Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 37 | 9e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 45 | 1.2e-07 | PPR repeat family |
| PPR_2 | PF13041 | 43 - 92 | 5e-16 | PPR repeat family |
| PPR_3 | PF13812 | 71 - 123 | 2.4e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 74 - 107 | 1.5e-13 | PPR repeat |
| PPR_2 | PF13041 | 78 - 126 | 7.3e-17 | PPR repeat family |
| PPR | PF01535 | 82 - 111 | 1.9e-10 | PPR repeat |
| PPR_2 | PF13041 | 113 - 160 | 2.4e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 137 |
| AccII | CGCG | 1 cut(s) | 443 |
| AciI | CCGC | 2 cut(s) | 441, 443 |
| AclWI | GGATC | 2 cut(s) | 204, 491 |
| AcoI | YGGCCR | 1 cut(s) | 13 |
| AflIII | ACRYGT | 1 cut(s) | 357 |
| AgsI | TTSAA | 2 cut(s) | 169, 185 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 270, 302 |
| AluBI | AGCT | 5 cut(s) | 8, 173, 188, 351, 503 |
| AluI | AGCT | 5 cut(s) | 8, 173, 188, 351, 503 |
| Alw26I | GTCTC | 1 cut(s) | 383 |
| AlwI | GGATC | 2 cut(s) | 204, 491 |
| AoxI | GGCC | 2 cut(s) | 13, 280 |
| ApeKI | GCWGC | 2 cut(s) | 188, 427 |
| AsuHPI | GGTGA | 1 cut(s) | 221 |
| BalI | TGGCCA | 1 cut(s) | 15 |
| BbvI | GCAGC | 2 cut(s) | 175, 439 |
| BccI | CCATC | 2 cut(s) | 47, 100 |
| BcoDI | GTCTC | 1 cut(s) | 383 |
| BfaI | CTAG | 2 cut(s) | 284, 483 |
| BisI | GCNGC | 2 cut(s) | 189, 428 |
| BlsI | GCNGC | 2 cut(s) | 190, 429 |
| BmsI | GCATC | 3 cut(s) | 133, 436, 458 |
| BsaJI | CCNNGG | 1 cut(s) | 441 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 270, 300 |
| Bse3DI | GCAATG | 2 cut(s) | 151, 408 |
| BseDI | CCNNGG | 1 cut(s) | 441 |
| BseGI | GGATG | 3 cut(s) | 58, 124, 451 |
| BseMI | GCAATG | 2 cut(s) | 151, 408 |
| BseMII | CTCAG | 2 cut(s) | 89, 322 |
| BseXI | GCAGC | 2 cut(s) | 175, 439 |
| BsgI | GTGCAG | 1 cut(s) | 446 |
| Bsh1236I | CGCG | 1 cut(s) | 443 |
| BshFI | GGCC | 2 cut(s) | 15, 282 |
| BslFI | GGGAC | 1 cut(s) | 237 |
| BsmAI | GTCTC | 1 cut(s) | 383 |
| BsmFI | GGGAC | 1 cut(s) | 237 |
| BsnI | GGCC | 2 cut(s) | 15, 282 |
| Bsp143I | GATC | 3 cut(s) | 196, 496, 524 |
| BspACI | CCGC | 2 cut(s) | 441, 443 |
| BspANI | GGCC | 2 cut(s) | 15, 282 |
| BspCNI | CTCAG | 2 cut(s) | 90, 321 |
| BspFNI | CGCG | 1 cut(s) | 443 |
| BspPI | GGATC | 2 cut(s) | 204, 491 |
| BsrDI | GCAATG | 2 cut(s) | 151, 408 |
| BssECI | CCNNGG | 1 cut(s) | 441 |
| BssMI | GATC | 3 cut(s) | 196, 496, 524 |
| Bst4CI | ACNGT | 2 cut(s) | 344, 386 |
| Bst6I | CTCTTC | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 2 cut(s) | 98, 308 |
| BstDSI | CCRYGG | 1 cut(s) | 441 |
| BstF5I | GGATG | 3 cut(s) | 58, 124, 451 |
| BstFNI | CGCG | 1 cut(s) | 443 |
| BstKTI | GATC | 3 cut(s) | 199, 499, 527 |
| BstMAI | GTCTC | 1 cut(s) | 383 |
| BstMBI | GATC | 3 cut(s) | 196, 496, 524 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 279 |
| BstUI | CGCG | 1 cut(s) | 443 |
| BstV1I | GCAGC | 2 cut(s) | 175, 439 |
| BstX2I | RGATCY | 2 cut(s) | 196, 496 |
| BstYI | RGATCY | 2 cut(s) | 196, 496 |
| BsuRI | GGCC | 2 cut(s) | 15, 282 |
| BtgI | CCRYGG | 1 cut(s) | 441 |
| BtsCI | GGATG | 3 cut(s) | 58, 124, 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 391 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Cfr42I | CCGCGG | 1 cut(s) | 444 |
| DdeI | CTNAG | 2 cut(s) | 98, 308 |
| DpnI | GATC | 3 cut(s) | 198, 498, 526 |
| DpnII | GATC | 3 cut(s) | 196, 496, 524 |
| EaeI | YGGCCR | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 315 |
| EarI | CTCTTC | 1 cut(s) | 315 |
| Eco147I | AGGCCT | 1 cut(s) | 282 |
| EcoT22I | ATGCAT | 1 cut(s) | 451 |
| FaiI | YATR | 4 cut(s) | 39, 137, 155, 532 |
| FaqI | GGGAC | 1 cut(s) | 237 |
| Fnu4HI | GCNGC | 2 cut(s) | 189, 428 |
| FokI | GGATG | 3 cut(s) | 65, 111, 458 |
| Fsp4HI | GCNGC | 2 cut(s) | 189, 428 |
| FspBI | CTAG | 2 cut(s) | 284, 483 |
| GluI | GCNGC | 2 cut(s) | 189, 428 |
| HaeIII | GGCC | 2 cut(s) | 15, 282 |
| HindIII | AAGCTT | 1 cut(s) | 6 |
| HinfI | GANTC | 1 cut(s) | 259 |
| HphI | GGTGA | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 1 cut(s) | 311 |
| Hpy188III | TCNNGA | 2 cut(s) | 290, 483 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 2 cut(s) | 344, 386 |
| HpyCH4IV | ACGT | 2 cut(s) | 35, 359 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 63, 124, 144, 191, 273, 427, 449 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 279 |
| HpyF3I | CTNAG | 2 cut(s) | 98, 308 |
| HpySE526I | ACGT | 2 cut(s) | 35, 359 |
| KspI | CCGCGG | 1 cut(s) | 444 |
| Kzo9I | GATC | 3 cut(s) | 196, 496, 524 |
| LpnPI | CCDG | 3 cut(s) | 159, 416, 513 |
| Lsp1109I | GCAGC | 2 cut(s) | 175, 439 |
| LweI | GCATC | 3 cut(s) | 133, 436, 458 |
| MaeI | CTAG | 2 cut(s) | 284, 483 |
| MaeII | ACGT | 2 cut(s) | 35, 359 |
| MalI | GATC | 3 cut(s) | 198, 498, 526 |
| MboI | GATC | 3 cut(s) | 196, 496, 524 |
| MboII | GAAGA | 1 cut(s) | 332 |
| MflI | RGATCY | 2 cut(s) | 196, 496 |
| MlsI | TGGCCA | 1 cut(s) | 15 |
| MluCI | AATT | 5 cut(s) | 25, 92, 138, 250, 468 |
| MluNI | TGGCCA | 1 cut(s) | 15 |
| MnlI | CCTC | 3 cut(s) | 272, 320, 362 |
| Mox20I | TGGCCA | 1 cut(s) | 15 |
| Mph1103I | ATGCAT | 1 cut(s) | 451 |
| MscI | TGGCCA | 1 cut(s) | 15 |
| MseI | TTAA | 3 cut(s) | 240, 249, 254 |
| MslI | CAYNNNNRTG | 1 cut(s) | 234 |
| Msp20I | TGGCCA | 1 cut(s) | 15 |
| MspA1I | CMGCKG | 1 cut(s) | 443 |
| MvnI | CGCG | 1 cut(s) | 443 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 279 |
| NdeII | GATC | 3 cut(s) | 196, 496, 524 |
| NsiI | ATGCAT | 1 cut(s) | 451 |
| PceI | AGGCCT | 1 cut(s) | 282 |
| PfeI | GAWTC | 1 cut(s) | 259 |
| PkrI | GCNGC | 2 cut(s) | 190, 429 |
| PsiI | TTATAA | 1 cut(s) | 137 |
| PsuI | RGATCY | 2 cut(s) | 196, 496 |
| RseI | CAYNNNNRTG | 1 cut(s) | 234 |
| SacII | CCGCGG | 1 cut(s) | 444 |
| SaqAI | TTAA | 3 cut(s) | 240, 249, 254 |
| SatI | GCNGC | 2 cut(s) | 189, 428 |
| Sau3AI | GATC | 3 cut(s) | 196, 496, 524 |
| SetI | ASST | 7 cut(s) | 10, 38, 175, 190, 353, 362, 505 |
| SfaNI | GCATC | 3 cut(s) | 133, 436, 458 |
| Sfr303I | CCGCGG | 1 cut(s) | 444 |
| SgrBI | CCGCGG | 1 cut(s) | 444 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 234 |
| Sse9I | AATT | 5 cut(s) | 25, 92, 138, 250, 468 |
| SseBI | AGGCCT | 1 cut(s) | 282 |
| SsiI | CCGC | 2 cut(s) | 441, 443 |
| SspI | AATATT | 1 cut(s) | 133 |
| SspMI | CTAG | 2 cut(s) | 284, 483 |
| StuI | AGGCCT | 1 cut(s) | 282 |
| TaaI | ACNGT | 2 cut(s) | 344, 386 |
| TaiI | ACGT | 2 cut(s) | 38, 362 |
| TaqI | TCGA | 1 cut(s) | 367 |
| TasI | AATT | 5 cut(s) | 25, 92, 138, 250, 468 |
| TfiI | GAWTC | 1 cut(s) | 259 |
| Tru1I | TTAA | 3 cut(s) | 240, 249, 254 |
| Tru9I | TTAA | 3 cut(s) | 240, 249, 254 |
| TscAI | CASTG | 1 cut(s) | 391 |
| TseI | GCWGC | 2 cut(s) | 188, 427 |
| TspDTI | ATGAA | 1 cut(s) | 404 |
| TspRI | CASTG | 1 cut(s) | 391 |
| XbaI | TCTAGA | 1 cut(s) | 482 |
| XspI | CTAG | 2 cut(s) | 284, 483 |
| Zsp2I | ATGCAT | 1 cut(s) | 451 |