Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 104 - 160 | 5.7e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 115 - 163 | 9e-12 | PPR repeat family |
| PPR_1 | PF12854 | 146 - 178 | 1.7e-08 | PPR repeat |
| PPR_long | PF17177 | 167 - 281 | 3e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 174 - 229 | 5.4e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 180 - 213 | 8.6e-13 | PPR repeat |
| TPR_24 | PF23276 | 180 - 281 | 4.2e-09 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 184 - 232 | 1.8e-20 | PPR repeat family |
| PPR | PF01535 | 187 - 217 | 3.5e-08 | PPR repeat |
| PPR_3 | PF13812 | 208 - 268 | 5.9e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 216 - 247 | 1.4e-11 | PPR repeat |
| PPR_2 | PF13041 | 219 - 268 | 8.6e-16 | PPR repeat family |
| PPR | PF01535 | 222 - 251 | 3.2e-06 | PPR repeat |
| PPR_1 | PF12854 | 252 - 282 | 6.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 254 - 302 | 2.2e-17 | PPR repeat family |
| PPR | PF01535 | 257 - 286 | 1.1e-08 | PPR repeat |
| PPR_3 | PF13812 | 280 - 336 | 9.6e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 286 - 318 | 4.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 305 - 338 | 2e-10 | PPR repeat family |
| PPR_1 | PF12854 | 320 - 353 | 2.5e-13 | PPR repeat |
| PPR | PF01535 | 327 - 357 | 4.4e-09 | PPR repeat |
| PPR_2 | PF13041 | 331 - 373 | 5.9e-15 | PPR repeat family |
| PPR_long | PF17177 | 340 - 446 | 1.4e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 347 - 404 | 3.3e-13 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 353 - 456 | 4.5e-10 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 355 - 388 | 6.2e-13 | PPR repeat |
| PPR_2 | PF13041 | 359 - 408 | 1.5e-17 | PPR repeat family |
| PPR | PF01535 | 362 - 392 | 1.8e-08 | PPR repeat |
| PPR_3 | PF13812 | 390 - 439 | 1.2e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 391 - 422 | 1.7e-09 | PPR repeat |
| PPR_2 | PF13041 | 394 - 443 | 3.9e-18 | PPR repeat family |
| PPR | PF01535 | 397 - 426 | 9.5e-07 | PPR repeat |
| PPR_1 | PF12854 | 425 - 452 | 9.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 430 - 478 | 1.3e-14 | PPR repeat family |
| PPR_2 | PF13041 | 468 - 501 | 4.5e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 592 |
| AccBSI | CCGCTC | 1 cut(s) | 1121 |
| AccII | CGCG | 3 cut(s) | 489, 614, 1317 |
| AccIII | TCCGGA | 1 cut(s) | 68 |
| AciI | CCGC | 4 cut(s) | 102, 489, 1121, 1317 |
| AclI | AACGTT | 1 cut(s) | 1200 |
| AclWI | GGATC | 4 cut(s) | 627, 841, 857, 870 |
| AcsI | RAATTY | 2 cut(s) | 830, 1146 |
| AcuI | CTGAAG | 2 cut(s) | 846, 1161 |
| AfaI | GTAC | 3 cut(s) | 352, 911, 1430 |
| AflIII | ACRYGT | 1 cut(s) | 612 |
| AgsI | TTSAA | 5 cut(s) | 21, 221, 240, 370, 778 |
| AluBI | AGCT | 4 cut(s) | 125, 394, 735, 1129 |
| AluI | AGCT | 4 cut(s) | 125, 394, 735, 1129 |
| Alw26I | GTCTC | 3 cut(s) | 112, 1062, 1373 |
| AlwI | GGATC | 4 cut(s) | 627, 841, 857, 870 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 824 |
| Ama87I | CYCGRG | 1 cut(s) | 115 |
| Aor13HI | TCCGGA | 1 cut(s) | 68 |
| ApoI | RAATTY | 2 cut(s) | 830, 1146 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 14, 46 |
| AseI | ATTAAT | 1 cut(s) | 999 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 374, 814, 1043 |
| AspLEI | GCGC | 1 cut(s) | 1462 |
| AspS9I | GGNCC | 1 cut(s) | 653 |
| AsuHPI | GGTGA | 3 cut(s) | 503, 1261, 1346 |
| AvaI | CYCGRG | 1 cut(s) | 115 |
| AvaII | GGWCC | 1 cut(s) | 653 |
| BamHI | GGATCC | 1 cut(s) | 862 |
| BccI | CCATC | 4 cut(s) | 575, 628, 1153, 1478 |
| BceAI | ACGGC | 1 cut(s) | 1460 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BcoDI | GTCTC | 3 cut(s) | 112, 1062, 1373 |
| BfaI | CTAG | 3 cut(s) | 185, 447, 920 |
| BfmI | CTRYAG | 1 cut(s) | 379 |
| BfuAI | ACCTGC | 1 cut(s) | 592 |
| BglII | AGATCT | 2 cut(s) | 753, 854 |
| Bme18I | GGWCC | 1 cut(s) | 653 |
| BmeT110I | CYCGRG | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 1 cut(s) | 653 |
| BmiI | GGNNCC | 1 cut(s) | 864 |
| BmsI | GCATC | 9 cut(s) | 309, 496, 706, 781, 1186, 1273, 1336, 1377, 1447 |
| Bsa29I | ATCGAT | 1 cut(s) | 11 |
| BsaAI | YACGTR | 2 cut(s) | 1299, 1510 |
| BsaJI | CCNNGG | 1 cut(s) | 1378 |
| BsaWI | WCCGGW | 3 cut(s) | 68, 630, 655 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 697, 727 |
| BseAI | TCCGGA | 1 cut(s) | 68 |
| BseCI | ATCGAT | 1 cut(s) | 11 |
| BseDI | CCNNGG | 1 cut(s) | 1378 |
| BseGI | GGATG | 7 cut(s) | 639, 664, 1041, 1164, 1177, 1288, 1326 |
| BseMII | CTCAG | 2 cut(s) | 404, 1073 |
| BseRI | GAGGAG | 3 cut(s) | 19, 854, 1080 |
| Bsh1236I | CGCG | 3 cut(s) | 489, 614, 1317 |
| BshVI | ATCGAT | 1 cut(s) | 11 |
| BsiHKCI | CYCGRG | 1 cut(s) | 115 |
| BsiSI | CCGG | 3 cut(s) | 69, 631, 656 |
| BsmAI | GTCTC | 3 cut(s) | 112, 1062, 1373 |
| BsmBI | CGTCTC | 1 cut(s) | 112 |
| BsoBI | CYCGRG | 1 cut(s) | 115 |
| Bsp13I | TCCGGA | 1 cut(s) | 68 |
| Bsp1407I | TGTACA | 2 cut(s) | 909, 1428 |
| BspACI | CCGC | 4 cut(s) | 102, 489, 1121, 1317 |
| BspCNI | CTCAG | 2 cut(s) | 403, 1072 |
| BspDI | ATCGAT | 1 cut(s) | 11 |
| BspEI | TCCGGA | 1 cut(s) | 68 |
| BspFNI | CGCG | 3 cut(s) | 489, 614, 1317 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 1 cut(s) | 864 |
| BspMI | ACCTGC | 1 cut(s) | 592 |
| BspPI | GGATC | 4 cut(s) | 627, 841, 857, 870 |
| BsrBI | CCGCTC | 1 cut(s) | 1121 |
| BsrGI | TGTACA | 2 cut(s) | 909, 1428 |
| BssECI | CCNNGG | 1 cut(s) | 1378 |
| BssT1I | CCWWGG | 1 cut(s) | 1378 |
| Bst4CI | ACNGT | 3 cut(s) | 479, 914, 1084 |
| Bst6I | CTCTTC | 3 cut(s) | 209, 237, 1049 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 963 |
| BstAUI | TGTACA | 2 cut(s) | 909, 1428 |
| BstBAI | YACGTR | 2 cut(s) | 1299, 1510 |
| BstC8I | GCNNGC | 1 cut(s) | 599 |
| BstDEI | CTNAG | 4 cut(s) | 263, 390, 1017, 1059 |
| BstEII | GGTNACC | 1 cut(s) | 664 |
| BstF5I | GGATG | 7 cut(s) | 639, 664, 1041, 1164, 1177, 1288, 1326 |
| BstFNI | CGCG | 3 cut(s) | 489, 614, 1317 |
| BstHHI | GCGC | 1 cut(s) | 1462 |
| BstMAI | GTCTC | 3 cut(s) | 112, 1062, 1373 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 963 |
| BstPI | GGTNACC | 1 cut(s) | 664 |
| BstSFI | CTRYAG | 1 cut(s) | 379 |
| BstSNI | TACGTA | 2 cut(s) | 1299, 1510 |
| BstUI | CGCG | 3 cut(s) | 489, 614, 1317 |
| BstX2I | RGATCY | 4 cut(s) | 619, 753, 854, 862 |
| BstYI | RGATCY | 4 cut(s) | 619, 753, 854, 862 |
| Bsu15I | ATCGAT | 1 cut(s) | 11 |
| BsuTUI | ATCGAT | 1 cut(s) | 11 |
| BtsCI | GGATG | 7 cut(s) | 639, 664, 1041, 1164, 1177, 1288, 1326 |
| BtsI | GCAGTG | 1 cut(s) | 145 |
| BtsIMutI | CAGTG | 1 cut(s) | 145 |
| BveI | ACCTGC | 1 cut(s) | 592 |
| Cac8I | GCNNGC | 1 cut(s) | 599 |
| CaiI | CAGNNNCTG | 1 cut(s) | 824 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 1 cut(s) | 1462 |
| Cfr13I | GGNCC | 1 cut(s) | 653 |
| ClaI | ATCGAT | 1 cut(s) | 11 |
| Csp6I | GTAC | 3 cut(s) | 351, 910, 1429 |
| CviAII | CATG | 4 cut(s) | 214, 440, 1031, 1211 |
| CviQI | GTAC | 3 cut(s) | 351, 910, 1429 |
| DdeI | CTNAG | 4 cut(s) | 263, 390, 1017, 1059 |
| DraI | TTTAAA | 1 cut(s) | 627 |
| Eam1104I | CTCTTC | 3 cut(s) | 209, 237, 1049 |
| EarI | CTCTTC | 3 cut(s) | 209, 237, 1049 |
| Eco105I | TACGTA | 2 cut(s) | 1299, 1510 |
| Eco130I | CCWWGG | 1 cut(s) | 1378 |
| Eco32I | GATATC | 1 cut(s) | 1291 |
| Eco47I | GGWCC | 1 cut(s) | 653 |
| Eco57I | CTGAAG | 2 cut(s) | 846, 1161 |
| Eco88I | CYCGRG | 1 cut(s) | 115 |
| Eco91I | GGTNACC | 1 cut(s) | 664 |
| EcoO65I | GGTNACC | 1 cut(s) | 664 |
| EcoRV | GATATC | 1 cut(s) | 1291 |
| EcoT14I | CCWWGG | 1 cut(s) | 1378 |
| ErhI | CCWWGG | 1 cut(s) | 1378 |
| Esp3I | CGTCTC | 1 cut(s) | 112 |
| FaeI | CATG | 4 cut(s) | 217, 443, 1034, 1214 |
| FatI | CATG | 4 cut(s) | 213, 439, 1030, 1210 |
| FauI | CCCGC | 2 cut(s) | 1114, 1310 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| FokI | GGATG | 7 cut(s) | 646, 671, 1048, 1164, 1171, 1295, 1333 |
| FspBI | CTAG | 3 cut(s) | 185, 447, 920 |
| GlaI | GCGC | 1 cut(s) | 1461 |
| HapII | CCGG | 3 cut(s) | 69, 631, 656 |
| HhaI | GCGC | 1 cut(s) | 1462 |
| Hin1II | CATG | 4 cut(s) | 217, 443, 1034, 1214 |
| Hin6I | GCGC | 1 cut(s) | 1460 |
| HinP1I | GCGC | 1 cut(s) | 1460 |
| HindIII | AAGCTT | 1 cut(s) | 1127 |
| HinfI | GANTC | 4 cut(s) | 46, 169, 191, 334 |
| HpaII | CCGG | 3 cut(s) | 69, 631, 656 |
| HphI | GGTGA | 3 cut(s) | 503, 1261, 1346 |
| Hpy166II | GTNNAC | 2 cut(s) | 502, 887 |
| Hpy188I | TCNGA | 5 cut(s) | 45, 820, 851, 1062, 1154 |
| Hpy188III | TCNNGA | 9 cut(s) | 69, 115, 117, 149, 197, 440, 687, 866, 971 |
| Hpy8I | GTNNAC | 2 cut(s) | 502, 887 |
| Hpy99I | CGWCG | 3 cut(s) | 85, 88, 91 |
| HpyAV | CCTTC | 4 cut(s) | 246, 800, 804, 1015 |
| HpyCH4III | ACNGT | 3 cut(s) | 479, 914, 1084 |
| HpyCH4IV | ACGT | 4 cut(s) | 458, 1200, 1298, 1509 |
| HpyCH4V | TGCA | 7 cut(s) | 322, 357, 591, 1011, 1177, 1267, 1343 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 963 |
| HpyF3I | CTNAG | 4 cut(s) | 263, 390, 1017, 1059 |
| HpySE526I | ACGT | 4 cut(s) | 458, 1200, 1298, 1509 |
| Hsp92II | CATG | 4 cut(s) | 217, 443, 1034, 1214 |
| HspAI | GCGC | 1 cut(s) | 1460 |
| Kpn2I | TCCGGA | 1 cut(s) | 68 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| LweI | GCATC | 9 cut(s) | 309, 496, 706, 781, 1186, 1273, 1336, 1377, 1447 |
| MaeI | CTAG | 3 cut(s) | 185, 447, 920 |
| MaeII | ACGT | 4 cut(s) | 458, 1200, 1298, 1509 |
| MaeIII | GTNAC | 8 cut(s) | 454, 664, 874, 979, 1084, 1206, 1294, 1505 |
| MbiI | CCGCTC | 1 cut(s) | 1121 |
| MfeI | CAATTG | 1 cut(s) | 240 |
| MflI | RGATCY | 4 cut(s) | 619, 753, 854, 862 |
| MluCI | AATT | 7 cut(s) | 64, 240, 370, 673, 830, 1095, 1146 |
| MluI | ACGCGT | 1 cut(s) | 612 |
| MmeI | TCCRAC | 1 cut(s) | 597 |
| MnlI | CCTC | 8 cut(s) | 240, 699, 741, 814, 832, 925, 1058, 1330 |
| MroI | TCCGGA | 1 cut(s) | 68 |
| MroXI | GAANNNNTTC | 3 cut(s) | 374, 814, 1043 |
| MseI | TTAA | 5 cut(s) | 429, 474, 626, 999, 1131 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1412 |
| MspI | CCGG | 3 cut(s) | 69, 631, 656 |
| MunI | CAATTG | 1 cut(s) | 240 |
| MvnI | CGCG | 3 cut(s) | 489, 614, 1317 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 963 |
| NlaIII | CATG | 4 cut(s) | 217, 443, 1034, 1214 |
| NlaIV | GGNNCC | 1 cut(s) | 864 |
| NmuCI | GTSAC | 2 cut(s) | 454, 1084 |
| PaeR7I | CTCGAG | 1 cut(s) | 115 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 464 |
| PdmI | GAANNNNTTC | 3 cut(s) | 374, 814, 1043 |
| PfeI | GAWTC | 4 cut(s) | 46, 169, 191, 334 |
| Ppu21I | YACGTR | 2 cut(s) | 1299, 1510 |
| PshBI | ATTAAT | 1 cut(s) | 999 |
| Psp1406I | AACGTT | 1 cut(s) | 1200 |
| PspEI | GGTNACC | 1 cut(s) | 664 |
| PspN4I | GGNNCC | 1 cut(s) | 864 |
| PspPI | GGNCC | 1 cut(s) | 653 |
| PstNI | CAGNNNCTG | 1 cut(s) | 824 |
| PsuI | RGATCY | 4 cut(s) | 619, 753, 854, 862 |
| RsaI | GTAC | 3 cut(s) | 352, 911, 1430 |
| RsaNI | GTAC | 3 cut(s) | 351, 910, 1429 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1412 |
| SaqAI | TTAA | 5 cut(s) | 429, 474, 626, 999, 1131 |
| Sau96I | GGNCC | 1 cut(s) | 653 |
| SfaNI | GCATC | 9 cut(s) | 309, 496, 706, 781, 1186, 1273, 1336, 1377, 1447 |
| SfcI | CTRYAG | 1 cut(s) | 379 |
| Sfr274I | CTCGAG | 1 cut(s) | 115 |
| SinI | GGWCC | 1 cut(s) | 653 |
| SlaI | CTCGAG | 1 cut(s) | 115 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1412 |
| SmlI | CTYRAG | 1 cut(s) | 115 |
| SmoI | CTYRAG | 1 cut(s) | 115 |
| SnaBI | TACGTA | 2 cut(s) | 1299, 1510 |
| Sse9I | AATT | 7 cut(s) | 64, 240, 370, 673, 830, 1095, 1146 |
| SsiI | CCGC | 4 cut(s) | 102, 489, 1121, 1317 |
| SspI | AATATT | 1 cut(s) | 1186 |
| SspMI | CTAG | 3 cut(s) | 185, 447, 920 |
| StyI | CCWWGG | 1 cut(s) | 1378 |
| TaaI | ACNGT | 3 cut(s) | 479, 914, 1084 |
| TaiI | ACGT | 4 cut(s) | 461, 1203, 1301, 1512 |
| TaqI | TCGA | 5 cut(s) | 11, 116, 148, 724, 1117 |
| TasI | AATT | 7 cut(s) | 64, 240, 370, 673, 830, 1095, 1146 |
| TatI | WGTACW | 3 cut(s) | 350, 909, 1428 |
| TfiI | GAWTC | 4 cut(s) | 46, 169, 191, 334 |
| Tru1I | TTAA | 5 cut(s) | 429, 474, 626, 999, 1131 |
| Tru9I | TTAA | 5 cut(s) | 429, 474, 626, 999, 1131 |
| TscAI | CASTG | 1 cut(s) | 145 |
| TseFI | GTSAC | 2 cut(s) | 454, 1084 |
| Tsp45I | GTSAC | 2 cut(s) | 454, 1084 |
| TspDTI | ATGAA | 7 cut(s) | 29, 194, 296, 939, 1052, 1490, 1515 |
| TspGWI | ACGGA | 2 cut(s) | 69, 1171 |
| TspRI | CASTG | 1 cut(s) | 145 |
| VpaK11BI | GGWCC | 1 cut(s) | 653 |
| VspI | ATTAAT | 1 cut(s) | 999 |
| XapI | RAATTY | 2 cut(s) | 830, 1146 |
| XhoI | CTCGAG | 1 cut(s) | 115 |
| XmnI | GAANNNNTTC | 3 cut(s) | 374, 814, 1043 |
| XspI | CTAG | 3 cut(s) | 185, 447, 920 |