Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 4 - 36 | 4.8e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 1.3e-10 | PPR repeat family |
| TPR_24 | PF23276 | 24 - 110 | 3.6e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 40 - 71 | 1.6e-10 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 1.4e-14 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 1.2e-07 | PPR repeat |
| PPR_2 | PF13041 | 79 - 123 | 1.1e-13 | PPR repeat family |
| PPR | PF01535 | 82 - 109 | 2.7e-07 | PPR repeat |
| PPR_1 | PF12854 | 84 - 106 | 5.8e-07 | PPR repeat |
| PPR_3 | PF13812 | 123 - 171 | 2.8e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 124 - 154 | 2.1e-13 | PPR repeat |
| PPR_2 | PF13041 | 126 - 174 | 1.5e-17 | PPR repeat family |
| PPR | PF01535 | 130 - 159 | 1.7e-10 | PPR repeat |
| PPR_1 | PF12854 | 157 - 189 | 8.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 165 - 206 | 5.8e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 417 |
| AciI | CCGC | 3 cut(s) | 80, 385, 656 |
| AclWI | GGATC | 1 cut(s) | 635 |
| AfaI | GTAC | 1 cut(s) | 372 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 670 |
| AgsI | TTSAA | 9 cut(s) | 40, 101, 113, 310, 437, 560, 681, 711, 721 |
| AluBI | AGCT | 2 cut(s) | 767, 807 |
| AluI | AGCT | 2 cut(s) | 767, 807 |
| Alw26I | GTCTC | 1 cut(s) | 527 |
| AlwI | GGATC | 1 cut(s) | 635 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AspS9I | GGNCC | 1 cut(s) | 492 |
| AvaII | GGWCC | 1 cut(s) | 492 |
| BanII | GRGCYC | 1 cut(s) | 227 |
| BccI | CCATC | 1 cut(s) | 67 |
| BcoDI | GTCTC | 1 cut(s) | 527 |
| BfaI | CTAG | 1 cut(s) | 659 |
| BfmI | CTRYAG | 1 cut(s) | 585 |
| BisI | GCNGC | 1 cut(s) | 656 |
| BlsI | GCNGC | 1 cut(s) | 657 |
| Bme18I | GGWCC | 1 cut(s) | 492 |
| BmgT120I | GGNCC | 1 cut(s) | 492 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmsI | GCATC | 2 cut(s) | 580, 602 |
| BpuEI | CTTGAG | 1 cut(s) | 590 |
| Bsa29I | ATCGAT | 1 cut(s) | 366 |
| BsaJI | CCNNGG | 2 cut(s) | 228, 511 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 670 |
| BseCI | ATCGAT | 1 cut(s) | 366 |
| BseDI | CCNNGG | 2 cut(s) | 228, 511 |
| BseGI | GGATG | 2 cut(s) | 78, 479 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 670 |
| BseMII | CTCAG | 2 cut(s) | 443, 790 |
| BseRI | GAGGAG | 2 cut(s) | 20, 189 |
| BshVI | ATCGAT | 1 cut(s) | 366 |
| BsiSI | CCGG | 1 cut(s) | 644 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 670 |
| BsmAI | GTCTC | 1 cut(s) | 527 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp1407I | TGTACA | 1 cut(s) | 370 |
| Bsp143I | GATC | 2 cut(s) | 205, 640 |
| Bsp19I | CCATGG | 1 cut(s) | 228 |
| BspACI | CCGC | 3 cut(s) | 80, 385, 656 |
| BspCNI | CTCAG | 2 cut(s) | 444, 789 |
| BspDI | ATCGAT | 1 cut(s) | 366 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspMAI | CTGCAG | 1 cut(s) | 589 |
| BspPI | GGATC | 1 cut(s) | 635 |
| BsrGI | TGTACA | 1 cut(s) | 370 |
| BssECI | CCNNGG | 2 cut(s) | 228, 511 |
| BssMI | GATC | 2 cut(s) | 205, 640 |
| BssT1I | CCWWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 161, 530 |
| BstAUI | TGTACA | 1 cut(s) | 370 |
| BstDEI | CTNAG | 2 cut(s) | 452, 776 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 668 |
| BstF5I | GGATG | 2 cut(s) | 78, 479 |
| BstKTI | GATC | 2 cut(s) | 208, 643 |
| BstMAI | GTCTC | 1 cut(s) | 527 |
| BstMBI | GATC | 2 cut(s) | 205, 640 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 382 |
| BstSFI | CTRYAG | 1 cut(s) | 585 |
| BstX2I | RGATCY | 1 cut(s) | 640 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 94, 489 |
| BstYI | RGATCY | 1 cut(s) | 640 |
| Bsu15I | ATCGAT | 1 cut(s) | 366 |
| BsuTUI | ATCGAT | 1 cut(s) | 366 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtsCI | GGATG | 2 cut(s) | 78, 479 |
| BtsIMutI | CAGTG | 1 cut(s) | 535 |
| Cfr13I | GGNCC | 1 cut(s) | 492 |
| ClaI | ATCGAT | 1 cut(s) | 366 |
| Csp6I | GTAC | 1 cut(s) | 371 |
| CviAII | CATG | 5 cut(s) | 229, 407, 422, 540, 728 |
| CviQI | GTAC | 1 cut(s) | 371 |
| DdeI | CTNAG | 2 cut(s) | 452, 776 |
| DpnI | GATC | 2 cut(s) | 207, 642 |
| DpnII | GATC | 2 cut(s) | 205, 640 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 417 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 417 |
| Eco130I | CCWWGG | 1 cut(s) | 228 |
| Eco24I | GRGCYC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 1 cut(s) | 492 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 668 |
| EcoT14I | CCWWGG | 1 cut(s) | 228 |
| EcoT22I | ATGCAT | 1 cut(s) | 595 |
| EcoT38I | GRGCYC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 228 |
| FaeI | CATG | 5 cut(s) | 232, 410, 425, 543, 731 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 552, 584 |
| FatI | CATG | 5 cut(s) | 228, 406, 421, 539, 727 |
| Fnu4HI | GCNGC | 1 cut(s) | 656 |
| FokI | GGATG | 2 cut(s) | 85, 486 |
| FriOI | GRGCYC | 1 cut(s) | 227 |
| Fsp4HI | GCNGC | 1 cut(s) | 656 |
| FspBI | CTAG | 1 cut(s) | 659 |
| GluI | GCNGC | 1 cut(s) | 656 |
| HapII | CCGG | 1 cut(s) | 644 |
| Hin1II | CATG | 5 cut(s) | 232, 410, 425, 543, 731 |
| HinfI | GANTC | 2 cut(s) | 109, 403 |
| HpaII | CCGG | 1 cut(s) | 644 |
| Hpy188I | TCNGA | 3 cut(s) | 243, 512, 779 |
| Hpy188III | TCNNGA | 2 cut(s) | 338, 560 |
| HpyAV | CCTTC | 3 cut(s) | 62, 622, 784 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 161, 530 |
| HpyCH4V | TGCA | 4 cut(s) | 273, 587, 593, 755 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 382 |
| HpyF3I | CTNAG | 2 cut(s) | 452, 776 |
| Hsp92II | CATG | 5 cut(s) | 232, 410, 425, 543, 731 |
| Kzo9I | GATC | 2 cut(s) | 205, 640 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 6 cut(s) | 141, 205, 351, 657, 746, 793 |
| LweI | GCATC | 2 cut(s) | 580, 602 |
| MaeI | CTAG | 1 cut(s) | 659 |
| MaeIII | GTNAC | 1 cut(s) | 346 |
| MalI | GATC | 2 cut(s) | 207, 642 |
| MboI | GATC | 2 cut(s) | 205, 640 |
| MflI | RGATCY | 1 cut(s) | 640 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MluCI | AATT | 2 cut(s) | 432, 605 |
| MmeI | TCCRAC | 1 cut(s) | 470 |
| MnlI | CCTC | 7 cut(s) | 41, 167, 181, 330, 506, 567, 664 |
| Mph1103I | ATGCAT | 1 cut(s) | 595 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MseI | TTAA | 2 cut(s) | 428, 521 |
| MspA1I | CMGCKG | 1 cut(s) | 807 |
| MspI | CCGG | 1 cut(s) | 644 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 382 |
| NcoI | CCATGG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 205, 640 |
| NlaIII | CATG | 5 cut(s) | 232, 410, 425, 543, 731 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NsiI | ATGCAT | 1 cut(s) | 595 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 2 cut(s) | 109, 403 |
| PflFI | GACNNNGTC | 1 cut(s) | 414 |
| PkrI | GCNGC | 1 cut(s) | 657 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PspPI | GGNCC | 1 cut(s) | 492 |
| PstI | CTGCAG | 1 cut(s) | 589 |
| PsuI | RGATCY | 1 cut(s) | 640 |
| PsyI | GACNNNGTC | 1 cut(s) | 414 |
| PvuII | CAGCTG | 1 cut(s) | 807 |
| RsaI | GTAC | 1 cut(s) | 372 |
| RsaNI | GTAC | 1 cut(s) | 371 |
| SaqAI | TTAA | 2 cut(s) | 428, 521 |
| SatI | GCNGC | 1 cut(s) | 656 |
| Sau3AI | GATC | 2 cut(s) | 205, 640 |
| Sau96I | GGNCC | 1 cut(s) | 492 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SetI | ASST | 6 cut(s) | 16, 497, 666, 765, 769, 809 |
| SfaNI | GCATC | 2 cut(s) | 580, 602 |
| SfcI | CTRYAG | 1 cut(s) | 585 |
| SinI | GGWCC | 1 cut(s) | 492 |
| SmlI | CTYRAG | 1 cut(s) | 569 |
| SmoI | CTYRAG | 1 cut(s) | 569 |
| Sse9I | AATT | 2 cut(s) | 432, 605 |
| SsiI | CCGC | 3 cut(s) | 80, 385, 656 |
| SspMI | CTAG | 1 cut(s) | 659 |
| StyI | CCWWGG | 1 cut(s) | 228 |
| TaaI | ACNGT | 3 cut(s) | 136, 161, 530 |
| TaqI | TCGA | 3 cut(s) | 5, 288, 366 |
| TasI | AATT | 2 cut(s) | 432, 605 |
| TatI | WGTACW | 1 cut(s) | 370 |
| TauI | GCSGC | 1 cut(s) | 658 |
| TfiI | GAWTC | 2 cut(s) | 109, 403 |
| Tru1I | TTAA | 2 cut(s) | 428, 521 |
| Tru9I | TTAA | 2 cut(s) | 428, 521 |
| TscAI | CASTG | 1 cut(s) | 535 |
| TspDTI | ATGAA | 3 cut(s) | 197, 395, 563 |
| TspRI | CASTG | 1 cut(s) | 535 |
| Tth111I | GACNNNGTC | 1 cut(s) | 414 |
| VpaK11BI | GGWCC | 1 cut(s) | 492 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 668 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |
| XspI | CTAG | 1 cut(s) | 659 |
| Zsp2I | ATGCAT | 1 cut(s) | 595 |