Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PCRF | PF03462 | 45 - 96 | 1.8e-13 | PCRF domain |
| PPR_3 | PF13812 | 212 - 266 | 7.5e-08 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 219 - 268 | 3.9e-11 | PPR repeat family |
| PPR_1 | PF12854 | 253 - 284 | 3.2e-11 | PPR repeat |
| PPR_3 | PF13812 | 254 - 300 | 2.2e-10 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 255 - 304 | 1e-14 | PPR repeat family |
| PPR_1 | PF12854 | 287 - 318 | 5.7e-12 | PPR repeat |
| PPR_2 | PF13041 | 290 - 339 | 4.4e-19 | PPR repeat family |
| PPR_long | PF17177 | 292 - 377 | 2.1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR | PF01535 | 293 - 323 | 2.3e-07 | PPR repeat |
| PPR_3 | PF13812 | 314 - 373 | 6.9e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 321 - 353 | 7.3e-11 | PPR repeat |
| PPR_2 | PF13041 | 325 - 374 | 4.3e-16 | PPR repeat family |
| PPR | PF01535 | 328 - 358 | 9.5e-08 | PPR repeat |
| PPR_1 | PF12854 | 356 - 381 | 5.2e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 791 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 531 |
| Acc36I | ACCTGC | 1 cut(s) | 740 |
| AccB1I | GGYRCC | 1 cut(s) | 32 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 139 |
| AccII | CGCG | 1 cut(s) | 219 |
| AccIII | TCCGGA | 1 cut(s) | 1078 |
| AciI | CCGC | 4 cut(s) | 155, 377, 607, 864 |
| AclI | AACGTT | 1 cut(s) | 393 |
| AclWI | GGATC | 2 cut(s) | 95, 1089 |
| AcsI | RAATTY | 1 cut(s) | 307 |
| AcyI | GRCGYC | 1 cut(s) | 33 |
| AfaI | GTAC | 2 cut(s) | 131, 292 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 139 |
| AflIII | ACRYGT | 1 cut(s) | 265 |
| AgsI | TTSAA | 9 cut(s) | 263, 409, 493, 504, 520, 598, 640, 653, 937 |
| AleI | CACNNNNGTG | 1 cut(s) | 737 |
| AluBI | AGCT | 6 cut(s) | 53, 94, 160, 615, 669, 993 |
| AluI | AGCT | 6 cut(s) | 53, 94, 160, 615, 669, 993 |
| Alw21I | GWGCWC | 1 cut(s) | 162 |
| Alw26I | GTCTC | 1 cut(s) | 539 |
| AlwI | GGATC | 2 cut(s) | 95, 1089 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 139, 379 |
| Aor13HI | TCCGGA | 1 cut(s) | 1078 |
| AoxI | GGCC | 3 cut(s) | 627, 866, 1021 |
| ApeKI | GCWGC | 5 cut(s) | 225, 379, 719, 742, 824 |
| ApoI | RAATTY | 1 cut(s) | 307 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 348, 413, 426 |
| AspLEI | GCGC | 3 cut(s) | 35, 219, 304 |
| AspS9I | GGNCC | 2 cut(s) | 628, 866 |
| AsuC2I | CCSGG | 1 cut(s) | 257 |
| AsuHPI | GGTGA | 3 cut(s) | 245, 664, 724 |
| AxyI | CCTNAGG | 1 cut(s) | 714 |
| BanI | GGYRCC | 1 cut(s) | 32 |
| BanII | GRGCYC | 1 cut(s) | 162 |
| BbsI | GAAGAC | 2 cut(s) | 75, 641 |
| Bbv12I | GWGCWC | 1 cut(s) | 162 |
| BbvI | GCAGC | 5 cut(s) | 237, 366, 706, 729, 811 |
| BccI | CCATC | 4 cut(s) | 193, 523, 841, 1123 |
| BceAI | ACGGC | 2 cut(s) | 20, 703 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 877, 911 |
| BciVI | GTATCC | 2 cut(s) | 176, 907 |
| BcnI | CCSGG | 1 cut(s) | 257 |
| BcoDI | GTCTC | 1 cut(s) | 539 |
| BfaI | CTAG | 1 cut(s) | 1019 |
| BfmI | CTRYAG | 3 cut(s) | 61, 743, 883 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BfuAI | ACCTGC | 1 cut(s) | 740 |
| BfuI | GTATCC | 2 cut(s) | 176, 907 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 410 |
| BisI | GCNGC | 6 cut(s) | 226, 377, 380, 720, 743, 825 |
| BlpI | GCTNAGC | 1 cut(s) | 372 |
| BlsI | GCNGC | 6 cut(s) | 227, 378, 381, 721, 744, 826 |
| Bme1390I | CCNGG | 1 cut(s) | 257 |
| BmgT120I | GGNCC | 2 cut(s) | 628, 866 |
| BmiI | GGNNCC | 1 cut(s) | 34 |
| BmrFI | CCNGG | 1 cut(s) | 257 |
| BmrI | ACTGGG | 2 cut(s) | 117, 625 |
| BmsI | GCATC | 3 cut(s) | 358, 391, 851 |
| BmuI | ACTGGG | 2 cut(s) | 117, 625 |
| BpiI | GAAGAC | 2 cut(s) | 75, 641 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 372 |
| BpuEI | CTTGAG | 1 cut(s) | 368 |
| BpuMI | CCSGG | 1 cut(s) | 257 |
| BsaBI | GATNNNNATC | 1 cut(s) | 203 |
| BsaHI | GRCGYC | 1 cut(s) | 33 |
| BsaI | GGTCTC | 1 cut(s) | 539 |
| BsaJI | CCNNGG | 2 cut(s) | 150, 685 |
| BsaWI | WCCGGW | 1 cut(s) | 1078 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 139 |
| Bse1I | ACTGG | 3 cut(s) | 123, 631, 1024 |
| Bse21I | CCTNAGG | 1 cut(s) | 714 |
| Bse8I | GATNNNNATC | 1 cut(s) | 203 |
| BseAI | TCCGGA | 1 cut(s) | 1078 |
| BseDI | CCNNGG | 2 cut(s) | 150, 685 |
| BseGI | GGATG | 4 cut(s) | 406, 681, 866, 1134 |
| BseJI | GATNNNNATC | 1 cut(s) | 203 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BseMII | CTCAG | 4 cut(s) | 386, 479, 705, 960 |
| BseNI | ACTGG | 3 cut(s) | 123, 631, 1024 |
| BseRI | GAGGAG | 1 cut(s) | 192 |
| BseXI | GCAGC | 5 cut(s) | 237, 366, 706, 729, 811 |
| BsgI | GTGCAG | 1 cut(s) | 705 |
| Bsh1236I | CGCG | 1 cut(s) | 219 |
| BshFI | GGCC | 3 cut(s) | 629, 868, 1023 |
| BshNI | GGYRCC | 1 cut(s) | 32 |
| BsiHKAI | GWGCWC | 1 cut(s) | 162 |
| BsiSI | CCGG | 2 cut(s) | 256, 1079 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BsmAI | GTCTC | 1 cut(s) | 539 |
| BsmI | GAATGC | 1 cut(s) | 932 |
| BsnI | GGCC | 3 cut(s) | 629, 868, 1023 |
| Bso31I | GGTCTC | 1 cut(s) | 539 |
| Bsp1286I | GDGCHC | 1 cut(s) | 162 |
| Bsp13I | TCCGGA | 1 cut(s) | 1078 |
| Bsp143I | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 372 |
| BspACI | CCGC | 4 cut(s) | 155, 377, 607, 864 |
| BspANI | GGCC | 3 cut(s) | 629, 868, 1023 |
| BspCNI | CTCAG | 4 cut(s) | 385, 478, 706, 959 |
| BspEI | TCCGGA | 1 cut(s) | 1078 |
| BspFNI | CGCG | 1 cut(s) | 219 |
| BspHI | TCATGA | 1 cut(s) | 352 |
| BspLI | GGNNCC | 1 cut(s) | 34 |
| BspMAI | CTGCAG | 2 cut(s) | 65, 747 |
| BspMI | ACCTGC | 1 cut(s) | 740 |
| BspPI | GGATC | 2 cut(s) | 95, 1089 |
| BspT107I | GGYRCC | 1 cut(s) | 32 |
| BspTNI | GGTCTC | 1 cut(s) | 539 |
| BsrI | ACTGG | 3 cut(s) | 123, 631, 1024 |
| BssECI | CCNNGG | 2 cut(s) | 150, 685 |
| BssMI | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| BssNI | GRCGYC | 1 cut(s) | 33 |
| Bst4CI | ACNGT | 2 cut(s) | 508, 902 |
| Bst6I | CTCTTC | 1 cut(s) | 947 |
| BstACI | GRCGYC | 1 cut(s) | 33 |
| BstC8I | GCNNGC | 4 cut(s) | 96, 141, 747, 866 |
| BstDEI | CTNAG | 4 cut(s) | 372, 465, 714, 946 |
| BstDSI | CCRYGG | 2 cut(s) | 150, 685 |
| BstF5I | GGATG | 4 cut(s) | 406, 681, 866, 1134 |
| BstFNI | CGCG | 1 cut(s) | 219 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 3 cut(s) | 35, 219, 304 |
| BstKTI | GATC | 4 cut(s) | 103, 207, 316, 1084 |
| BstMAI | GTCTC | 1 cut(s) | 539 |
| BstMBI | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 30, 225, 410, 1020 |
| BstSCI | CCNGG | 1 cut(s) | 255 |
| BstSFI | CTRYAG | 3 cut(s) | 61, 743, 883 |
| BstUI | CGCG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 5 cut(s) | 237, 366, 706, 729, 811 |
| BstV2I | GAAGAC | 2 cut(s) | 75, 641 |
| Bsu36I | CCTNAGG | 1 cut(s) | 714 |
| BsuI | GTATCC | 2 cut(s) | 176, 907 |
| BsuRI | GGCC | 3 cut(s) | 629, 868, 1023 |
| BtgI | CCRYGG | 2 cut(s) | 150, 685 |
| BtsCI | GGATG | 4 cut(s) | 406, 681, 866, 1134 |
| BtsI | GCAGTG | 1 cut(s) | 819 |
| BtsIMutI | CAGTG | 4 cut(s) | 130, 819, 1031, 1102 |
| BveI | ACCTGC | 1 cut(s) | 740 |
| Cac8I | GCNNGC | 4 cut(s) | 96, 141, 747, 866 |
| CaiI | CAGNNNCTG | 2 cut(s) | 139, 379 |
| CciI | TCATGA | 1 cut(s) | 352 |
| CfoI | GCGC | 3 cut(s) | 35, 219, 304 |
| Cfr13I | GGNCC | 2 cut(s) | 628, 866 |
| Csp6I | GTAC | 2 cut(s) | 130, 291 |
| CviAII | CATG | 5 cut(s) | 17, 73, 353, 419, 805 |
| CviQI | GTAC | 2 cut(s) | 130, 291 |
| DdeI | CTNAG | 4 cut(s) | 372, 465, 714, 946 |
| DinI | GGCGCC | 1 cut(s) | 34 |
| DpnI | GATC | 4 cut(s) | 102, 206, 315, 1083 |
| DpnII | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 531 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 531 |
| Eam1104I | CTCTTC | 1 cut(s) | 947 |
| EarI | CTCTTC | 1 cut(s) | 947 |
| EciI | GGCGGA | 1 cut(s) | 170 |
| Ecl136II | GAGCTC | 1 cut(s) | 160 |
| Eco24I | GRGCYC | 1 cut(s) | 162 |
| Eco31I | GGTCTC | 1 cut(s) | 539 |
| Eco53kI | GAGCTC | 1 cut(s) | 160 |
| Eco81I | CCTNAGG | 1 cut(s) | 714 |
| EcoICRI | GAGCTC | 1 cut(s) | 160 |
| EcoT38I | GRGCYC | 1 cut(s) | 162 |
| EgeI | GGCGCC | 1 cut(s) | 34 |
| EheI | GGCGCC | 1 cut(s) | 34 |
| FaeI | CATG | 5 cut(s) | 20, 76, 356, 422, 808 |
| FatI | CATG | 5 cut(s) | 16, 72, 352, 418, 804 |
| FauI | CCCGC | 1 cut(s) | 857 |
| Fnu4HI | GCNGC | 6 cut(s) | 226, 377, 380, 720, 743, 825 |
| FokI | GGATG | 4 cut(s) | 413, 668, 873, 1141 |
| FriOI | GRGCYC | 1 cut(s) | 162 |
| Fsp4HI | GCNGC | 6 cut(s) | 226, 377, 380, 720, 743, 825 |
| FspBI | CTAG | 1 cut(s) | 1019 |
| GlaI | GCGC | 3 cut(s) | 34, 218, 303 |
| GluI | GCNGC | 6 cut(s) | 226, 377, 380, 720, 743, 825 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 3 cut(s) | 629, 868, 1023 |
| HapII | CCGG | 2 cut(s) | 256, 1079 |
| HhaI | GCGC | 3 cut(s) | 35, 219, 304 |
| Hin1I | GRCGYC | 1 cut(s) | 33 |
| Hin1II | CATG | 5 cut(s) | 20, 76, 356, 422, 808 |
| Hin6I | GCGC | 3 cut(s) | 33, 217, 302 |
| HinP1I | GCGC | 3 cut(s) | 33, 217, 302 |
| HincII | GTYRAC | 1 cut(s) | 479 |
| HindII | GTYRAC | 1 cut(s) | 479 |
| HindIII | AAGCTT | 1 cut(s) | 667 |
| HinfI | GANTC | 6 cut(s) | 57, 118, 242, 296, 598, 1008 |
| HpaII | CCGG | 2 cut(s) | 256, 1079 |
| HphI | GGTGA | 3 cut(s) | 245, 664, 724 |
| Hpy166II | GTNNAC | 2 cut(s) | 253, 479 |
| Hpy188I | TCNGA | 5 cut(s) | 313, 468, 542, 843, 949 |
| Hpy188III | TCNNGA | 5 cut(s) | 104, 353, 385, 551, 1079 |
| Hpy8I | GTNNAC | 2 cut(s) | 253, 479 |
| Hpy99I | CGWCG | 1 cut(s) | 983 |
| HpyAV | CCTTC | 4 cut(s) | 71, 403, 456, 1118 |
| HpyCH4III | ACNGT | 2 cut(s) | 508, 902 |
| HpyCH4IV | ACGT | 3 cut(s) | 265, 393, 978 |
| HpyCH4V | TGCA | 7 cut(s) | 63, 225, 722, 745, 804, 909, 1014 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 30, 225, 410, 1020 |
| HpyF3I | CTNAG | 4 cut(s) | 372, 465, 714, 946 |
| HpySE526I | ACGT | 3 cut(s) | 265, 393, 978 |
| Hsp92I | GRCGYC | 1 cut(s) | 33 |
| Hsp92II | CATG | 5 cut(s) | 20, 76, 356, 422, 808 |
| HspAI | GCGC | 3 cut(s) | 33, 217, 302 |
| KasI | GGCGCC | 1 cut(s) | 32 |
| Kpn2I | TCCGGA | 1 cut(s) | 1078 |
| Kzo9I | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| LmnI | GCTCC | 4 cut(s) | 21, 157, 553, 976 |
| Lsp1109I | GCAGC | 5 cut(s) | 237, 366, 706, 729, 811 |
| LweI | GCATC | 3 cut(s) | 358, 391, 851 |
| MaeI | CTAG | 1 cut(s) | 1019 |
| MaeII | ACGT | 3 cut(s) | 265, 393, 978 |
| MaeIII | GTNAC | 4 cut(s) | 661, 772, 834, 982 |
| MalI | GATC | 4 cut(s) | 102, 206, 315, 1083 |
| MboI | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| MboII | GAAGA | 7 cut(s) | 80, 374, 628, 641, 856, 863, 934 |
| MhlI | GDGCHC | 1 cut(s) | 162 |
| Mly113I | GGCGCC | 1 cut(s) | 33 |
| MlyI | GAGTC | 1 cut(s) | 1017 |
| MroI | TCCGGA | 1 cut(s) | 1078 |
| MroXI | GAANNNNTTC | 3 cut(s) | 348, 413, 426 |
| MseI | TTAA | 1 cut(s) | 233 |
| MslI | CAYNNNNRTG | 2 cut(s) | 357, 737 |
| MspA1I | CMGCKG | 1 cut(s) | 379 |
| MspI | CCGG | 2 cut(s) | 256, 1079 |
| MspR9I | CCNGG | 1 cut(s) | 257 |
| Mva1269I | GAATGC | 1 cut(s) | 932 |
| MvnI | CGCG | 1 cut(s) | 219 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 30, 225, 410, 1020 |
| NarI | GGCGCC | 1 cut(s) | 33 |
| NciI | CCSGG | 1 cut(s) | 257 |
| NdeII | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| NlaIII | CATG | 5 cut(s) | 20, 76, 356, 422, 808 |
| NlaIV | GGNNCC | 1 cut(s) | 34 |
| OliI | CACNNNNGTG | 1 cut(s) | 737 |
| PagI | TCATGA | 1 cut(s) | 352 |
| PctI | GAATGC | 1 cut(s) | 932 |
| PdmI | GAANNNNTTC | 3 cut(s) | 348, 413, 426 |
| PfeI | GAWTC | 5 cut(s) | 57, 118, 242, 296, 598 |
| PflFI | GACNNNGTC | 1 cut(s) | 1007 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 139 |
| PkrI | GCNGC | 6 cut(s) | 227, 378, 381, 721, 744, 826 |
| PleI | GAGTC | 1 cut(s) | 1016 |
| PluTI | GGCGCC | 1 cut(s) | 36 |
| PpsI | GAGTC | 1 cut(s) | 1016 |
| PsiI | TTATAA | 1 cut(s) | 791 |
| Psp124BI | GAGCTC | 1 cut(s) | 162 |
| Psp1406I | AACGTT | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 1 cut(s) | 34 |
| PspPI | GGNCC | 2 cut(s) | 628, 866 |
| PstI | CTGCAG | 2 cut(s) | 65, 747 |
| PstNI | CAGNNNCTG | 2 cut(s) | 139, 379 |
| PsyI | GACNNNGTC | 1 cut(s) | 1007 |
| RsaI | GTAC | 2 cut(s) | 131, 292 |
| RsaNI | GTAC | 2 cut(s) | 130, 291 |
| RseI | CAYNNNNRTG | 2 cut(s) | 357, 737 |
| SacI | GAGCTC | 1 cut(s) | 162 |
| SaqAI | TTAA | 1 cut(s) | 233 |
| SatI | GCNGC | 6 cut(s) | 226, 377, 380, 720, 743, 825 |
| Sau3AI | GATC | 4 cut(s) | 100, 204, 313, 1081 |
| Sau96I | GGNCC | 2 cut(s) | 628, 866 |
| SchI | GAGTC | 1 cut(s) | 1017 |
| ScrFI | CCNGG | 1 cut(s) | 257 |
| SduI | GDGCHC | 1 cut(s) | 162 |
| SfaNI | GCATC | 3 cut(s) | 358, 391, 851 |
| SfcI | CTRYAG | 3 cut(s) | 61, 743, 883 |
| SfoI | GGCGCC | 1 cut(s) | 34 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 357, 737 |
| SmlI | CTYRAG | 1 cut(s) | 383 |
| SmoI | CTYRAG | 1 cut(s) | 383 |
| SsiI | CCGC | 4 cut(s) | 155, 377, 607, 864 |
| SspDI | GGCGCC | 1 cut(s) | 32 |
| SspMI | CTAG | 1 cut(s) | 1019 |
| SstI | GAGCTC | 1 cut(s) | 162 |
| StyD4I | CCNGG | 1 cut(s) | 255 |
| TaaI | ACNGT | 2 cut(s) | 508, 902 |
| TaiI | ACGT | 3 cut(s) | 268, 396, 981 |
| TaqI | TCGA | 4 cut(s) | 116, 162, 342, 897 |
| TauI | GCSGC | 1 cut(s) | 379 |
| TfiI | GAWTC | 5 cut(s) | 57, 118, 242, 296, 598 |
| Tru1I | TTAA | 1 cut(s) | 233 |
| Tru9I | TTAA | 1 cut(s) | 233 |
| TscAI | CASTG | 4 cut(s) | 130, 826, 1031, 1102 |
| TseI | GCWGC | 5 cut(s) | 225, 379, 719, 742, 824 |
| TspDTI | ATGAA | 6 cut(s) | 5, 255, 341, 369, 435, 942 |
| TspGWI | ACGGA | 5 cut(s) | 139, 293, 308, 446, 1020 |
| TspRI | CASTG | 4 cut(s) | 130, 826, 1031, 1102 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1007 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 139 |
| XapI | RAATTY | 1 cut(s) | 307 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1045 |
| XmnI | GAANNNNTTC | 3 cut(s) | 348, 413, 426 |
| XspI | CTAG | 1 cut(s) | 1019 |