Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 17 - 47 | 2e-11 | PPR repeat |
| PPR_2 | PF13041 | 19 - 68 | 7e-15 | PPR repeat family |
| PPR | PF01535 | 22 - 51 | 5.8e-09 | PPR repeat |
| PPR_long | PF17177 | 43 - 201 | 5.7e-12 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 54 - 82 | 2.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 55 - 103 | 9.8e-19 | PPR repeat family |
| PPR | PF01535 | 58 - 87 | 9.3e-08 | PPR repeat |
| PPR_3 | PF13812 | 78 - 136 | 5.3e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 85 - 118 | 6e-16 | PPR repeat |
| TPR_24 | PF23276 | 85 - 186 | 1.9e-11 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 89 - 137 | 8.6e-19 | PPR repeat family |
| PPR | PF01535 | 92 - 121 | 3.3e-10 | PPR repeat |
| PPR_1 | PF12854 | 121 - 153 | 1.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 132 - 171 | 3.4e-09 | PPR repeat family |
| PPR_3 | PF13812 | 148 - 203 | 9.9e-11 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 160 - 206 | 5.4e-12 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 282 |
| AciI | CCGC | 1 cut(s) | 8 |
| AcoI | YGGCCR | 1 cut(s) | 361 |
| AfaI | GTAC | 1 cut(s) | 412 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 254 |
| AgsI | TTSAA | 6 cut(s) | 41, 238, 429, 506, 517, 533 |
| AluBI | AGCT | 1 cut(s) | 521 |
| AluI | AGCT | 1 cut(s) | 521 |
| AoxI | GGCC | 1 cut(s) | 361 |
| AseI | ATTAAT | 1 cut(s) | 189 |
| BalI | TGGCCA | 1 cut(s) | 363 |
| BanII | GRGCYC | 1 cut(s) | 155 |
| BbsI | GAAGAC | 1 cut(s) | 541 |
| BccI | CCATC | 1 cut(s) | 290 |
| BfaI | CTAG | 1 cut(s) | 555 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmsI | GCATC | 2 cut(s) | 339, 391 |
| BoxI | GACNNNNGTC | 1 cut(s) | 545 |
| BpiI | GAAGAC | 1 cut(s) | 541 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 536, 568 |
| Bsa29I | ATCGAT | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 1 cut(s) | 156 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 254 |
| BseCI | ATCGAT | 1 cut(s) | 216 |
| BseDI | CCNNGG | 1 cut(s) | 156 |
| BseGI | GGATG | 1 cut(s) | 367 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BseMII | CTCAG | 1 cut(s) | 336 |
| BseRI | GAGGAG | 1 cut(s) | 117 |
| BseYI | CCCAGC | 1 cut(s) | 521 |
| BshFI | GGCC | 1 cut(s) | 363 |
| BshVI | ATCGAT | 1 cut(s) | 216 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BsnI | GGCC | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 1 cut(s) | 155 |
| Bsp143I | GATC | 2 cut(s) | 133, 213 |
| Bsp19I | CCATGG | 1 cut(s) | 156 |
| BspACI | CCGC | 1 cut(s) | 8 |
| BspANI | GGCC | 1 cut(s) | 363 |
| BspCNI | CTCAG | 1 cut(s) | 337 |
| BspDI | ATCGAT | 1 cut(s) | 216 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BssECI | CCNNGG | 1 cut(s) | 156 |
| BssMI | GATC | 2 cut(s) | 133, 213 |
| BssT1I | CCWWGG | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 2 cut(s) | 89, 95 |
| BstC8I | GCNNGC | 1 cut(s) | 313 |
| BstDEI | CTNAG | 3 cut(s) | 251, 345, 446 |
| BstDSI | CCRYGG | 1 cut(s) | 156 |
| BstF5I | GGATG | 1 cut(s) | 367 |
| BstKTI | GATC | 2 cut(s) | 136, 216 |
| BstMBI | GATC | 2 cut(s) | 133, 213 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 545 |
| BstV2I | GAAGAC | 1 cut(s) | 541 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 22 |
| Bsu15I | ATCGAT | 1 cut(s) | 216 |
| BsuRI | GGCC | 1 cut(s) | 363 |
| BsuTUI | ATCGAT | 1 cut(s) | 216 |
| BtgI | CCRYGG | 1 cut(s) | 156 |
| BtsCI | GGATG | 1 cut(s) | 367 |
| Cac8I | GCNNGC | 1 cut(s) | 313 |
| ClaI | ATCGAT | 1 cut(s) | 216 |
| Csp6I | GTAC | 1 cut(s) | 411 |
| CviAII | CATG | 2 cut(s) | 31, 157 |
| CviJI | RGCY | 7 cut(s) | 14, 55, 153, 224, 363, 521, 580 |
| CviKI_1 | RGCY | 7 cut(s) | 14, 55, 153, 224, 363, 521, 580 |
| CviQI | GTAC | 1 cut(s) | 411 |
| DdeI | CTNAG | 3 cut(s) | 251, 345, 446 |
| DpnI | GATC | 2 cut(s) | 135, 215 |
| DpnII | GATC | 2 cut(s) | 133, 213 |
| EaeI | YGGCCR | 1 cut(s) | 361 |
| Eco130I | CCWWGG | 1 cut(s) | 156 |
| Eco24I | GRGCYC | 1 cut(s) | 155 |
| EcoT14I | CCWWGG | 1 cut(s) | 156 |
| EcoT38I | GRGCYC | 1 cut(s) | 155 |
| ErhI | CCWWGG | 1 cut(s) | 156 |
| FaeI | CATG | 2 cut(s) | 34, 160 |
| FatI | CATG | 2 cut(s) | 30, 156 |
| FokI | GGATG | 1 cut(s) | 354 |
| FriOI | GRGCYC | 1 cut(s) | 155 |
| FspBI | CTAG | 1 cut(s) | 555 |
| GsaI | CCCAGC | 1 cut(s) | 525 |
| HaeIII | GGCC | 1 cut(s) | 363 |
| Hin1II | CATG | 2 cut(s) | 34, 160 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 2 cut(s) | 37, 533 |
| Hpy166II | GTNNAC | 2 cut(s) | 28, 490 |
| Hpy188I | TCNGA | 3 cut(s) | 171, 346, 381 |
| Hpy188III | TCNNGA | 1 cut(s) | 266 |
| Hpy8I | GTNNAC | 2 cut(s) | 28, 490 |
| HpyAV | CCTTC | 3 cut(s) | 142, 451, 500 |
| HpyCH4III | ACNGT | 2 cut(s) | 89, 95 |
| HpyCH4V | TGCA | 2 cut(s) | 201, 352 |
| HpyF3I | CTNAG | 3 cut(s) | 251, 345, 446 |
| Hsp92II | CATG | 2 cut(s) | 34, 160 |
| Kzo9I | GATC | 2 cut(s) | 133, 213 |
| LmnI | GCTCC | 1 cut(s) | 158 |
| LpnPI | CCDG | 4 cut(s) | 69, 279, 431, 507 |
| LweI | GCATC | 2 cut(s) | 339, 391 |
| MaeI | CTAG | 1 cut(s) | 555 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MalI | GATC | 2 cut(s) | 135, 215 |
| MboI | GATC | 2 cut(s) | 133, 213 |
| MboII | GAAGA | 1 cut(s) | 541 |
| MhlI | GDGCHC | 1 cut(s) | 155 |
| MlsI | TGGCCA | 1 cut(s) | 363 |
| MluCI | AATT | 1 cut(s) | 440 |
| MluNI | TGGCCA | 1 cut(s) | 363 |
| MmeI | TCCRAC | 1 cut(s) | 450 |
| MnlI | CCTC | 4 cut(s) | 95, 109, 258, 538 |
| Mox20I | TGGCCA | 1 cut(s) | 363 |
| MscI | TGGCCA | 1 cut(s) | 363 |
| MseI | TTAA | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 372 |
| Msp20I | TGGCCA | 1 cut(s) | 363 |
| NcoI | CCATGG | 1 cut(s) | 156 |
| NdeII | GATC | 2 cut(s) | 133, 213 |
| NlaIII | CATG | 2 cut(s) | 34, 160 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| PfeI | GAWTC | 2 cut(s) | 37, 533 |
| PshAI | GACNNNNGTC | 1 cut(s) | 545 |
| PshBI | ATTAAT | 1 cut(s) | 189 |
| PsiI | TTATAA | 1 cut(s) | 282 |
| PspFI | CCCAGC | 1 cut(s) | 521 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| RsaI | GTAC | 1 cut(s) | 412 |
| RsaNI | GTAC | 1 cut(s) | 411 |
| RseI | CAYNNNNRTG | 1 cut(s) | 372 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| Sau3AI | GATC | 2 cut(s) | 133, 213 |
| SduI | GDGCHC | 1 cut(s) | 155 |
| SetI | ASST | 5 cut(s) | 49, 358, 511, 523, 549 |
| SfaNI | GCATC | 2 cut(s) | 339, 391 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 372 |
| Sse9I | AATT | 1 cut(s) | 440 |
| SsiI | CCGC | 1 cut(s) | 8 |
| SspI | AATATT | 2 cut(s) | 232, 481 |
| SspMI | CTAG | 1 cut(s) | 555 |
| StyI | CCWWGG | 1 cut(s) | 156 |
| TaaI | ACNGT | 2 cut(s) | 89, 95 |
| TaqI | TCGA | 1 cut(s) | 216 |
| TasI | AATT | 1 cut(s) | 440 |
| TfiI | GAWTC | 2 cut(s) | 37, 533 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TspDTI | ATGAA | 1 cut(s) | 470 |
| VspI | ATTAAT | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 555 |