| BisI | GCNGC | 3 cut(s) | 303, 306, 405 |
| BlsI | GCNGC | 3 cut(s) | 304, 307, 406 |
| BmgT120I | GGNCC | 1 cut(s) | 376 |
| BmsI | GCATC | 1 cut(s) | 484 |
| BseGI | GGATG | 1 cut(s) | 499 |
| BseMII | CTCAG | 1 cut(s) | 433 |
| BseXI | GCAGC | 3 cut(s) | 314, 317, 416 |
| Bsh1236I | CGCG | 1 cut(s) | 505 |
| BshFI | GGCC | 2 cut(s) | 16, 378 |
| BsnI | GGCC | 2 cut(s) | 16, 378 |
| Bsp1407I | TGTACA | 1 cut(s) | 96 |
| BspANI | GGCC | 2 cut(s) | 16, 378 |
| BspCNI | CTCAG | 1 cut(s) | 432 |
| BspFNI | CGCG | 1 cut(s) | 505 |
| BspHI | TCATGA | 1 cut(s) | 159 |
| BspMI | ACCTGC | 1 cut(s) | 323 |
| BsrGI | TGTACA | 1 cut(s) | 96 |
| BssSI | CACGAG | 1 cut(s) | 59 |
| Bst2BI | CACGAG | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 1 cut(s) | 482 |
| BstAUI | TGTACA | 1 cut(s) | 96 |
| BstDEI | CTNAG | 2 cut(s) | 149, 419 |
| BstF5I | GGATG | 1 cut(s) | 499 |
| BstFNI | CGCG | 1 cut(s) | 505 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 302 |
| BstUI | CGCG | 1 cut(s) | 505 |
| BstV1I | GCAGC | 3 cut(s) | 314, 317, 416 |
| BsuRI | GGCC | 2 cut(s) | 16, 378 |
| BtsCI | GGATG | 1 cut(s) | 499 |
| BveI | ACCTGC | 1 cut(s) | 323 |
| CciI | TCATGA | 1 cut(s) | 159 |
| Cfr13I | GGNCC | 1 cut(s) | 376 |
| CseI | GACGC | 1 cut(s) | 105 |
| Csp6I | GTAC | 2 cut(s) | 97, 104 |
| CviAII | CATG | 1 cut(s) | 160 |
| CviJI | RGCY | 9 cut(s) | 16, 86, 212, 273, 296, 343, 378, 407, 448 |
| CviKI_1 | RGCY | 9 cut(s) | 16, 86, 212, 273, 296, 343, 378, 407, 448 |
| CviQI | GTAC | 2 cut(s) | 97, 104 |
| DdeI | CTNAG | 2 cut(s) | 149, 419 |
| Eco57I | CTGAAG | 1 cut(s) | 318 |
| EcoO109I | RGGNCCY | 1 cut(s) | 376 |
| FaeI | CATG | 1 cut(s) | 163 |
| FaiI | YATR | 3 cut(s) | 155, 161, 465 |
| FatI | CATG | 1 cut(s) | 159 |
| Fnu4HI | GCNGC | 3 cut(s) | 303, 306, 405 |
| FokI | GGATG | 1 cut(s) | 506 |
| Fsp4HI | GCNGC | 3 cut(s) | 303, 306, 405 |
| GluI | GCNGC | 3 cut(s) | 303, 306, 405 |
| HaeIII | GGCC | 2 cut(s) | 16, 378 |
| HgaI | GACGC | 1 cut(s) | 105 |
| Hin1II | CATG | 1 cut(s) | 163 |
| HincII | GTYRAC | 1 cut(s) | 56 |
| HindII | GTYRAC | 1 cut(s) | 56 |
| HphI | GGTGA | 2 cut(s) | 238, 247 |
| Hpy166II | GTNNAC | 1 cut(s) | 56 |
| Hpy188I | TCNGA | 2 cut(s) | 285, 422 |
| Hpy188III | TCNNGA | 4 cut(s) | 61, 134, 160, 233 |
| Hpy8I | GTNNAC | 1 cut(s) | 56 |
| HpyAV | CCTTC | 1 cut(s) | 262 |
| HpyCH4III | ACNGT | 1 cut(s) | 482 |
| HpyCH4V | TGCA | 2 cut(s) | 404, 497 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 302 |
| HpyF3I | CTNAG | 2 cut(s) | 149, 419 |
| Hsp92II | CATG | 1 cut(s) | 163 |
| LpnPI | CCDG | 3 cut(s) | 147, 318, 392 |
| Lsp1109I | GCAGC | 3 cut(s) | 314, 317, 416 |
| LweI | GCATC | 1 cut(s) | 484 |
| MaeIII | GTNAC | 3 cut(s) | 244, 352, 392 |
| MboII | GAAGA | 1 cut(s) | 211 |
| MluCI | AATT | 6 cut(s) | 65, 126, 186, 215, 309, 413 |
| MluI | ACGCGT | 1 cut(s) | 503 |
| MnlI | CCTC | 4 cut(s) | 27, 34, 51, 322 |
| MseI | TTAA | 1 cut(s) | 489 |
| MvnI | CGCG | 1 cut(s) | 505 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 302 |
| NlaIII | CATG | 1 cut(s) | 163 |
| NmuCI | GTSAC | 2 cut(s) | 244, 352 |
| PagI | TCATGA | 1 cut(s) | 159 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 181 |
| PkrI | GCNGC | 3 cut(s) | 304, 307, 406 |
| PspPI | GGNCC | 1 cut(s) | 376 |
| RsaI | GTAC | 2 cut(s) | 98, 105 |
| RsaNI | GTAC | 2 cut(s) | 97, 104 |
| SaqAI | TTAA | 1 cut(s) | 489 |
| SatI | GCNGC | 3 cut(s) | 303, 306, 405 |
| Sau96I | GGNCC | 1 cut(s) | 376 |
| SetI | ASST | 4 cut(s) | 254, 298, 337, 409 |
| SfaNI | GCATC | 1 cut(s) | 484 |
| Sse9I | AATT | 6 cut(s) | 65, 126, 186, 215, 309, 413 |
| TaaI | ACNGT | 1 cut(s) | 482 |
| TasI | AATT | 6 cut(s) | 65, 126, 186, 215, 309, 413 |
| TatI | WGTACW | 2 cut(s) | 96, 103 |
| Tru1I | TTAA | 1 cut(s) | 489 |
| Tru9I | TTAA | 1 cut(s) | 489 |
| TseFI | GTSAC | 2 cut(s) | 244, 352 |
| TseI | GCWGC | 3 cut(s) | 302, 305, 404 |
| Tsp45I | GTSAC | 2 cut(s) | 244, 352 |
| TspDTI | ATGAA | 1 cut(s) | 176 |
| TspGWI | ACGGA | 1 cut(s) | 23 |