Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 3 - 51 | 1.5e-17 | PPR repeat family |
| PPR | PF01535 | 6 - 33 | 9e-07 | PPR repeat |
| PPR_1 | PF12854 | 8 - 30 | 1.7e-06 | PPR repeat |
| PPR_long | PF17177 | 16 - 124 | 4e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 25 - 82 | 1.3e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 35 - 66 | 5.3e-12 | PPR repeat |
| PPR_2 | PF13041 | 37 - 86 | 2.5e-18 | PPR repeat family |
| PPR | PF01535 | 40 - 69 | 5.6e-08 | PPR repeat |
| TPR_24 | PF23276 | 40 - 132 | 4.7e-07 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 105 - 132 | 1e-07 | PPR repeat |
| PPR_2 | PF13041 | 108 - 156 | 4.3e-16 | PPR repeat family |
| PPR_3 | PF13812 | 135 - 189 | 9.6e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 138 - 170 | 2.1e-11 | PPR repeat |
| PPR | PF01535 | 146 - 175 | 1.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 150 - 190 | 1.7e-10 | PPR repeat family |
| PPR_1 | PF12854 | 173 - 205 | 6.2e-07 | PPR repeat |
| PPR_2 | PF13041 | 177 - 224 | 4.4e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 233 |
| AclWI | GGATC | 1 cut(s) | 683 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AgsI | TTSAA | 7 cut(s) | 82, 167, 224, 350, 422, 485, 608 |
| AjnI | CCWGG | 2 cut(s) | 96, 691 |
| AluBI | AGCT | 4 cut(s) | 103, 211, 298, 365 |
| AluI | AGCT | 4 cut(s) | 103, 211, 298, 365 |
| Alw26I | GTCTC | 1 cut(s) | 575 |
| AlwI | GGATC | 1 cut(s) | 683 |
| AoxI | GGCC | 3 cut(s) | 205, 247, 457 |
| ApeKI | GCWGC | 2 cut(s) | 170, 641 |
| AspS9I | GGNCC | 1 cut(s) | 457 |
| AsuHPI | GGTGA | 1 cut(s) | 247 |
| BalI | TGGCCA | 1 cut(s) | 207 |
| BbvI | GCAGC | 2 cut(s) | 182, 653 |
| BccI | CCATC | 2 cut(s) | 134, 239 |
| BciT130I | CCWGG | 2 cut(s) | 98, 693 |
| BciVI | GTATCC | 1 cut(s) | 32 |
| BcoDI | GTCTC | 1 cut(s) | 575 |
| BfaI | CTAG | 1 cut(s) | 104 |
| BfmI | CTRYAG | 1 cut(s) | 633 |
| BfuI | GTATCC | 1 cut(s) | 32 |
| BglII | AGATCT | 1 cut(s) | 388 |
| BisI | GCNGC | 2 cut(s) | 171, 642 |
| BlsI | GCNGC | 2 cut(s) | 172, 643 |
| Bme1390I | CCNGG | 2 cut(s) | 98, 693 |
| BmgT120I | GGNCC | 1 cut(s) | 457 |
| BmrFI | CCNGG | 2 cut(s) | 98, 693 |
| BmsI | GCATC | 5 cut(s) | 100, 183, 228, 628, 670 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 170, 202 |
| BpmI | CTGGAG | 2 cut(s) | 119, 387 |
| BpuEI | CTTGAG | 1 cut(s) | 638 |
| Bsa29I | ATCGAT | 1 cut(s) | 60 |
| BsaJI | CCNNGG | 1 cut(s) | 559 |
| Bse1I | ACTGG | 1 cut(s) | 318 |
| Bse3DI | GCAATG | 1 cut(s) | 704 |
| BseBI | CCWGG | 2 cut(s) | 98, 693 |
| BseCI | ATCGAT | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 559 |
| BseGI | GGATG | 2 cut(s) | 433, 685 |
| BseMI | GCAATG | 1 cut(s) | 704 |
| BseMII | CTCAG | 3 cut(s) | 180, 334, 491 |
| BseNI | ACTGG | 1 cut(s) | 318 |
| BseXI | GCAGC | 2 cut(s) | 182, 653 |
| BshFI | GGCC | 3 cut(s) | 207, 249, 459 |
| BshVI | ATCGAT | 1 cut(s) | 60 |
| BsmAI | GTCTC | 1 cut(s) | 575 |
| BsnI | GGCC | 3 cut(s) | 207, 249, 459 |
| Bsp143I | GATC | 3 cut(s) | 57, 388, 688 |
| BspACI | CCGC | 1 cut(s) | 233 |
| BspANI | GGCC | 3 cut(s) | 207, 249, 459 |
| BspCNI | CTCAG | 3 cut(s) | 181, 333, 492 |
| BspDI | ATCGAT | 1 cut(s) | 60 |
| BspMAI | CTGCAG | 1 cut(s) | 637 |
| BspPI | GGATC | 1 cut(s) | 683 |
| BsrDI | GCAATG | 1 cut(s) | 704 |
| BsrI | ACTGG | 1 cut(s) | 318 |
| BssECI | CCNNGG | 1 cut(s) | 559 |
| BssMI | GATC | 3 cut(s) | 57, 388, 688 |
| Bst2UI | CCWGG | 2 cut(s) | 98, 693 |
| Bst4CI | ACNGT | 3 cut(s) | 44, 118, 277 |
| Bst6I | CTCTTC | 2 cut(s) | 171, 398 |
| BstC8I | GCNNGC | 1 cut(s) | 209 |
| BstDEI | CTNAG | 4 cut(s) | 189, 290, 320, 500 |
| BstF5I | GGATG | 2 cut(s) | 433, 685 |
| BstKTI | GATC | 3 cut(s) | 60, 391, 691 |
| BstMAI | GTCTC | 1 cut(s) | 575 |
| BstMBI | GATC | 3 cut(s) | 57, 388, 688 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 156, 295, 641 |
| BstNI | CCWGG | 2 cut(s) | 98, 693 |
| BstSCI | CCNGG | 2 cut(s) | 96, 691 |
| BstSFI | CTRYAG | 1 cut(s) | 633 |
| BstV1I | GCAGC | 2 cut(s) | 182, 653 |
| BstX2I | RGATCY | 2 cut(s) | 388, 688 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 313 |
| BstYI | RGATCY | 2 cut(s) | 388, 688 |
| Bsu15I | ATCGAT | 1 cut(s) | 60 |
| BsuI | GTATCC | 1 cut(s) | 32 |
| BsuRI | GGCC | 3 cut(s) | 207, 249, 459 |
| BsuTUI | ATCGAT | 1 cut(s) | 60 |
| BtgZI | GCGATG | 1 cut(s) | 77 |
| BtsCI | GGATG | 2 cut(s) | 433, 685 |
| Cac8I | GCNNGC | 1 cut(s) | 209 |
| Cfr13I | GGNCC | 1 cut(s) | 457 |
| ClaI | ATCGAT | 1 cut(s) | 60 |
| CseI | GACGC | 1 cut(s) | 74 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 118, 153 |
| CviAII | CATG | 1 cut(s) | 470 |
| DdeI | CTNAG | 4 cut(s) | 189, 290, 320, 500 |
| DpnI | GATC | 3 cut(s) | 59, 390, 690 |
| DpnII | GATC | 3 cut(s) | 57, 388, 688 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 2 cut(s) | 171, 398 |
| EarI | CTCTTC | 2 cut(s) | 171, 398 |
| EcoO109I | RGGNCCY | 1 cut(s) | 457 |
| EcoRII | CCWGG | 2 cut(s) | 96, 691 |
| EcoT22I | ATGCAT | 1 cut(s) | 93 |
| FaeI | CATG | 1 cut(s) | 473 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 600, 632 |
| FatI | CATG | 1 cut(s) | 469 |
| Fnu4HI | GCNGC | 2 cut(s) | 171, 642 |
| FokI | GGATG | 2 cut(s) | 440, 692 |
| Fsp4HI | GCNGC | 2 cut(s) | 171, 642 |
| FspBI | CTAG | 1 cut(s) | 104 |
| GluI | GCNGC | 2 cut(s) | 171, 642 |
| GsuI | CTGGAG | 2 cut(s) | 119, 387 |
| HaeIII | GGCC | 3 cut(s) | 207, 249, 459 |
| HgaI | GACGC | 1 cut(s) | 74 |
| Hin1II | CATG | 1 cut(s) | 473 |
| HinfI | GANTC | 3 cut(s) | 451, 600, 716 |
| HphI | GGTGA | 1 cut(s) | 247 |
| Hpy188I | TCNGA | 3 cut(s) | 15, 190, 560 |
| Hpy188III | TCNNGA | 1 cut(s) | 608 |
| HpyAV | CCTTC | 2 cut(s) | 344, 670 |
| HpyCH4III | ACNGT | 3 cut(s) | 44, 118, 277 |
| HpyCH4V | TGCA | 9 cut(s) | 91, 150, 196, 360, 383, 540, 635, 641, 683 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 156, 295, 641 |
| HpyF3I | CTNAG | 4 cut(s) | 189, 290, 320, 500 |
| Hsp92II | CATG | 1 cut(s) | 473 |
| Kzo9I | GATC | 3 cut(s) | 57, 388, 688 |
| LmnI | GCTCC | 1 cut(s) | 100 |
| Lsp1109I | GCAGC | 2 cut(s) | 182, 653 |
| LweI | GCATC | 5 cut(s) | 100, 183, 228, 628, 670 |
| MaeI | CTAG | 1 cut(s) | 104 |
| MaeIII | GTNAC | 1 cut(s) | 118 |
| MalI | GATC | 3 cut(s) | 59, 390, 690 |
| MboI | GATC | 3 cut(s) | 57, 388, 688 |
| MboII | GAAGA | 2 cut(s) | 188, 385 |
| MfeI | CAATTG | 1 cut(s) | 422 |
| MflI | RGATCY | 2 cut(s) | 388, 688 |
| MlsI | TGGCCA | 1 cut(s) | 207 |
| MluCI | AATT | 6 cut(s) | 162, 284, 330, 422, 480, 653 |
| MluNI | TGGCCA | 1 cut(s) | 207 |
| MlyI | GAGTC | 1 cut(s) | 594 |
| MnlI | CCTC | 3 cut(s) | 506, 554, 615 |
| Mox20I | TGGCCA | 1 cut(s) | 207 |
| Mph1103I | ATGCAT | 1 cut(s) | 93 |
| MscI | TGGCCA | 1 cut(s) | 207 |
| MseI | TTAA | 2 cut(s) | 476, 711 |
| MslI | CAYNNNNRTG | 1 cut(s) | 446 |
| Msp20I | TGGCCA | 1 cut(s) | 207 |
| MspR9I | CCNGG | 2 cut(s) | 98, 693 |
| MunI | CAATTG | 1 cut(s) | 422 |
| MvaI | CCWGG | 2 cut(s) | 98, 693 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 156, 295, 641 |
| NdeII | GATC | 3 cut(s) | 57, 388, 688 |
| NlaIII | CATG | 1 cut(s) | 473 |
| NsiI | ATGCAT | 1 cut(s) | 93 |
| PfeI | GAWTC | 2 cut(s) | 451, 716 |
| PkrI | GCNGC | 2 cut(s) | 172, 643 |
| PleI | GAGTC | 1 cut(s) | 594 |
| PpsI | GAGTC | 1 cut(s) | 594 |
| Psp6I | CCWGG | 2 cut(s) | 96, 691 |
| PspGI | CCWGG | 2 cut(s) | 96, 691 |
| PspPI | GGNCC | 1 cut(s) | 457 |
| PstI | CTGCAG | 1 cut(s) | 637 |
| PsuI | RGATCY | 2 cut(s) | 388, 688 |
| RseI | CAYNNNNRTG | 1 cut(s) | 446 |
| SaqAI | TTAA | 2 cut(s) | 476, 711 |
| SatI | GCNGC | 2 cut(s) | 171, 642 |
| Sau3AI | GATC | 3 cut(s) | 57, 388, 688 |
| Sau96I | GGNCC | 1 cut(s) | 457 |
| SchI | GAGTC | 1 cut(s) | 594 |
| ScrFI | CCNGG | 2 cut(s) | 98, 693 |
| SetI | ASST | 7 cut(s) | 105, 213, 300, 355, 367, 545, 565 |
| SfaNI | GCATC | 5 cut(s) | 100, 183, 228, 628, 670 |
| SfcI | CTRYAG | 1 cut(s) | 633 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 446 |
| SmlI | CTYRAG | 1 cut(s) | 617 |
| SmoI | CTYRAG | 1 cut(s) | 617 |
| Sse9I | AATT | 6 cut(s) | 162, 284, 330, 422, 480, 653 |
| SsiI | CCGC | 1 cut(s) | 233 |
| SspI | AATATT | 1 cut(s) | 340 |
| SspMI | CTAG | 1 cut(s) | 104 |
| StyD4I | CCNGG | 2 cut(s) | 96, 691 |
| TaaI | ACNGT | 3 cut(s) | 44, 118, 277 |
| TaqI | TCGA | 2 cut(s) | 60, 674 |
| TasI | AATT | 6 cut(s) | 162, 284, 330, 422, 480, 653 |
| TfiI | GAWTC | 2 cut(s) | 451, 716 |
| Tru1I | TTAA | 2 cut(s) | 476, 711 |
| Tru9I | TTAA | 2 cut(s) | 476, 711 |
| TseI | GCWGC | 2 cut(s) | 170, 641 |
| TspGWI | ACGGA | 1 cut(s) | 51 |
| XspI | CTAG | 1 cut(s) | 104 |
| Zsp2I | ATGCAT | 1 cut(s) | 93 |