RLG00000034096

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000021
Physical Location & Seq
Reverse (-)
36708354 .. 36710185
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034096

Sequence Viewer

Length: 1584 bp
ATGCTGAAGACGATGAGGGCAACTGCTTCTTCTTCTTGTTATTCTTACTGTTGCAGCAGCAAACAACGGAGAAGAAGAGGCATGCCTTTTCTCCTTGACTCTACTACTACTCTTGATGTTTTCCTCAACACTTTTCATTCTGGGTCCTCAAATCCAAAGTCGTCCTCTGCCTTCCATTATCCGTTTCAATCAAATCTTGTGTCAGCTCGTGAAAATGAAGCACTATTCCCGAGTCATATGACCTTCAGCACTCTAATCAATGGATTCGTTATGAAGGGTAGAGTCCTTGAAGCAGCACAGCTTTTCAGTAAAATGGTCGATATAGGTTGTAAACCGGATATTGTTACCTTTGATACTCTAATAAAGGGACTCTGCATCAAAGGCAACAATCGTGCAGCTCTTCAACTGCTTAGGAAGATGGAACTATCTCCGGATTGTAAGCCTGGTGTGTTTTCTTATGGCACCATCATTGATTGTCTTTGTAAGGAAACACTAATTAATGATGCATTCGACCTCTTCTCGGAAATGATCTGTAAGGGTATTCGCCCAAATGACGTTACCTATAACACTCTCATCCACGGAGTTTGCCAATTAGGCCAGTGGAACCAAGCTACGAGGTTGTTGAATGAAATGGCGAGTCAAATTATCTATCCGGATGTGCGGACCTTCAACGTGTTGATAGATGCATTTTGCAAAGAGGGAATGGTTGTGCAAGCAAAAACCATGGTTGAGATGATGATTCAAAGAGATCTTGAACCTACTGTAGTTACATATAACTCGCTTATGGATGGTTACTGTTTGAGAGGAGAAATGAAGGAGGCAAGAGAAGTGTTCAATCTAATGGTTAGCTTGGGATCAATGGTCGATGCTCAGACTTATGGCACGTTGATAAATGGATATTGCAAGCACAAAAATATCAATGAGGCTGTGAGGCTTTTTCAAGAAATGTCTCATAAGGGACTGTTTCCAGGTACTGTCACGTACACCATTCTTATGGGTGGTTTTTGCAAACTGGGGAGAATACAAGATGCAAAGAAGTTGTTCATTAGGATGCAAGCTTCTGGCCTACTTCCAAATGTTGAGACTTACGGTGTTTTGCTGGATGGCTTTTGTAAAAGGCAACAACTTAGTAAGGCAATGGAGTTGCTTAGAGAGATGGAAGGCAAGAAGTTGCATCCAAATATTGTAATTTACAATATTCTTATGGATTATTTTATCAAAGCTGGAAAACTTGAAGCTGCAAGGGATCTATTTTTCGGTTTATCATCAAAAGGACTTCACCCCGATGTCAAGACATATAATGCAATGATTAGTGGATTTTGTAAGGGGGGCTTAATTAGTGAAGCAGAAAATATGCTGAGAGAAATGGAAGAGAAAGGTTGTTCTCCAGATGGTTGTACGTACAACACAATTATCCGAGGGTTTATCCTTAACAATGAGATGTCAAGGGTGATGGCACTTATTCATCAAATGGTGGAGAAGGGTTTCTCAGCAGATGCATCAACAATGAAAATGATAATTGATTTATTGTCTAGAGATATGGTGGATCGAGCTTTATTGCCCCTGATAAAAGGATCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

528

Amino Acids

59.1

Weight (kDa)

8.6

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 75 - 106 6.3e-07 PPR repeat
PPR_2 PF13041 77 - 125 1.4e-13 PPR repeat family
PPR PF01535 81 - 110 1e-05 PPR repeat
PPR_3 PF13812 101 - 159 3.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 109 - 141 6.1e-11 PPR repeat
PPR_2 PF13041 114 - 162 4e-09 PPR repeat family
PPR_1 PF12854 146 - 176 1.4e-09 PPR repeat
PPR_2 PF13041 148 - 197 2.8e-17 PPR repeat family
PPR_long PF17177 166 - 262 7.7e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 172 - 232 5.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 179 - 211 6.8e-12 PPR repeat
PPR_2 PF13041 183 - 232 9.7e-17 PPR repeat family
PPR_1 PF12854 217 - 246 9.8e-09 PPR repeat
PPR_2 PF13041 218 - 266 6.8e-14 PPR repeat family
PPR_1 PF12854 250 - 282 1.9e-11 PPR repeat
PPR_2 PF13041 253 - 302 9.4e-16 PPR repeat family
PPR PF01535 256 - 285 9.1e-09 PPR repeat
PPR_long PF17177 270 - 410 6.7e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 286 - 317 2.1e-10 PPR repeat
PPR_2 PF13041 289 - 337 2.5e-17 PPR repeat family
PPR PF01535 292 - 321 1.5e-08 PPR repeat
PPR_1 PF12854 319 - 351 1.4e-09 PPR repeat
PPR_2 PF13041 323 - 372 5.4e-16 PPR repeat family
PPR PF01535 326 - 356 1e-07 PPR repeat
PPR_3 PF13812 347 - 405 3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 355 - 387 1.3e-09 PPR repeat
PPR_2 PF13041 393 - 442 2.6e-15 PPR repeat family
PPR_3 PF13812 422 - 473 8.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 424 - 457 4.6e-13 PPR repeat
PPR_2 PF13041 428 - 475 1.8e-16 PPR repeat family
PPR PF01535 432 - 461 6.3e-10 PPR repeat
PPR_2 PF13041 463 - 510 1.6e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AccIII TCCGGA 2 cut(s) 430, 652
AciI CCGC 1 cut(s) 661
AclWI GGATC 4 cut(s) 862, 1254, 1554, 1582
AcuI CTGAAG 2 cut(s) 26, 229
AfaI GTAC 4 cut(s) 973, 983, 1399, 1403
AfiI CCNNNNNNNGG 1 cut(s) 520
AflIII ACRYGT 1 cut(s) 672
AjnI CCWGG 2 cut(s) 442, 967
AluBI AGCT 9 cut(s) 206, 301, 398, 611, 849, 1058, 1223, 1238, 1553
AluI AGCT 9 cut(s) 206, 301, 398, 611, 849, 1058, 1223, 1238, 1553
Alw26I GTCTC 2 cut(s) 954, 1076
AlwI GGATC 4 cut(s) 862, 1254, 1554, 1582
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 1 cut(s) 229
Aor13HI TCCGGA 2 cut(s) 430, 652
AoxI GGCC 2 cut(s) 595, 1063
ApeKI GCWGC 5 cut(s) 54, 57, 293, 395, 1238
ArsI GACNNNNNNTTYG 4 cut(s) 143, 175, 185, 217
AseI ATTAAT 1 cut(s) 498
Asp700I GAANNNNTTC 2 cut(s) 1040, 1484
AspS9I GGNCC 2 cut(s) 144, 663
AsuHPI GGTGA 2 cut(s) 1271, 1462
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 2 cut(s) 144, 663
BanI GGYRCC 1 cut(s) 461
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 5 cut(s) 66, 69, 305, 407, 1225
BccI CCATC 7 cut(s) 412, 473, 782, 1097, 1150, 1385, 1447
BciT130I CCWGG 2 cut(s) 444, 969
BcoDI GTCTC 2 cut(s) 954, 1076
BfaI CTAG 1 cut(s) 1533
BfmI CTRYAG 1 cut(s) 762
BglI GCCNNNNNGGC 1 cut(s) 594
BglII AGATCT 1 cut(s) 748
BisI GCNGC 5 cut(s) 55, 58, 294, 396, 1239
BlsI GCNGC 5 cut(s) 56, 59, 295, 397, 1240
Bme1390I CCNGG 2 cut(s) 444, 969
Bme18I GGWCC 2 cut(s) 144, 663
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 144, 663
BmiI GGNNCC 3 cut(s) 145, 463, 605
BmrFI CCNGG 2 cut(s) 444, 969
BmrI ACTGGG 1 cut(s) 1022
BmsI GCATC 9 cut(s) 384, 493, 673, 856, 1018, 1041, 1183, 1486, 1508
BmuI ACTGGG 1 cut(s) 1022
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 1371
Bpu10I CCTNAGC 1 cut(s) 410
BsaAI YACGTR 2 cut(s) 981, 1401
BsaJI CCNNGG 3 cut(s) 577, 723, 1417
BsaWI WCCGGW 3 cut(s) 334, 430, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse1I ACTGG 2 cut(s) 598, 1017
Bse3DI GCAATG 2 cut(s) 1143, 1311
BseAI TCCGGA 2 cut(s) 430, 652
BseBI CCWGG 2 cut(s) 444, 969
BseDI CCNNGG 3 cut(s) 577, 723, 1417
BseGI GGATG 6 cut(s) 573, 661, 793, 1056, 1108, 1174
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMI GCAATG 2 cut(s) 1143, 1311
BseMII CTCAG 3 cut(s) 884, 1349, 1503
BseNI ACTGG 2 cut(s) 598, 1017
BseRI GAGGAG 1 cut(s) 819
BseXI GCAGC 5 cut(s) 66, 69, 305, 407, 1225
BsgI GTGCAG 1 cut(s) 414
BshFI GGCC 2 cut(s) 597, 1065
BshNI GGYRCC 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 3 cut(s) 335, 431, 653
BslFI GGGAC 2 cut(s) 381, 972
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 954, 1076
BsmFI GGGAC 2 cut(s) 381, 972
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 2 cut(s) 597, 1065
BsoBI CYCGRG 1 cut(s) 229
Bsp13I TCCGGA 2 cut(s) 430, 652
Bsp143I GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 1 cut(s) 661
BspANI GGCC 2 cut(s) 597, 1065
BspCNI CTCAG 3 cut(s) 883, 1350, 1502
BspEI TCCGGA 2 cut(s) 430, 652
BspLI GGNNCC 3 cut(s) 145, 463, 605
BspPI GGATC 4 cut(s) 862, 1254, 1554, 1582
BspQI GCTCTTC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 461
BsrDI GCAATG 2 cut(s) 1143, 1311
BsrI ACTGG 2 cut(s) 598, 1017
BssECI CCNNGG 3 cut(s) 577, 723, 1417
BssMI GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 723
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 444, 969
Bst4CI ACNGT 6 cut(s) 50, 763, 797, 963, 976, 1091
Bst6I CTCTTC 4 cut(s) 70, 405, 521, 1365
BstBAI YACGTR 2 cut(s) 981, 1401
BstC8I GCNNGC 4 cut(s) 83, 714, 905, 1056
BstDEI CTNAG 6 cut(s) 410, 870, 1127, 1148, 1358, 1489
BstDSI CCRYGG 2 cut(s) 577, 723
BstF5I GGATG 6 cut(s) 573, 661, 793, 1056, 1108, 1174
BstKTI GATC 6 cut(s) 531, 751, 857, 1249, 1549, 1577
BstMAI GTCTC 2 cut(s) 954, 1076
BstMBI GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
BstMWI GCNNNNNNNGC 2 cut(s) 381, 594
BstNI CCWGG 2 cut(s) 444, 969
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 442, 967
BstSFI CTRYAG 1 cut(s) 762
BstSNI TACGTA 1 cut(s) 1401
BstV1I GCAGC 5 cut(s) 66, 69, 305, 407, 1225
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 748, 1246
BstXI CCANNNNNNTGG 1 cut(s) 994
BstYI RGATCY 2 cut(s) 748, 1246
BsuRI GGCC 2 cut(s) 597, 1065
BtgI CCRYGG 2 cut(s) 577, 723
BtsCI GGATG 6 cut(s) 573, 661, 793, 1056, 1108, 1174
BtsIMutI CAGTG 1 cut(s) 605
Cac8I GCNNGC 4 cut(s) 83, 714, 905, 1056
CaiI CAGNNNCTG 1 cut(s) 974
Cfr13I GGNCC 2 cut(s) 144, 663
Csp6I GTAC 4 cut(s) 972, 982, 1398, 1402
CspCI CAANNNNNGTGG 2 cut(s) 566, 601
CviAII CATG 2 cut(s) 82, 724
CviQI GTAC 4 cut(s) 972, 982, 1398, 1402
DdeI CTNAG 6 cut(s) 410, 870, 1127, 1148, 1358, 1489
DpnI GATC 6 cut(s) 530, 750, 856, 1248, 1548, 1576
DpnII GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
Eam1104I CTCTTC 4 cut(s) 70, 405, 521, 1365
EarI CTCTTC 4 cut(s) 70, 405, 521, 1365
Eco105I TACGTA 1 cut(s) 1401
Eco130I CCWWGG 1 cut(s) 723
Eco47I GGWCC 2 cut(s) 144, 663
Eco57I CTGAAG 2 cut(s) 26, 229
Eco88I CYCGRG 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 442, 967
EcoT14I CCWWGG 1 cut(s) 723
EcoT22I ATGCAT 3 cut(s) 508, 688, 1501
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 2 cut(s) 85, 727
FalI AAGNNNNNCTT 2 cut(s) 1316, 1348
FaqI GGGAC 2 cut(s) 381, 972
FatI CATG 2 cut(s) 81, 723
FauNDI CATATG 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 55, 58, 294, 396, 1239
FokI GGATG 6 cut(s) 560, 668, 800, 1063, 1115, 1161
Fsp4HI GCNGC 5 cut(s) 55, 58, 294, 396, 1239
FspBI CTAG 1 cut(s) 1533
GluI GCNGC 5 cut(s) 55, 58, 294, 396, 1239
GsuI CTGGAG 1 cut(s) 1371
HaeIII GGCC 2 cut(s) 597, 1065
HapII CCGG 3 cut(s) 335, 431, 653
Hin1II CATG 2 cut(s) 85, 727
HindIII AAGCTT 1 cut(s) 1056
HinfI GANTC 7 cut(s) 98, 232, 264, 282, 369, 637, 739
HpaII CCGG 3 cut(s) 335, 431, 653
HphI GGTGA 2 cut(s) 1271, 1462
Hpy166II GTNNAC 2 cut(s) 332, 984
Hpy188I TCNGA 3 cut(s) 523, 873, 1418
Hpy8I GTNNAC 2 cut(s) 332, 984
HpyAV CCTTC 7 cut(s) 181, 253, 268, 676, 808, 1154, 1474
HpyCH4III ACNGT 6 cut(s) 50, 763, 797, 963, 976, 1091
HpyCH4IV ACGT 5 cut(s) 555, 672, 884, 980, 1400
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 594
HpyF3I CTNAG 6 cut(s) 410, 870, 1127, 1148, 1358, 1489
HpySE526I ACGT 5 cut(s) 555, 672, 884, 980, 1400
Hsp92II CATG 2 cut(s) 85, 727
Kpn2I TCCGGA 2 cut(s) 430, 652
Kzo9I GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
LguI GCTCTTC 1 cut(s) 405
Lsp1109I GCAGC 5 cut(s) 66, 69, 305, 407, 1225
LweI GCATC 9 cut(s) 384, 493, 673, 856, 1018, 1041, 1183, 1486, 1508
MaeI CTAG 1 cut(s) 1533
MaeII ACGT 5 cut(s) 555, 672, 884, 980, 1400
MaeIII GTNAC 5 cut(s) 343, 556, 766, 791, 976
MalI GATC 6 cut(s) 530, 750, 856, 1248, 1548, 1576
MboI GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
MboII GAAGA 9 cut(s) 19, 21, 24, 84, 87, 392, 427, 508, 1382
MflI RGATCY 2 cut(s) 748, 1246
MluCI AATT 7 cut(s) 495, 590, 642, 1188, 1335, 1410, 1518
MlyI GAGTC 5 cut(s) 92, 241, 291, 363, 646
Mph1103I ATGCAT 3 cut(s) 508, 688, 1501
MroI TCCGGA 2 cut(s) 430, 652
MroXI GAANNNNTTC 2 cut(s) 1040, 1484
MseI TTAA 3 cut(s) 498, 1334, 1431
MslI CAYNNNNRTG 3 cut(s) 992, 1049, 1284
MspI CCGG 3 cut(s) 335, 431, 653
MspR9I CCNGG 2 cut(s) 444, 969
Mva1269I GAATGC 1 cut(s) 506
MvaI CCWGG 2 cut(s) 444, 969
MwoI GCNNNNNNNGC 2 cut(s) 381, 594
NcoI CCATGG 1 cut(s) 723
NdeI CATATG 1 cut(s) 237
NdeII GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
NlaIII CATG 2 cut(s) 85, 727
NlaIV GGNNCC 3 cut(s) 145, 463, 605
NmuCI GTSAC 1 cut(s) 976
NsiI ATGCAT 3 cut(s) 508, 688, 1501
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 405
PctI GAATGC 1 cut(s) 506
PdmI GAANNNNTTC 2 cut(s) 1040, 1484
PfeI GAWTC 2 cut(s) 264, 739
PkrI GCNGC 5 cut(s) 56, 59, 295, 397, 1240
PleI GAGTC 5 cut(s) 92, 240, 290, 363, 645
PpsI GAGTC 5 cut(s) 92, 240, 290, 363, 645
Ppu21I YACGTR 2 cut(s) 981, 1401
PpuMI RGGWCCY 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 442, 967
PspGI CCWGG 2 cut(s) 442, 967
PspN4I GGNNCC 3 cut(s) 145, 463, 605
PspPI GGNCC 2 cut(s) 144, 663
PspPPI RGGWCCY 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 2 cut(s) 748, 1246
RsaI GTAC 4 cut(s) 973, 983, 1399, 1403
RsaNI GTAC 4 cut(s) 972, 982, 1398, 1402
RseI CAYNNNNRTG 3 cut(s) 992, 1049, 1284
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 3 cut(s) 498, 1334, 1431
SatI GCNGC 5 cut(s) 55, 58, 294, 396, 1239
Sau3AI GATC 6 cut(s) 528, 748, 854, 1246, 1546, 1574
Sau96I GGNCC 2 cut(s) 144, 663
SchI GAGTC 5 cut(s) 92, 241, 291, 363, 646
ScrFI CCNGG 2 cut(s) 444, 969
SfaNI GCATC 9 cut(s) 384, 493, 673, 856, 1018, 1041, 1183, 1486, 1508
SfcI CTRYAG 1 cut(s) 762
SinI GGWCC 2 cut(s) 144, 663
SmiMI CAYNNNNRTG 3 cut(s) 992, 1049, 1284
SnaBI TACGTA 1 cut(s) 1401
SphI GCATGC 1 cut(s) 85
Sse9I AATT 7 cut(s) 495, 590, 642, 1188, 1335, 1410, 1518
SsiI CCGC 1 cut(s) 661
SspI AATATT 2 cut(s) 1183, 1198
SspMI CTAG 1 cut(s) 1533
StyD4I CCNGG 2 cut(s) 442, 967
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 6 cut(s) 50, 763, 797, 963, 976, 1091
TaiI ACGT 5 cut(s) 558, 675, 887, 983, 1403
TaqI TCGA 4 cut(s) 318, 510, 864, 1549
TasI AATT 7 cut(s) 495, 590, 642, 1188, 1335, 1410, 1518
TfiI GAWTC 2 cut(s) 264, 739
Tru1I TTAA 3 cut(s) 498, 1334, 1431
Tru9I TTAA 3 cut(s) 498, 1334, 1431
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 5 cut(s) 54, 57, 293, 395, 1238
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 8 cut(s) 125, 231, 287, 642, 827, 1033, 1454, 1523
TspGWI ACGGA 3 cut(s) 82, 171, 594
TspRI CASTG 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 144, 663
VspI ATTAAT 1 cut(s) 498
XbaI TCTAGA 1 cut(s) 1532
XceI RCATGY 1 cut(s) 85
XmnI GAANNNNTTC 2 cut(s) 1040, 1484
XspI CTAG 1 cut(s) 1533
Zsp2I ATGCAT 3 cut(s) 508, 688, 1501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.