Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 20 - 187 | 3.1e-50 | TIR domain |
| TIR_2 | PF13676 | 23 - 119 | 1.2e-14 | TIR domain |
| NB-ARC | PF00931 | 206 - 371 | 8e-30 | NB-ARC domain |
| LRR_8 | PF13855 | 577 - 633 | 9.6e-10 | Leucine rich repeat |
| LRR_14 | PF23598 | 579 - 712 | 1.3e-12 | Leucine-rich repeat region |
| LRR_RPS2 | PF23247 | 866 - 962 | 1.4e-08 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 950 - 1068 | 4.2e-12 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 501 |
| Acc16I | TGCGCA | 1 cut(s) | 1659 |
| Acc36I | ACCTGC | 1 cut(s) | 1282 |
| AccI | GTMKAC | 3 cut(s) | 678, 745, 1180 |
| AciI | CCGC | 3 cut(s) | 1702, 2321, 2499 |
| AclWI | GGATC | 3 cut(s) | 347, 360, 2352 |
| AcoI | YGGCCR | 3 cut(s) | 468, 1572, 1643 |
| AcsI | RAATTY | 5 cut(s) | 801, 941, 957, 2755, 2837 |
| AcuI | CTGAAG | 5 cut(s) | 1305, 1436, 1614, 1734, 2525 |
| AcyI | GRCGYC | 1 cut(s) | 1265 |
| AfaI | GTAC | 6 cut(s) | 366, 1304, 2721, 2810, 2905, 3174 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1381 |
| AflII | CTTAAG | 2 cut(s) | 1736, 2678 |
| AflIII | ACRYGT | 1 cut(s) | 718 |
| AhlI | ACTAGT | 1 cut(s) | 1835 |
| AjnI | CCWGG | 2 cut(s) | 899, 2659 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2787, 2819, 3132, 3164 |
| Alw21I | GWGCWC | 2 cut(s) | 190, 730 |
| Alw26I | GTCTC | 6 cut(s) | 842, 1272, 1778, 1871, 2162, 2337 |
| Alw44I | GTGCAC | 1 cut(s) | 726 |
| AlwI | GGATC | 3 cut(s) | 347, 360, 2352 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 26, 477, 1414 |
| Ama87I | CYCGRG | 1 cut(s) | 1781 |
| AoxI | GGCC | 4 cut(s) | 3, 468, 1572, 1643 |
| ApaLI | GTGCAC | 1 cut(s) | 726 |
| ApeKI | GCWGC | 3 cut(s) | 439, 1371, 2385 |
| ApoI | RAATTY | 5 cut(s) | 801, 941, 957, 2755, 2837 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3225, 3257 |
| AseI | ATTAAT | 3 cut(s) | 1580, 1653, 3044 |
| AspLEI | GCGC | 2 cut(s) | 646, 1660 |
| AspS9I | GGNCC | 2 cut(s) | 2525, 2891 |
| AsuC2I | CCSGG | 1 cut(s) | 1382 |
| AsuHPI | GGTGA | 7 cut(s) | 33, 724, 997, 2174, 2425, 2660, 3153 |
| AsuII | TTCGAA | 2 cut(s) | 114, 3206 |
| AvaI | CYCGRG | 1 cut(s) | 1781 |
| AvaII | GGWCC | 2 cut(s) | 2525, 2891 |
| BaeGI | GKGCMC | 2 cut(s) | 730, 1213 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3164, 3197 |
| BalI | TGGCCA | 2 cut(s) | 470, 1645 |
| BamHI | GGATCC | 1 cut(s) | 352 |
| BanII | GRGCYC | 1 cut(s) | 190 |
| BbsI | GAAGAC | 1 cut(s) | 3012 |
| Bbv12I | GWGCWC | 2 cut(s) | 190, 730 |
| BbvI | GCAGC | 3 cut(s) | 451, 1358, 2397 |
| BccI | CCATC | 6 cut(s) | 1150, 1529, 2080, 2215, 2387, 2737 |
| BceAI | ACGGC | 1 cut(s) | 1559 |
| BciT130I | CCWGG | 2 cut(s) | 901, 2661 |
| BclI | TGATCA | 1 cut(s) | 2931 |
| BcnI | CCSGG | 1 cut(s) | 1382 |
| BcoDI | GTCTC | 6 cut(s) | 842, 1272, 1778, 1871, 2162, 2337 |
| BcuI | ACTAGT | 1 cut(s) | 1835 |
| BfaI | CTAG | 6 cut(s) | 867, 1164, 1509, 1836, 2102, 3135 |
| BfmI | CTRYAG | 2 cut(s) | 2383, 2435 |
| BfrI | CTTAAG | 2 cut(s) | 1736, 2678 |
| BfuAI | ACCTGC | 1 cut(s) | 1282 |
| BglII | AGATCT | 2 cut(s) | 172, 1822 |
| BisI | GCNGC | 4 cut(s) | 440, 1372, 2321, 2386 |
| BlpI | GCTNAGC | 1 cut(s) | 1319 |
| BlsI | GCNGC | 4 cut(s) | 441, 1373, 2322, 2387 |
| Bme1390I | CCNGG | 3 cut(s) | 901, 1382, 2661 |
| Bme18I | GGWCC | 2 cut(s) | 2525, 2891 |
| BmeT110I | CYCGRG | 1 cut(s) | 1781 |
| BmgT120I | GGNCC | 2 cut(s) | 2525, 2891 |
| BmiI | GGNNCC | 3 cut(s) | 354, 898, 2527 |
| BmrFI | CCNGG | 3 cut(s) | 901, 1382, 2661 |
| BmrI | ACTGGG | 2 cut(s) | 1394, 2146 |
| BmsI | GCATC | 9 cut(s) | 38, 442, 974, 1539, 1994, 2227, 2518, 3108, 3202 |
| BmuI | ACTGGG | 2 cut(s) | 1394, 2146 |
| BpiI | GAAGAC | 1 cut(s) | 3012 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2949, 2981 |
| BpmI | CTGGAG | 1 cut(s) | 302 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1319 |
| Bpu14I | TTCGAA | 2 cut(s) | 114, 3206 |
| BpuEI | CTTGAG | 3 cut(s) | 814, 1961, 1970 |
| BpuMI | CCSGG | 1 cut(s) | 1382 |
| BsaHI | GRCGYC | 1 cut(s) | 1265 |
| BsaJI | CCNNGG | 5 cut(s) | 708, 2050, 2485, 2660, 3125 |
| BsaWI | WCCGGW | 2 cut(s) | 334, 2392 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1381 |
| Bse1I | ACTGG | 7 cut(s) | 471, 1180, 1184, 1400, 2141, 2200, 3187 |
| Bse3DI | GCAATG | 3 cut(s) | 2119, 2782, 2941 |
| BseBI | CCWGG | 2 cut(s) | 901, 2661 |
| BseDI | CCNNGG | 5 cut(s) | 708, 2050, 2485, 2660, 3125 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1381 |
| BseMI | GCAATG | 3 cut(s) | 2119, 2782, 2941 |
| BseMII | CTCAG | 3 cut(s) | 393, 1260, 2348 |
| BseNI | ACTGG | 7 cut(s) | 471, 1180, 1184, 1400, 2141, 2200, 3187 |
| BseRI | GAGGAG | 2 cut(s) | 893, 2615 |
| BseSI | GKGCMC | 2 cut(s) | 730, 1213 |
| BseXI | GCAGC | 3 cut(s) | 451, 1358, 2397 |
| BseYI | CCCAGC | 1 cut(s) | 962 |
| BsgI | GTGCAG | 3 cut(s) | 116, 458, 565 |
| Bsh1285I | CGRYCG | 1 cut(s) | 127 |
| BshFI | GGCC | 4 cut(s) | 5, 470, 1574, 1645 |
| BsiEI | CGRYCG | 1 cut(s) | 127 |
| BsiHKAI | GWGCWC | 2 cut(s) | 190, 730 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1781 |
| BsiSI | CCGG | 3 cut(s) | 335, 1382, 2393 |
| BslFI | GGGAC | 3 cut(s) | 1480, 2147, 2511 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1381 |
| BsmAI | GTCTC | 6 cut(s) | 842, 1272, 1778, 1871, 2162, 2337 |
| BsmBI | CGTCTC | 1 cut(s) | 1272 |
| BsmFI | GGGAC | 3 cut(s) | 1480, 2147, 2511 |
| BsmI | GAATGC | 3 cut(s) | 646, 1175, 2028 |
| BsnI | GGCC | 4 cut(s) | 5, 470, 1574, 1645 |
| BsoBI | CYCGRG | 1 cut(s) | 1781 |
| Bsp119I | TTCGAA | 2 cut(s) | 114, 3206 |
| Bsp1286I | GDGCHC | 3 cut(s) | 190, 730, 1213 |
| Bsp1407I | TGTACA | 1 cut(s) | 1302 |
| Bsp143I | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1319 |
| Bsp19I | CCATGG | 2 cut(s) | 708, 2050 |
| BspACI | CCGC | 3 cut(s) | 1702, 2321, 2499 |
| BspANI | GGCC | 4 cut(s) | 5, 470, 1574, 1645 |
| BspCNI | CTCAG | 3 cut(s) | 394, 1259, 2347 |
| BspHI | TCATGA | 1 cut(s) | 1035 |
| BspLI | GGNNCC | 3 cut(s) | 354, 898, 2527 |
| BspMAI | CTGCAG | 1 cut(s) | 2387 |
| BspMI | ACCTGC | 1 cut(s) | 1282 |
| BspPI | GGATC | 3 cut(s) | 347, 360, 2352 |
| BspQI | GCTCTTC | 2 cut(s) | 856, 3095 |
| BspT104I | TTCGAA | 2 cut(s) | 114, 3206 |
| BspTI | CTTAAG | 2 cut(s) | 1736, 2678 |
| BsrDI | GCAATG | 3 cut(s) | 2119, 2782, 2941 |
| BsrGI | TGTACA | 1 cut(s) | 1302 |
| BsrI | ACTGG | 7 cut(s) | 471, 1180, 1184, 1400, 2141, 2200, 3187 |
| BssECI | CCNNGG | 5 cut(s) | 708, 2050, 2485, 2660, 3125 |
| BssMI | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| BssNI | GRCGYC | 1 cut(s) | 1265 |
| BssT1I | CCWWGG | 3 cut(s) | 708, 2050, 3125 |
| Bst2UI | CCWGG | 2 cut(s) | 901, 2661 |
| Bst4CI | ACNGT | 8 cut(s) | 667, 1410, 2112, 2439, 2486, 2724, 2739, 3067 |
| Bst6I | CTCTTC | 8 cut(s) | 136, 374, 856, 1710, 2160, 2308, 2972, 3095 |
| BstACI | GRCGYC | 1 cut(s) | 1265 |
| BstAFI | CTTAAG | 2 cut(s) | 1736, 2678 |
| BstAUI | TGTACA | 1 cut(s) | 1302 |
| BstBI | TTCGAA | 2 cut(s) | 114, 3206 |
| BstC8I | GCNNGC | 6 cut(s) | 234, 621, 1514, 1706, 2501, 3055 |
| BstDSI | CCRYGG | 3 cut(s) | 708, 2050, 2485 |
| BstHHI | GCGC | 2 cut(s) | 646, 1660 |
| BstKTI | GATC | 7 cut(s) | 12, 127, 175, 355, 1825, 2360, 2934 |
| BstMAI | GTCTC | 6 cut(s) | 842, 1272, 1778, 1871, 2162, 2337 |
| BstMBI | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| BstMCI | CGRYCG | 1 cut(s) | 127 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 608, 1196, 3127 |
| BstNI | CCWGG | 2 cut(s) | 901, 2661 |
| BstNSI | RCATGY | 3 cut(s) | 722, 1223, 1459 |
| BstSCI | CCNGG | 3 cut(s) | 899, 1380, 2659 |
| BstSFI | CTRYAG | 2 cut(s) | 2383, 2435 |
| BstSLI | GKGCMC | 2 cut(s) | 730, 1213 |
| BstV1I | GCAGC | 3 cut(s) | 451, 1358, 2397 |
| BstV2I | GAAGAC | 1 cut(s) | 3012 |
| BstX2I | RGATCY | 4 cut(s) | 172, 352, 1822, 2357 |
| BstYI | RGATCY | 4 cut(s) | 172, 352, 1822, 2357 |
| BsuRI | GGCC | 4 cut(s) | 5, 470, 1574, 1645 |
| BtgI | CCRYGG | 3 cut(s) | 708, 2050, 2485 |
| BtsI | GCAGTG | 1 cut(s) | 449 |
| BtsIMutI | CAGTG | 7 cut(s) | 399, 449, 663, 1173, 1190, 2413, 3072 |
| BveI | ACCTGC | 1 cut(s) | 1282 |
| Cac8I | GCNNGC | 6 cut(s) | 234, 621, 1514, 1706, 2501, 3055 |
| CaiI | CAGNNNCTG | 3 cut(s) | 26, 477, 1414 |
| CciI | TCATGA | 1 cut(s) | 1035 |
| CfoI | GCGC | 2 cut(s) | 646, 1660 |
| Cfr13I | GGNCC | 2 cut(s) | 2525, 2891 |
| CseI | GACGC | 1 cut(s) | 1254 |
| Csp6I | GTAC | 6 cut(s) | 365, 1303, 2720, 2809, 2904, 3173 |
| CviQI | GTAC | 6 cut(s) | 365, 1303, 2720, 2809, 2904, 3173 |
| DpnI | GATC | 7 cut(s) | 11, 126, 174, 354, 1824, 2359, 2933 |
| DpnII | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| DraI | TTTAAA | 3 cut(s) | 459, 598, 1770 |
| EaeI | YGGCCR | 3 cut(s) | 468, 1572, 1643 |
| Eam1104I | CTCTTC | 8 cut(s) | 136, 374, 856, 1710, 2160, 2308, 2972, 3095 |
| EarI | CTCTTC | 8 cut(s) | 136, 374, 856, 1710, 2160, 2308, 2972, 3095 |
| Ecl136II | GAGCTC | 1 cut(s) | 188 |
| Eco130I | CCWWGG | 3 cut(s) | 708, 2050, 3125 |
| Eco24I | GRGCYC | 1 cut(s) | 190 |
| Eco32I | GATATC | 3 cut(s) | 371, 2085, 2293 |
| Eco47I | GGWCC | 2 cut(s) | 2525, 2891 |
| Eco53kI | GAGCTC | 1 cut(s) | 188 |
| Eco57I | CTGAAG | 5 cut(s) | 1305, 1436, 1614, 1734, 2525 |
| Eco88I | CYCGRG | 1 cut(s) | 1781 |
| EcoICRI | GAGCTC | 1 cut(s) | 188 |
| EcoRI | GAATTC | 1 cut(s) | 957 |
| EcoRII | CCWGG | 2 cut(s) | 899, 2659 |
| EcoRV | GATATC | 3 cut(s) | 371, 2085, 2293 |
| EcoT14I | CCWWGG | 3 cut(s) | 708, 2050, 3125 |
| EcoT22I | ATGCAT | 3 cut(s) | 1313, 1554, 2121 |
| EcoT38I | GRGCYC | 1 cut(s) | 190 |
| ErhI | CCWWGG | 3 cut(s) | 708, 2050, 3125 |
| Esp3I | CGTCTC | 1 cut(s) | 1272 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 776, 808, 1102, 1134 |
| FaqI | GGGAC | 3 cut(s) | 1480, 2147, 2511 |
| FauI | CCCGC | 1 cut(s) | 2492 |
| FauNDI | CATATG | 2 cut(s) | 2231, 2882 |
| FbaI | TGATCA | 1 cut(s) | 2931 |
| FblI | GTMKAC | 3 cut(s) | 678, 745, 1180 |
| Fnu4HI | GCNGC | 4 cut(s) | 440, 1372, 2321, 2386 |
| FriOI | GRGCYC | 1 cut(s) | 190 |
| Fsp4HI | GCNGC | 4 cut(s) | 440, 1372, 2321, 2386 |
| FspAI | RTGCGCAY | 1 cut(s) | 1659 |
| FspBI | CTAG | 6 cut(s) | 867, 1164, 1509, 1836, 2102, 3135 |
| FspI | TGCGCA | 1 cut(s) | 1659 |
| GlaI | GCGC | 2 cut(s) | 645, 1659 |
| GluI | GCNGC | 4 cut(s) | 440, 1372, 2321, 2386 |
| GsaI | CCCAGC | 1 cut(s) | 966 |
| GsuI | CTGGAG | 1 cut(s) | 302 |
| HaeIII | GGCC | 4 cut(s) | 5, 470, 1574, 1645 |
| HapII | CCGG | 3 cut(s) | 335, 1382, 2393 |
| HgaI | GACGC | 1 cut(s) | 1254 |
| HhaI | GCGC | 2 cut(s) | 646, 1660 |
| Hin1I | GRCGYC | 1 cut(s) | 1265 |
| Hin6I | GCGC | 2 cut(s) | 644, 1658 |
| HinP1I | GCGC | 2 cut(s) | 644, 1658 |
| HincII | GTYRAC | 2 cut(s) | 1604, 2193 |
| HindII | GTYRAC | 2 cut(s) | 1604, 2193 |
| HindIII | AAGCTT | 4 cut(s) | 393, 1503, 1884, 1946 |
| HpaI | GTTAAC | 1 cut(s) | 2193 |
| HpaII | CCGG | 3 cut(s) | 335, 1382, 2393 |
| HphI | GGTGA | 7 cut(s) | 33, 724, 997, 2174, 2425, 2660, 3153 |
| Hpy188I | TCNGA | 8 cut(s) | 361, 557, 1075, 1594, 1934, 2337, 2843, 2977 |
| HpyAV | CCTTC | 6 cut(s) | 48, 341, 2153, 2447, 2807, 3174 |
| HpyCH4III | ACNGT | 8 cut(s) | 667, 1410, 2112, 2439, 2486, 2724, 2739, 3067 |
| HpyCH4IV | ACGT | 1 cut(s) | 924 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 608, 1196, 3127 |
| HpySE526I | ACGT | 1 cut(s) | 924 |
| Hsp92I | GRCGYC | 1 cut(s) | 1265 |
| HspAI | GCGC | 2 cut(s) | 644, 1658 |
| Ksp22I | TGATCA | 1 cut(s) | 2931 |
| KspAI | GTTAAC | 1 cut(s) | 2193 |
| Kzo9I | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| LguI | GCTCTTC | 2 cut(s) | 856, 3095 |
| LmnI | GCTCC | 3 cut(s) | 52, 185, 2902 |
| Lsp1109I | GCAGC | 3 cut(s) | 451, 1358, 2397 |
| LweI | GCATC | 9 cut(s) | 38, 442, 974, 1539, 1994, 2227, 2518, 3108, 3202 |
| MaeI | CTAG | 6 cut(s) | 867, 1164, 1509, 1836, 2102, 3135 |
| MaeII | ACGT | 1 cut(s) | 924 |
| MaeIII | GTNAC | 8 cut(s) | 661, 1099, 1628, 2062, 2413, 2705, 2739, 3159 |
| MalI | GATC | 7 cut(s) | 11, 126, 174, 354, 1824, 2359, 2933 |
| MboI | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| MfeI | CAATTG | 3 cut(s) | 216, 237, 528 |
| MflI | RGATCY | 4 cut(s) | 172, 352, 1822, 2357 |
| MhlI | GDGCHC | 3 cut(s) | 190, 730, 1213 |
| MlsI | TGGCCA | 2 cut(s) | 470, 1645 |
| MluNI | TGGCCA | 2 cut(s) | 470, 1645 |
| MlyI | GAGTC | 7 cut(s) | 198, 1238, 1517, 1824, 2869, 2911, 3167 |
| MmeI | TCCRAC | 5 cut(s) | 580, 676, 1476, 2546, 3268 |
| Mox20I | TGGCCA | 2 cut(s) | 470, 1645 |
| Mph1103I | ATGCAT | 3 cut(s) | 1313, 1554, 2121 |
| MscI | TGGCCA | 2 cut(s) | 470, 1645 |
| MslI | CAYNNNNRTG | 4 cut(s) | 723, 2219, 2471, 3180 |
| Msp20I | TGGCCA | 2 cut(s) | 470, 1645 |
| MspCI | CTTAAG | 2 cut(s) | 1736, 2678 |
| MspI | CCGG | 3 cut(s) | 335, 1382, 2393 |
| MspR9I | CCNGG | 3 cut(s) | 901, 1382, 2661 |
| MunI | CAATTG | 3 cut(s) | 216, 237, 528 |
| Mva1269I | GAATGC | 3 cut(s) | 646, 1175, 2028 |
| MvaI | CCWGG | 2 cut(s) | 901, 2661 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 608, 1196, 3127 |
| NciI | CCSGG | 1 cut(s) | 1382 |
| NcoI | CCATGG | 2 cut(s) | 708, 2050 |
| NdeI | CATATG | 2 cut(s) | 2231, 2882 |
| NdeII | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| NlaIV | GGNNCC | 3 cut(s) | 354, 898, 2527 |
| NmuCI | GTSAC | 5 cut(s) | 661, 1099, 1628, 2413, 3159 |
| NsbI | TGCGCA | 1 cut(s) | 1659 |
| NsiI | ATGCAT | 3 cut(s) | 1313, 1554, 2121 |
| NspI | RCATGY | 3 cut(s) | 722, 1223, 1459 |
| NspV | TTCGAA | 2 cut(s) | 114, 3206 |
| PagI | TCATGA | 1 cut(s) | 1035 |
| PciI | ACATGT | 1 cut(s) | 718 |
| PciSI | GCTCTTC | 2 cut(s) | 856, 3095 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 120, 2448 |
| PctI | GAATGC | 3 cut(s) | 646, 1175, 2028 |
| PfeI | GAWTC | 9 cut(s) | 327, 536, 904, 1082, 1346, 1448, 1954, 2365, 2831 |
| PfoI | TCCNGGA | 1 cut(s) | 1380 |
| PkrI | GCNGC | 4 cut(s) | 441, 1373, 2322, 2387 |
| Ple19I | CGATCG | 1 cut(s) | 127 |
| PleI | GAGTC | 7 cut(s) | 198, 1238, 1517, 1823, 2868, 2911, 3166 |
| PpsI | GAGTC | 7 cut(s) | 198, 1238, 1517, 1823, 2868, 2911, 3166 |
| PscI | ACATGT | 1 cut(s) | 718 |
| PshBI | ATTAAT | 3 cut(s) | 1580, 1653, 3044 |
| PsiI | TTATAA | 1 cut(s) | 501 |
| Psp124BI | GAGCTC | 1 cut(s) | 190 |
| Psp6I | CCWGG | 2 cut(s) | 899, 2659 |
| PspFI | CCCAGC | 1 cut(s) | 962 |
| PspGI | CCWGG | 2 cut(s) | 899, 2659 |
| PspN4I | GGNNCC | 3 cut(s) | 354, 898, 2527 |
| PspPI | GGNCC | 2 cut(s) | 2525, 2891 |
| PstI | CTGCAG | 1 cut(s) | 2387 |
| PstNI | CAGNNNCTG | 3 cut(s) | 26, 477, 1414 |
| PsuI | RGATCY | 4 cut(s) | 172, 352, 1822, 2357 |
| PvuI | CGATCG | 1 cut(s) | 127 |
| RsaI | GTAC | 6 cut(s) | 366, 1304, 2721, 2810, 2905, 3174 |
| RsaNI | GTAC | 6 cut(s) | 365, 1303, 2720, 2809, 2904, 3173 |
| RseI | CAYNNNNRTG | 4 cut(s) | 723, 2219, 2471, 3180 |
| SacI | GAGCTC | 1 cut(s) | 190 |
| SapI | GCTCTTC | 2 cut(s) | 856, 3095 |
| SatI | GCNGC | 4 cut(s) | 440, 1372, 2321, 2386 |
| Sau3AI | GATC | 7 cut(s) | 9, 124, 172, 352, 1822, 2357, 2931 |
| Sau96I | GGNCC | 2 cut(s) | 2525, 2891 |
| SchI | GAGTC | 7 cut(s) | 198, 1238, 1517, 1824, 2869, 2911, 3167 |
| ScrFI | CCNGG | 3 cut(s) | 901, 1382, 2661 |
| SduI | GDGCHC | 3 cut(s) | 190, 730, 1213 |
| SfaNI | GCATC | 9 cut(s) | 38, 442, 974, 1539, 1994, 2227, 2518, 3108, 3202 |
| SfcI | CTRYAG | 2 cut(s) | 2383, 2435 |
| SfuI | TTCGAA | 2 cut(s) | 114, 3206 |
| SinI | GGWCC | 2 cut(s) | 2525, 2891 |
| SmiI | ATTTAAAT | 1 cut(s) | 1770 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 723, 2219, 2471, 3180 |
| SmlI | CTYRAG | 5 cut(s) | 793, 1736, 1940, 1949, 2678 |
| SmoI | CTYRAG | 5 cut(s) | 793, 1736, 1940, 1949, 2678 |
| SpeI | ACTAGT | 1 cut(s) | 1835 |
| SsiI | CCGC | 3 cut(s) | 1702, 2321, 2499 |
| SspI | AATATT | 3 cut(s) | 2176, 2351, 2910 |
| SspMI | CTAG | 6 cut(s) | 867, 1164, 1509, 1836, 2102, 3135 |
| SstI | GAGCTC | 1 cut(s) | 190 |
| StyD4I | CCNGG | 3 cut(s) | 899, 1380, 2659 |
| StyI | CCWWGG | 3 cut(s) | 708, 2050, 3125 |
| SwaI | ATTTAAAT | 1 cut(s) | 1770 |
| TaaI | ACNGT | 8 cut(s) | 667, 1410, 2112, 2439, 2486, 2724, 2739, 3067 |
| TaiI | ACGT | 1 cut(s) | 927 |
| TaqI | TCGA | 9 cut(s) | 8, 114, 269, 1216, 1991, 2589, 2956, 3206, 3281 |
| TatI | WGTACW | 2 cut(s) | 1302, 2719 |
| TauI | GCSGC | 1 cut(s) | 2323 |
| TfiI | GAWTC | 9 cut(s) | 327, 536, 904, 1082, 1346, 1448, 1954, 2365, 2831 |
| TscAI | CASTG | 7 cut(s) | 406, 449, 670, 1180, 1197, 2413, 3072 |
| TseFI | GTSAC | 5 cut(s) | 661, 1099, 1628, 2413, 3159 |
| TseI | GCWGC | 3 cut(s) | 439, 1371, 2385 |
| Tsp45I | GTSAC | 5 cut(s) | 661, 1099, 1628, 2413, 3159 |
| TspGWI | ACGGA | 2 cut(s) | 696, 2758 |
| TspRI | CASTG | 7 cut(s) | 406, 449, 670, 1180, 1197, 2413, 3072 |
| Vha464I | CTTAAG | 2 cut(s) | 1736, 2678 |
| VneI | GTGCAC | 1 cut(s) | 726 |
| VpaK11BI | GGWCC | 2 cut(s) | 2525, 2891 |
| VspI | ATTAAT | 3 cut(s) | 1580, 1653, 3044 |
| XapI | RAATTY | 5 cut(s) | 801, 941, 957, 2755, 2837 |
| XceI | RCATGY | 3 cut(s) | 722, 1223, 1459 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 51 |
| XmiI | GTMKAC | 3 cut(s) | 678, 745, 1180 |
| XspI | CTAG | 6 cut(s) | 867, 1164, 1509, 1836, 2102, 3135 |
| Zsp2I | ATGCAT | 3 cut(s) | 1313, 1554, 2121 |