pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 88 - 138 | 1.9e-10 | PPR repeat family |
| PPR_long | PF17177 | 102 - 213 | 5.8e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 114 - 170 | 6.4e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 123 - 154 | 8.4e-13 | PPR repeat |
| PPR_2 | PF13041 | 125 - 174 | 2.6e-18 | PPR repeat family |
| PPR | PF01535 | 128 - 158 | 4.9e-08 | PPR repeat |
| PPR_1 | PF12854 | 156 - 188 | 8e-11 | PPR repeat |
| PPR_2 | PF13041 | 160 - 209 | 1.9e-16 | PPR repeat family |
| PPR_3 | PF13812 | 184 - 242 | 1.2e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 191 - 224 | 1e-11 | PPR repeat |
| PPR_2 | PF13041 | 195 - 244 | 9.3e-19 | PPR repeat family |
| PPR | PF01535 | 198 - 228 | 5.1e-07 | PPR repeat |
| PPR_1 | PF12854 | 227 - 258 | 2.9e-09 | PPR repeat |
| PPR | PF01535 | 234 - 263 | 1.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 238 - 278 | 8.9e-12 | PPR repeat family |
| PPR_1 | PF12854 | 261 - 279 | 2.9e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 838 |
| AcoI | YGGCCR | 1 cut(s) | 631 |
| AcuI | CTGAAG | 1 cut(s) | 688 |
| AcyI | GRCGYC | 1 cut(s) | 142 |
| AfaI | GTAC | 1 cut(s) | 17 |
| AhlI | ACTAGT | 1 cut(s) | 529 |
| AluBI | AGCT | 2 cut(s) | 437, 647 |
| AluI | AGCT | 2 cut(s) | 437, 647 |
| AoxI | GGCC | 1 cut(s) | 631 |
| ApeKI | GCWGC | 2 cut(s) | 329, 434 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 119, 132, 256, 551 |
| AsuHPI | GGTGA | 1 cut(s) | 682 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 516, 549 |
| BalI | TGGCCA | 1 cut(s) | 633 |
| BbvCI | CCTCAGC | 1 cut(s) | 324 |
| BbvI | GCAGC | 2 cut(s) | 341, 446 |
| BccI | CCATC | 2 cut(s) | 451, 733 |
| BciVI | GTATCC | 1 cut(s) | 517 |
| BclI | TGATCA | 1 cut(s) | 535 |
| BcuI | ACTAGT | 1 cut(s) | 529 |
| BfaI | CTAG | 1 cut(s) | 530 |
| BfuI | GTATCC | 1 cut(s) | 517 |
| BglII | AGATCT | 1 cut(s) | 177 |
| BisI | GCNGC | 2 cut(s) | 330, 435 |
| BlsI | GCNGC | 2 cut(s) | 331, 436 |
| BmcAI | AGTACT | 1 cut(s) | 17 |
| BmiI | GGNNCC | 1 cut(s) | 186 |
| BmsI | GCATC | 3 cut(s) | 461, 686, 709 |
| BpmI | CTGGAG | 1 cut(s) | 567 |
| Bpu10I | CCTNAGC | 1 cut(s) | 324 |
| BsaBI | GATNNNNATC | 1 cut(s) | 251 |
| BsaHI | GRCGYC | 1 cut(s) | 142 |
| Bse1I | ACTGG | 1 cut(s) | 634 |
| Bse8I | GATNNNNATC | 1 cut(s) | 251 |
| BseGI | GGATG | 2 cut(s) | 476, 744 |
| BseJI | GATNNNNATC | 1 cut(s) | 251 |
| BseMII | CTCAG | 2 cut(s) | 188, 315 |
| BseNI | ACTGG | 1 cut(s) | 634 |
| BseXI | GCAGC | 2 cut(s) | 341, 446 |
| BseYI | CCCAGC | 1 cut(s) | 81 |
| BsgI | GTGCAG | 1 cut(s) | 453 |
| BshFI | GGCC | 1 cut(s) | 633 |
| BslFI | GGGAC | 1 cut(s) | 129 |
| BsmFI | GGGAC | 1 cut(s) | 129 |
| BsnI | GGCC | 1 cut(s) | 633 |
| Bsp143I | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| BspACI | CCGC | 1 cut(s) | 838 |
| BspANI | GGCC | 1 cut(s) | 633 |
| BspCNI | CTCAG | 2 cut(s) | 187, 316 |
| BspLI | GGNNCC | 1 cut(s) | 186 |
| BsrI | ACTGG | 1 cut(s) | 634 |
| BssMI | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| BssNI | GRCGYC | 1 cut(s) | 142 |
| Bst4CI | ACNGT | 4 cut(s) | 512, 812, 827, 833 |
| Bst6I | CTCTTC | 1 cut(s) | 557 |
| BstACI | GRCGYC | 1 cut(s) | 142 |
| BstC8I | GCNNGC | 1 cut(s) | 476 |
| BstDEI | CTNAG | 3 cut(s) | 174, 324, 449 |
| BstF5I | GGATG | 2 cut(s) | 476, 744 |
| BstKTI | GATC | 5 cut(s) | 180, 249, 538, 567, 873 |
| BstMBI | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 139, 148, 329, 630 |
| BstNSI | RCATGY | 1 cut(s) | 110 |
| BstV1I | GCAGC | 2 cut(s) | 341, 446 |
| BstX2I | RGATCY | 1 cut(s) | 177 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 760 |
| BstYI | RGATCY | 1 cut(s) | 177 |
| BsuI | GTATCC | 1 cut(s) | 517 |
| BsuRI | GGCC | 1 cut(s) | 633 |
| BtsCI | GGATG | 2 cut(s) | 476, 744 |
| BtsIMutI | CAGTG | 2 cut(s) | 436, 641 |
| Cac8I | GCNNGC | 1 cut(s) | 476 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 16 |
| CviAII | CATG | 3 cut(s) | 107, 415, 769 |
| CviQI | GTAC | 1 cut(s) | 16 |
| DdeI | CTNAG | 3 cut(s) | 174, 324, 449 |
| DpnI | GATC | 5 cut(s) | 179, 248, 537, 566, 872 |
| DpnII | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| EaeI | YGGCCR | 1 cut(s) | 631 |
| Eam1104I | CTCTTC | 1 cut(s) | 557 |
| EarI | CTCTTC | 1 cut(s) | 557 |
| Eco57I | CTGAAG | 1 cut(s) | 688 |
| FaeI | CATG | 3 cut(s) | 110, 418, 772 |
| FaiI | YATR | 9 cut(s) | 108, 416, 440, 485, 761, 770, 808, 821, 877 |
| FaqI | GGGAC | 1 cut(s) | 129 |
| FatI | CATG | 3 cut(s) | 106, 414, 768 |
| FauI | CCCGC | 1 cut(s) | 831 |
| FbaI | TGATCA | 1 cut(s) | 535 |
| Fnu4HI | GCNGC | 2 cut(s) | 330, 435 |
| FokI | GGATG | 2 cut(s) | 483, 751 |
| Fsp4HI | GCNGC | 2 cut(s) | 330, 435 |
| FspBI | CTAG | 1 cut(s) | 530 |
| GluI | GCNGC | 2 cut(s) | 330, 435 |
| GsaI | CCCAGC | 1 cut(s) | 85 |
| GsuI | CTGGAG | 1 cut(s) | 567 |
| HaeIII | GGCC | 1 cut(s) | 633 |
| HgaI | GACGC | 1 cut(s) | 131 |
| Hin1I | GRCGYC | 1 cut(s) | 142 |
| Hin1II | CATG | 3 cut(s) | 110, 418, 772 |
| HincII | GTYRAC | 1 cut(s) | 766 |
| HindII | GTYRAC | 1 cut(s) | 766 |
| HinfI | GANTC | 5 cut(s) | 252, 610, 618, 673, 775 |
| HphI | GGTGA | 1 cut(s) | 682 |
| Hpy166II | GTNNAC | 2 cut(s) | 384, 766 |
| Hpy188I | TCNGA | 4 cut(s) | 177, 197, 246, 251 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 584 |
| Hpy8I | GTNNAC | 2 cut(s) | 384, 766 |
| HpyAV | CCTTC | 3 cut(s) | 109, 162, 712 |
| HpyCH4III | ACNGT | 4 cut(s) | 512, 812, 827, 833 |
| HpyCH4V | TGCA | 4 cut(s) | 414, 434, 624, 699 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 139, 148, 329, 630 |
| HpyF3I | CTNAG | 3 cut(s) | 174, 324, 449 |
| Hsp92I | GRCGYC | 1 cut(s) | 142 |
| Hsp92II | CATG | 3 cut(s) | 110, 418, 772 |
| Ksp22I | TGATCA | 1 cut(s) | 535 |
| Kzo9I | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| LmnI | GCTCC | 2 cut(s) | 190, 586 |
| LpnPI | CCDG | 7 cut(s) | 95, 100, 161, 488, 492, 597, 647 |
| Lsp1109I | GCAGC | 2 cut(s) | 341, 446 |
| LweI | GCATC | 3 cut(s) | 461, 686, 709 |
| MaeI | CTAG | 1 cut(s) | 530 |
| MaeIII | GTNAC | 3 cut(s) | 592, 802, 827 |
| MalI | GATC | 5 cut(s) | 179, 248, 537, 566, 872 |
| MboI | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| MboII | GAAGA | 4 cut(s) | 147, 466, 473, 544 |
| MfeI | CAATTG | 1 cut(s) | 289 |
| MflI | RGATCY | 1 cut(s) | 177 |
| MlsI | TGGCCA | 1 cut(s) | 633 |
| MluCI | AATT | 3 cut(s) | 289, 443, 786 |
| MluNI | TGGCCA | 1 cut(s) | 633 |
| MlyI | GAGTC | 2 cut(s) | 627, 682 |
| MnlI | CCTC | 9 cut(s) | 64, 319, 353, 461, 560, 566, 727, 776, 846 |
| Mox20I | TGGCCA | 1 cut(s) | 633 |
| MroXI | GAANNNNTTC | 4 cut(s) | 119, 132, 256, 551 |
| MscI | TGGCCA | 1 cut(s) | 633 |
| MseI | TTAA | 1 cut(s) | 495 |
| MslI | CAYNNNNRTG | 1 cut(s) | 560 |
| Msp20I | TGGCCA | 1 cut(s) | 633 |
| MunI | CAATTG | 1 cut(s) | 289 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 139, 148, 329, 630 |
| NdeII | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| NlaIII | CATG | 3 cut(s) | 110, 418, 772 |
| NlaIV | GGNNCC | 1 cut(s) | 186 |
| NspI | RCATGY | 1 cut(s) | 110 |
| PdmI | GAANNNNTTC | 4 cut(s) | 119, 132, 256, 551 |
| PfeI | GAWTC | 3 cut(s) | 252, 610, 775 |
| PkrI | GCNGC | 2 cut(s) | 331, 436 |
| PleI | GAGTC | 2 cut(s) | 626, 681 |
| PpsI | GAGTC | 2 cut(s) | 626, 681 |
| PspFI | CCCAGC | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 1 cut(s) | 186 |
| PsuI | RGATCY | 1 cut(s) | 177 |
| RsaI | GTAC | 1 cut(s) | 17 |
| RsaNI | GTAC | 1 cut(s) | 16 |
| RseI | CAYNNNNRTG | 1 cut(s) | 560 |
| SaqAI | TTAA | 1 cut(s) | 495 |
| SatI | GCNGC | 2 cut(s) | 330, 435 |
| Sau3AI | GATC | 5 cut(s) | 177, 246, 535, 564, 870 |
| ScaI | AGTACT | 1 cut(s) | 17 |
| SchI | GAGTC | 2 cut(s) | 627, 682 |
| SetI | ASST | 9 cut(s) | 120, 364, 439, 494, 552, 577, 649, 704, 796 |
| SfaNI | GCATC | 3 cut(s) | 461, 686, 709 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 560 |
| SpeI | ACTAGT | 1 cut(s) | 529 |
| Sse9I | AATT | 3 cut(s) | 289, 443, 786 |
| SsiI | CCGC | 1 cut(s) | 838 |
| SspI | AATATT | 1 cut(s) | 628 |
| SspMI | CTAG | 1 cut(s) | 530 |
| TaaI | ACNGT | 4 cut(s) | 512, 812, 827, 833 |
| TaqI | TCGA | 3 cut(s) | 123, 507, 717 |
| TasI | AATT | 3 cut(s) | 289, 443, 786 |
| TatI | WGTACW | 1 cut(s) | 15 |
| TfiI | GAWTC | 3 cut(s) | 252, 610, 775 |
| Tru1I | TTAA | 1 cut(s) | 495 |
| Tru9I | TTAA | 1 cut(s) | 495 |
| TscAI | CASTG | 2 cut(s) | 436, 641 |
| TseI | GCWGC | 2 cut(s) | 329, 434 |
| TspDTI | ATGAA | 3 cut(s) | 32, 141, 678 |
| TspRI | CASTG | 2 cut(s) | 436, 641 |
| XceI | RCATGY | 1 cut(s) | 110 |
| XmnI | GAANNNNTTC | 4 cut(s) | 119, 132, 256, 551 |
| XspI | CTAG | 1 cut(s) | 530 |
| ZrmI | AGTACT | 1 cut(s) | 17 |