Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 1 - 104 | 6e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 2 - 53 | 1e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 5 - 36 | 8.3e-12 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 6.4e-19 | PPR repeat family |
| PPR | PF01535 | 12 - 41 | 1.7e-09 | PPR repeat |
| PPR_1 | PF12854 | 39 - 72 | 5.5e-12 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 4.7e-16 | PPR repeat family |
| PPR | PF01535 | 46 - 76 | 2.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 115 - 156 | 9.4e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 124 |
| AclI | AACGTT | 1 cut(s) | 464 |
| AfaI | GTAC | 2 cut(s) | 172, 343 |
| AgsI | TTSAA | 2 cut(s) | 323, 415 |
| Alw26I | GTCTC | 1 cut(s) | 287 |
| AoxI | GGCC | 1 cut(s) | 217 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 407 |
| AsuC2I | CCSGG | 1 cut(s) | 221 |
| BanI | GGYRCC | 1 cut(s) | 124 |
| BcnI | CCSGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 1 cut(s) | 287 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BmsI | GCATC | 1 cut(s) | 253 |
| BpuMI | CCSGG | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 2 cut(s) | 157, 220 |
| BseDI | CCNNGG | 2 cut(s) | 157, 220 |
| BseGI | GGATG | 3 cut(s) | 13, 268, 288 |
| BseMII | CTCAG | 1 cut(s) | 103 |
| BshFI | GGCC | 1 cut(s) | 219 |
| BshNI | GGYRCC | 1 cut(s) | 124 |
| BsiSI | CCGG | 1 cut(s) | 220 |
| BslFI | GGGAC | 1 cut(s) | 237 |
| BsmAI | GTCTC | 1 cut(s) | 287 |
| BsmFI | GGGAC | 1 cut(s) | 237 |
| BsnI | GGCC | 1 cut(s) | 219 |
| Bsp19I | CCATGG | 1 cut(s) | 157 |
| BspANI | GGCC | 1 cut(s) | 219 |
| BspCNI | CTCAG | 1 cut(s) | 102 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BspT107I | GGYRCC | 1 cut(s) | 124 |
| BssECI | CCNNGG | 2 cut(s) | 157, 220 |
| BssT1I | CCWWGG | 1 cut(s) | 157 |
| Bst4CI | ACNGT | 2 cut(s) | 241, 329 |
| Bst6I | CTCTTC | 1 cut(s) | 285 |
| BstDEI | CTNAG | 1 cut(s) | 89 |
| BstDSI | CCRYGG | 1 cut(s) | 157 |
| BstF5I | GGATG | 3 cut(s) | 13, 268, 288 |
| BstMAI | GTCTC | 1 cut(s) | 287 |
| BstNSI | RCATGY | 1 cut(s) | 166 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BsuRI | GGCC | 1 cut(s) | 219 |
| BtgI | CCRYGG | 1 cut(s) | 157 |
| BtsCI | GGATG | 3 cut(s) | 13, 268, 288 |
| Csp6I | GTAC | 2 cut(s) | 171, 342 |
| CviAII | CATG | 3 cut(s) | 158, 163, 383 |
| CviJI | RGCY | 3 cut(s) | 86, 191, 219 |
| CviKI_1 | RGCY | 3 cut(s) | 86, 191, 219 |
| CviQI | GTAC | 2 cut(s) | 171, 342 |
| DdeI | CTNAG | 1 cut(s) | 89 |
| Eam1104I | CTCTTC | 1 cut(s) | 285 |
| EarI | CTCTTC | 1 cut(s) | 285 |
| Eco130I | CCWWGG | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 1 cut(s) | 157 |
| ErhI | CCWWGG | 1 cut(s) | 157 |
| FaeI | CATG | 3 cut(s) | 161, 166, 386 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 395, 427 |
| FaqI | GGGAC | 1 cut(s) | 237 |
| FatI | CATG | 3 cut(s) | 157, 162, 382 |
| FokI | GGATG | 3 cut(s) | 20, 275, 295 |
| HaeIII | GGCC | 1 cut(s) | 219 |
| HapII | CCGG | 1 cut(s) | 220 |
| Hin1II | CATG | 3 cut(s) | 161, 166, 386 |
| HincII | GTYRAC | 1 cut(s) | 468 |
| HindII | GTYRAC | 1 cut(s) | 468 |
| HinfI | GANTC | 3 cut(s) | 109, 225, 295 |
| HpaI | GTTAAC | 1 cut(s) | 468 |
| HpaII | CCGG | 1 cut(s) | 220 |
| Hpy166II | GTNNAC | 1 cut(s) | 468 |
| Hpy188III | TCNNGA | 1 cut(s) | 412 |
| Hpy8I | GTNNAC | 1 cut(s) | 468 |
| HpyAV | CCTTC | 2 cut(s) | 5, 397 |
| HpyCH4III | ACNGT | 2 cut(s) | 241, 329 |
| HpyCH4IV | ACGT | 1 cut(s) | 464 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 273, 354, 382 |
| HpyF3I | CTNAG | 1 cut(s) | 89 |
| HpySE526I | ACGT | 1 cut(s) | 464 |
| Hsp92II | CATG | 3 cut(s) | 161, 166, 386 |
| KspAI | GTTAAC | 1 cut(s) | 468 |
| LpnPI | CCDG | 5 cut(s) | 107, 141, 233, 246, 456 |
| LweI | GCATC | 1 cut(s) | 253 |
| MaeII | ACGT | 1 cut(s) | 464 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MboII | GAAGA | 2 cut(s) | 197, 302 |
| MfeI | CAATTG | 1 cut(s) | 318 |
| MluCI | AATT | 1 cut(s) | 318 |
| MlyI | GAGTC | 3 cut(s) | 103, 219, 289 |
| MnlI | CCTC | 6 cut(s) | 61, 66, 73, 98, 110, 304 |
| MroXI | GAANNNNTTC | 1 cut(s) | 407 |
| MseI | TTAA | 5 cut(s) | 104, 152, 366, 419, 467 |
| MspI | CCGG | 1 cut(s) | 220 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| MunI | CAATTG | 1 cut(s) | 318 |
| NciI | CCSGG | 1 cut(s) | 221 |
| NcoI | CCATGG | 1 cut(s) | 157 |
| NlaIII | CATG | 3 cut(s) | 161, 166, 386 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| NspI | RCATGY | 1 cut(s) | 166 |
| PdmI | GAANNNNTTC | 1 cut(s) | 407 |
| PleI | GAGTC | 3 cut(s) | 103, 219, 289 |
| PpsI | GAGTC | 3 cut(s) | 103, 219, 289 |
| Psp1406I | AACGTT | 1 cut(s) | 464 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| RsaI | GTAC | 2 cut(s) | 172, 343 |
| RsaNI | GTAC | 2 cut(s) | 171, 342 |
| SaqAI | TTAA | 5 cut(s) | 104, 152, 366, 419, 467 |
| SchI | GAGTC | 3 cut(s) | 103, 219, 289 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SetI | ASST | 7 cut(s) | 16, 38, 121, 130, 200, 280, 467 |
| SfaNI | GCATC | 1 cut(s) | 253 |
| Sse9I | AATT | 1 cut(s) | 318 |
| SspI | AATATT | 2 cut(s) | 306, 374 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 157 |
| TaaI | ACNGT | 2 cut(s) | 241, 329 |
| TaiI | ACGT | 1 cut(s) | 467 |
| TasI | AATT | 1 cut(s) | 318 |
| Tru1I | TTAA | 5 cut(s) | 104, 152, 366, 419, 467 |
| Tru9I | TTAA | 5 cut(s) | 104, 152, 366, 419, 467 |
| TspDTI | ATGAA | 3 cut(s) | 24, 347, 384 |
| TspGWI | ACGGA | 1 cut(s) | 92 |
| XceI | RCATGY | 1 cut(s) | 166 |
| XmnI | GAANNNNTTC | 1 cut(s) | 407 |