Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 31 | 9.3e-09 | PPR repeat family |
| PPR_3 | PF13812 | 7 - 63 | 6.6e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 14 - 47 | 1.6e-08 | PPR repeat |
| TPR_24 | PF23276 | 14 - 115 | 2e-07 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 18 - 67 | 1.1e-17 | PPR repeat family |
| PPR_1 | PF12854 | 50 - 82 | 3.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 57 - 102 | 2.2e-15 | PPR repeat family |
| PPR | PF01535 | 57 - 85 | 1.8e-06 | PPR repeat |
| PPR_1 | PF12854 | 86 - 114 | 6.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 89 - 137 | 6.4e-20 | PPR repeat family |
| PPR | PF01535 | 91 - 120 | 3.1e-06 | PPR repeat |
| PPR_3 | PF13812 | 112 - 170 | 1.4e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 119 - 152 | 1.3e-10 | PPR repeat |
| PPR | PF01535 | 127 - 156 | 2.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 143 - 171 | 5.9e-07 | PPR repeat family |
| PPR_2 | PF13041 | 161 - 203 | 1.1e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 69 |
| AarI | CACCTGC | 1 cut(s) | 622 |
| Acc36I | ACCTGC | 1 cut(s) | 622 |
| AclWI | GGATC | 1 cut(s) | 339 |
| AcoI | YGGCCR | 1 cut(s) | 148 |
| AfaI | GTAC | 1 cut(s) | 488 |
| AflIII | ACRYGT | 1 cut(s) | 422 |
| AgsI | TTSAA | 4 cut(s) | 167, 227, 293, 551 |
| AjnI | CCWGG | 1 cut(s) | 11 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 451, 483 |
| AluBI | AGCT | 2 cut(s) | 143, 308 |
| AluI | AGCT | 2 cut(s) | 143, 308 |
| Alw26I | GTCTC | 3 cut(s) | 518, 535, 557 |
| AlwI | GGATC | 1 cut(s) | 339 |
| AoxI | GGCC | 2 cut(s) | 148, 190 |
| AseI | ATTAAT | 2 cut(s) | 606, 629 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 33 |
| AsuHPI | GGTGA | 2 cut(s) | 547, 603 |
| BalI | TGGCCA | 1 cut(s) | 150 |
| BauI | CACGAG | 1 cut(s) | 144 |
| BccI | CCATC | 5 cut(s) | 77, 91, 182, 235, 470 |
| BciT130I | CCWGG | 1 cut(s) | 13 |
| BclI | TGATCA | 2 cut(s) | 393, 600 |
| BcoDI | GTCTC | 3 cut(s) | 518, 535, 557 |
| BfaI | CTAG | 1 cut(s) | 26 |
| BfmI | CTRYAG | 1 cut(s) | 576 |
| BfuAI | ACCTGC | 1 cut(s) | 622 |
| Bme1390I | CCNGG | 1 cut(s) | 13 |
| BmiI | GGNNCC | 2 cut(s) | 51, 361 |
| BmrFI | CCNGG | 1 cut(s) | 13 |
| BmsI | GCATC | 3 cut(s) | 6, 571, 593 |
| BpmI | CTGGAG | 1 cut(s) | 456 |
| Bpu10I | CCTNAGC | 1 cut(s) | 443 |
| BsaAI | YACGTR | 1 cut(s) | 486 |
| BsaJI | CCNNGG | 1 cut(s) | 502 |
| Bse1I | ACTGG | 1 cut(s) | 571 |
| BseBI | CCWGG | 1 cut(s) | 13 |
| BseDI | CCNNGG | 1 cut(s) | 502 |
| BseGI | GGATG | 4 cut(s) | 10, 21, 88, 193 |
| BseNI | ACTGG | 1 cut(s) | 571 |
| BshFI | GGCC | 2 cut(s) | 150, 192 |
| BsmAI | GTCTC | 3 cut(s) | 518, 535, 557 |
| BsnI | GGCC | 2 cut(s) | 150, 192 |
| Bsp143I | GATC | 3 cut(s) | 331, 393, 600 |
| BspANI | GGCC | 2 cut(s) | 150, 192 |
| BspLI | GGNNCC | 2 cut(s) | 51, 361 |
| BspMAI | CTGCAG | 1 cut(s) | 580 |
| BspMI | ACCTGC | 1 cut(s) | 622 |
| BspPI | GGATC | 1 cut(s) | 339 |
| BsrI | ACTGG | 1 cut(s) | 571 |
| BssECI | CCNNGG | 1 cut(s) | 502 |
| BssMI | GATC | 3 cut(s) | 331, 393, 600 |
| BssSI | CACGAG | 1 cut(s) | 144 |
| Bst2BI | CACGAG | 1 cut(s) | 144 |
| Bst2UI | CCWGG | 1 cut(s) | 13 |
| Bst4CI | ACNGT | 1 cut(s) | 300 |
| Bst6I | CTCTTC | 1 cut(s) | 231 |
| BstBAI | YACGTR | 1 cut(s) | 486 |
| BstC8I | GCNNGC | 1 cut(s) | 141 |
| BstDEI | CTNAG | 1 cut(s) | 443 |
| BstF5I | GGATG | 4 cut(s) | 10, 21, 88, 193 |
| BstKTI | GATC | 3 cut(s) | 334, 396, 603 |
| BstMAI | GTCTC | 3 cut(s) | 518, 535, 557 |
| BstMBI | GATC | 3 cut(s) | 331, 393, 600 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 623 |
| BstNI | CCWGG | 1 cut(s) | 13 |
| BstNSI | RCATGY | 1 cut(s) | 426 |
| BstSCI | CCNGG | 1 cut(s) | 11 |
| BstSFI | CTRYAG | 1 cut(s) | 576 |
| BstX2I | RGATCY | 1 cut(s) | 331 |
| BstYI | RGATCY | 1 cut(s) | 331 |
| BsuRI | GGCC | 2 cut(s) | 150, 192 |
| BtsCI | GGATG | 4 cut(s) | 10, 21, 88, 193 |
| BtsIMutI | CAGTG | 1 cut(s) | 403 |
| BveI | ACCTGC | 1 cut(s) | 622 |
| Cac8I | GCNNGC | 1 cut(s) | 141 |
| Csp6I | GTAC | 1 cut(s) | 487 |
| CviAII | CATG | 2 cut(s) | 327, 423 |
| CviJI | RGCY | 7 cut(s) | 143, 150, 192, 204, 308, 418, 465 |
| CviKI_1 | RGCY | 7 cut(s) | 143, 150, 192, 204, 308, 418, 465 |
| CviQI | GTAC | 1 cut(s) | 487 |
| DdeI | CTNAG | 1 cut(s) | 443 |
| DpnI | GATC | 3 cut(s) | 333, 395, 602 |
| DpnII | GATC | 3 cut(s) | 331, 393, 600 |
| EaeI | YGGCCR | 1 cut(s) | 148 |
| Eam1104I | CTCTTC | 1 cut(s) | 231 |
| EarI | CTCTTC | 1 cut(s) | 231 |
| EcoRII | CCWGG | 1 cut(s) | 11 |
| EcoT22I | ATGCAT | 1 cut(s) | 586 |
| FaeI | CATG | 2 cut(s) | 330, 426 |
| FatI | CATG | 2 cut(s) | 326, 422 |
| FbaI | TGATCA | 2 cut(s) | 393, 600 |
| FokI | GGATG | 4 cut(s) | 17, 28, 95, 200 |
| FspBI | CTAG | 1 cut(s) | 26 |
| GsuI | CTGGAG | 1 cut(s) | 456 |
| HaeIII | GGCC | 2 cut(s) | 150, 192 |
| Hin1II | CATG | 2 cut(s) | 330, 426 |
| HphI | GGTGA | 2 cut(s) | 547, 603 |
| Hpy188I | TCNGA | 1 cut(s) | 503 |
| Hpy188III | TCNNGA | 7 cut(s) | 26, 53, 158, 376, 473, 551, 642 |
| HpyAV | CCTTC | 1 cut(s) | 287 |
| HpyCH4III | ACNGT | 1 cut(s) | 300 |
| HpyCH4IV | ACGT | 1 cut(s) | 485 |
| HpyCH4V | TGCA | 5 cut(s) | 139, 303, 483, 578, 584 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 623 |
| HpyF3I | CTNAG | 1 cut(s) | 443 |
| HpySE526I | ACGT | 1 cut(s) | 485 |
| Hsp92II | CATG | 2 cut(s) | 330, 426 |
| Ksp22I | TGATCA | 2 cut(s) | 393, 600 |
| Kzo9I | GATC | 3 cut(s) | 331, 393, 600 |
| LpnPI | CCDG | 7 cut(s) | 25, 66, 171, 361, 486, 552, 627 |
| LweI | GCATC | 3 cut(s) | 6, 571, 593 |
| MaeI | CTAG | 1 cut(s) | 26 |
| MaeII | ACGT | 1 cut(s) | 485 |
| MaeIII | GTNAC | 2 cut(s) | 271, 407 |
| MalI | GATC | 3 cut(s) | 333, 395, 602 |
| MboI | GATC | 3 cut(s) | 331, 393, 600 |
| MboII | GAAGA | 3 cut(s) | 114, 248, 262 |
| MflI | RGATCY | 1 cut(s) | 331 |
| MlsI | TGGCCA | 1 cut(s) | 150 |
| MluCI | AATT | 3 cut(s) | 227, 495, 607 |
| MluNI | TGGCCA | 1 cut(s) | 150 |
| MmeI | TCCRAC | 3 cut(s) | 165, 213, 237 |
| MnlI | CCTC | 2 cut(s) | 497, 525 |
| Mox20I | TGGCCA | 1 cut(s) | 150 |
| Mph1103I | ATGCAT | 1 cut(s) | 586 |
| MroXI | GAANNNNTTC | 1 cut(s) | 33 |
| MscI | TGGCCA | 1 cut(s) | 150 |
| MseI | TTAA | 2 cut(s) | 606, 629 |
| MslI | CAYNNNNRTG | 1 cut(s) | 77 |
| Msp20I | TGGCCA | 1 cut(s) | 150 |
| MspR9I | CCNGG | 1 cut(s) | 13 |
| MvaI | CCWGG | 1 cut(s) | 13 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 623 |
| NdeII | GATC | 3 cut(s) | 331, 393, 600 |
| NlaIII | CATG | 2 cut(s) | 330, 426 |
| NlaIV | GGNNCC | 2 cut(s) | 51, 361 |
| NsiI | ATGCAT | 1 cut(s) | 586 |
| NspI | RCATGY | 1 cut(s) | 426 |
| PaqCI | CACCTGC | 1 cut(s) | 622 |
| PciI | ACATGT | 1 cut(s) | 422 |
| PdmI | GAANNNNTTC | 1 cut(s) | 33 |
| Ppu21I | YACGTR | 1 cut(s) | 486 |
| PscI | ACATGT | 1 cut(s) | 422 |
| PshBI | ATTAAT | 2 cut(s) | 606, 629 |
| PsiI | TTATAA | 1 cut(s) | 69 |
| Psp6I | CCWGG | 1 cut(s) | 11 |
| PspGI | CCWGG | 1 cut(s) | 11 |
| PspN4I | GGNNCC | 2 cut(s) | 51, 361 |
| PstI | CTGCAG | 1 cut(s) | 580 |
| PsuI | RGATCY | 1 cut(s) | 331 |
| RsaI | GTAC | 1 cut(s) | 488 |
| RsaNI | GTAC | 1 cut(s) | 487 |
| RseI | CAYNNNNRTG | 1 cut(s) | 77 |
| SaqAI | TTAA | 2 cut(s) | 606, 629 |
| Sau3AI | GATC | 3 cut(s) | 331, 393, 600 |
| ScrFI | CCNGG | 1 cut(s) | 13 |
| SetI | ASST | 6 cut(s) | 145, 173, 310, 370, 488, 616 |
| SfaNI | GCATC | 3 cut(s) | 6, 571, 593 |
| SfcI | CTRYAG | 1 cut(s) | 576 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 227, 495, 607 |
| SspI | AATATT | 2 cut(s) | 178, 283 |
| SspMI | CTAG | 1 cut(s) | 26 |
| StyD4I | CCNGG | 1 cut(s) | 11 |
| TaaI | ACNGT | 1 cut(s) | 300 |
| TaiI | ACGT | 1 cut(s) | 488 |
| TasI | AATT | 3 cut(s) | 227, 495, 607 |
| Tru1I | TTAA | 2 cut(s) | 606, 629 |
| Tru9I | TTAA | 2 cut(s) | 606, 629 |
| TscAI | CASTG | 1 cut(s) | 403 |
| TspDTI | ATGAA | 3 cut(s) | 26, 467, 499 |
| TspRI | CASTG | 1 cut(s) | 403 |
| VspI | ATTAAT | 2 cut(s) | 606, 629 |
| XbaI | TCTAGA | 1 cut(s) | 25 |
| XceI | RCATGY | 1 cut(s) | 426 |
| XmnI | GAANNNNTTC | 1 cut(s) | 33 |
| XspI | CTAG | 1 cut(s) | 26 |
| Zsp2I | ATGCAT | 1 cut(s) | 586 |