Pentatricopeptide repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1026, 1185 |
| AbsI | CCTCGAGG | 1 cut(s) | 819 |
| Acc36I | ACCTGC | 1 cut(s) | 908 |
| Acc65I | GGTACC | 1 cut(s) | 450 |
| AccB1I | GGYRCC | 1 cut(s) | 450 |
| AccII | CGCG | 1 cut(s) | 701 |
| AccIII | TCCGGA | 2 cut(s) | 1407, 1734 |
| AciI | CCGC | 4 cut(s) | 102, 1159, 1424, 1438 |
| AclWI | GGATC | 5 cut(s) | 656, 679, 785, 1505, 1798 |
| AcoI | YGGCCR | 1 cut(s) | 1156 |
| AcsI | RAATTY | 3 cut(s) | 89, 845, 967 |
| AcuI | CTGAAG | 3 cut(s) | 273, 284, 984 |
| AcvI | CACGTG | 1 cut(s) | 260 |
| AfaI | GTAC | 3 cut(s) | 452, 744, 919 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 962, 1971 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1099 |
| AjnI | CCWGG | 2 cut(s) | 1261, 1551 |
| Alw26I | GTCTC | 4 cut(s) | 1809, 1929, 1945, 1981 |
| AlwI | GGATC | 5 cut(s) | 656, 679, 785, 1505, 1798 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 484, 653, 1346 |
| Ama87I | CYCGRG | 1 cut(s) | 819 |
| Aor13HI | TCCGGA | 2 cut(s) | 1407, 1734 |
| AoxI | GGCC | 3 cut(s) | 995, 1156, 1504 |
| ApeKI | GCWGC | 4 cut(s) | 767, 947, 1113, 1298 |
| ApoI | RAATTY | 3 cut(s) | 89, 845, 967 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 109, 813, 1730 |
| Asp718I | GGTACC | 1 cut(s) | 450 |
| AspLEI | GCGC | 1 cut(s) | 701 |
| AspS9I | GGNCC | 5 cut(s) | 897, 1220, 1259, 1504, 1702 |
| AsuHPI | GGTGA | 2 cut(s) | 515, 1931 |
| AvaI | CYCGRG | 1 cut(s) | 819 |
| AvaII | GGWCC | 4 cut(s) | 897, 1220, 1259, 1702 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1374, 1407 |
| BanI | GGYRCC | 1 cut(s) | 450 |
| BbrPI | CACGTG | 1 cut(s) | 260 |
| BbsI | GAAGAC | 3 cut(s) | 1098, 1257, 1686 |
| BbvI | GCAGC | 4 cut(s) | 754, 934, 1125, 1285 |
| BccI | CCATC | 7 cut(s) | 317, 347, 662, 746, 953, 1133, 1820 |
| BceAI | ACGGC | 1 cut(s) | 1126 |
| BciT130I | CCWGG | 2 cut(s) | 1263, 1553 |
| BciVI | GTATCC | 1 cut(s) | 796 |
| BcoDI | GTCTC | 4 cut(s) | 1809, 1929, 1945, 1981 |
| BfaI | CTAG | 4 cut(s) | 237, 626, 872, 1976 |
| BfmI | CTRYAG | 2 cut(s) | 554, 1353 |
| BfuAI | ACCTGC | 1 cut(s) | 908 |
| BfuI | GTATCC | 1 cut(s) | 796 |
| BisI | GCNGC | 5 cut(s) | 768, 948, 1114, 1159, 1299 |
| BlsI | GCNGC | 5 cut(s) | 769, 949, 1115, 1160, 1300 |
| BmcAI | AGTACT | 1 cut(s) | 919 |
| Bme1390I | CCNGG | 2 cut(s) | 1263, 1553 |
| Bme18I | GGWCC | 4 cut(s) | 897, 1220, 1259, 1702 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1099 |
| BmeT110I | CYCGRG | 1 cut(s) | 819 |
| BmgT120I | GGNCC | 5 cut(s) | 897, 1220, 1259, 1504, 1702 |
| BmiI | GGNNCC | 5 cut(s) | 328, 452, 898, 1260, 1582 |
| BmrFI | CCNGG | 2 cut(s) | 1263, 1553 |
| BmrI | ACTGGG | 1 cut(s) | 1264 |
| BmsI | GCATC | 9 cut(s) | 253, 481, 592, 1065, 1094, 1285, 1333, 1676, 1753 |
| BmuI | ACTGGG | 1 cut(s) | 1264 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1257 |
| BpiI | GAAGAC | 3 cut(s) | 1098, 1257, 1686 |
| BpmI | CTGGAG | 1 cut(s) | 1250 |
| BpuEI | CTTGAG | 1 cut(s) | 1911 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1026 |
| BsaJI | CCNNGG | 4 cut(s) | 798, 909, 1712, 2016 |
| BsaWI | WCCGGW | 2 cut(s) | 1407, 1734 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1134, 1164 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 962, 1971 |
| Bse1I | ACTGG | 3 cut(s) | 1259, 1944, 2072 |
| Bse3DI | GCAATG | 3 cut(s) | 642, 769, 1426 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1026 |
| BseAI | TCCGGA | 2 cut(s) | 1407, 1734 |
| BseBI | CCWGG | 2 cut(s) | 1263, 1553 |
| BseDI | CCNNGG | 4 cut(s) | 798, 909, 1712, 2016 |
| BseGI | GGATG | 6 cut(s) | 158, 328, 418, 934, 1744, 1831 |
| BseJI | GATNNNNATC | 1 cut(s) | 1026 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 962, 1971 |
| BseMI | GCAATG | 3 cut(s) | 642, 769, 1426 |
| BseMII | CTCAG | 2 cut(s) | 1506, 1781 |
| BseNI | ACTGG | 3 cut(s) | 1259, 1944, 2072 |
| BseRI | GAGGAG | 2 cut(s) | 454, 837 |
| BseXI | GCAGC | 4 cut(s) | 754, 934, 1125, 1285 |
| Bsh1236I | CGCG | 1 cut(s) | 701 |
| BshFI | GGCC | 3 cut(s) | 997, 1158, 1506 |
| BshNI | GGYRCC | 1 cut(s) | 450 |
| BsiHKCI | CYCGRG | 1 cut(s) | 819 |
| BsiSI | CCGG | 2 cut(s) | 1408, 1735 |
| BslFI | GGGAC | 3 cut(s) | 769, 910, 1334 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 962, 1971 |
| BsmAI | GTCTC | 4 cut(s) | 1809, 1929, 1945, 1981 |
| BsmFI | GGGAC | 3 cut(s) | 769, 910, 1334 |
| BsmI | GAATGC | 1 cut(s) | 770 |
| BsnI | GGCC | 3 cut(s) | 997, 1158, 1506 |
| BsoBI | CYCGRG | 1 cut(s) | 819 |
| Bsp13I | TCCGGA | 2 cut(s) | 1407, 1734 |
| Bsp143I | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| Bsp19I | CCATGG | 1 cut(s) | 909 |
| BspACI | CCGC | 4 cut(s) | 102, 1159, 1424, 1438 |
| BspANI | GGCC | 3 cut(s) | 997, 1158, 1506 |
| BspCNI | CTCAG | 2 cut(s) | 1507, 1780 |
| BspEI | TCCGGA | 2 cut(s) | 1407, 1734 |
| BspFNI | CGCG | 1 cut(s) | 701 |
| BspHI | TCATGA | 2 cut(s) | 682, 2047 |
| BspLI | GGNNCC | 5 cut(s) | 328, 452, 898, 1260, 1582 |
| BspMI | ACCTGC | 1 cut(s) | 908 |
| BspPI | GGATC | 5 cut(s) | 656, 679, 785, 1505, 1798 |
| BspT107I | GGYRCC | 1 cut(s) | 450 |
| BsrDI | GCAATG | 3 cut(s) | 642, 769, 1426 |
| BsrI | ACTGG | 3 cut(s) | 1259, 1944, 2072 |
| BssECI | CCNNGG | 4 cut(s) | 798, 909, 1712, 2016 |
| BssMI | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| BssT1I | CCWWGG | 4 cut(s) | 798, 909, 1712, 2016 |
| Bst2UI | CCWGG | 2 cut(s) | 1263, 1553 |
| Bst4CI | ACNGT | 3 cut(s) | 747, 1049, 1699 |
| Bst6I | CTCTTC | 2 cut(s) | 164, 1273 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 263 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 5 cut(s) | 430, 434, 587, 1303, 1893 |
| BstDEI | CTNAG | 2 cut(s) | 1515, 1767 |
| BstDSI | CCRYGG | 1 cut(s) | 909 |
| BstF5I | GGATG | 6 cut(s) | 158, 328, 418, 934, 1744, 1831 |
| BstFNI | CGCG | 1 cut(s) | 701 |
| BstHHI | GCGC | 1 cut(s) | 701 |
| BstKTI | GATC | 7 cut(s) | 664, 674, 793, 829, 1513, 1660, 1793 |
| BstMAI | GTCTC | 4 cut(s) | 1809, 1929, 1945, 1981 |
| BstMBI | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 263, 705, 840 |
| BstNI | CCWGG | 2 cut(s) | 1263, 1553 |
| BstNSI | RCATGY | 1 cut(s) | 762 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1257 |
| BstSCI | CCNGG | 2 cut(s) | 1261, 1551 |
| BstSFI | CTRYAG | 2 cut(s) | 554, 1353 |
| BstUI | CGCG | 1 cut(s) | 701 |
| BstV1I | GCAGC | 4 cut(s) | 754, 934, 1125, 1285 |
| BstV2I | GAAGAC | 3 cut(s) | 1098, 1257, 1686 |
| BstX2I | RGATCY | 2 cut(s) | 671, 1790 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1501 |
| BstYI | RGATCY | 2 cut(s) | 671, 1790 |
| BsuI | GTATCC | 1 cut(s) | 796 |
| BsuRI | GGCC | 3 cut(s) | 997, 1158, 1506 |
| BtgI | CCRYGG | 1 cut(s) | 909 |
| BtsCI | GGATG | 6 cut(s) | 158, 328, 418, 934, 1744, 1831 |
| BtsIMutI | CAGTG | 2 cut(s) | 297, 639 |
| BveI | ACCTGC | 1 cut(s) | 908 |
| Cac8I | GCNNGC | 5 cut(s) | 430, 434, 587, 1303, 1893 |
| CaiI | CAGNNNCTG | 3 cut(s) | 484, 653, 1346 |
| CciI | TCATGA | 2 cut(s) | 682, 2047 |
| CfoI | GCGC | 1 cut(s) | 701 |
| Cfr13I | GGNCC | 5 cut(s) | 897, 1220, 1259, 1504, 1702 |
| Csp6I | GTAC | 3 cut(s) | 451, 743, 918 |
| CviAII | CATG | 8 cut(s) | 116, 683, 759, 910, 1401, 1663, 1797, 2048 |
| CviQI | GTAC | 3 cut(s) | 451, 743, 918 |
| DdeI | CTNAG | 2 cut(s) | 1515, 1767 |
| DpnI | GATC | 7 cut(s) | 663, 673, 792, 828, 1512, 1659, 1792 |
| DpnII | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1099 |
| EaeI | YGGCCR | 1 cut(s) | 1156 |
| Eam1104I | CTCTTC | 2 cut(s) | 164, 1273 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1099 |
| EarI | CTCTTC | 2 cut(s) | 164, 1273 |
| EciI | GGCGGA | 2 cut(s) | 117, 1427 |
| Eco130I | CCWWGG | 4 cut(s) | 798, 909, 1712, 2016 |
| Eco47I | GGWCC | 4 cut(s) | 897, 1220, 1259, 1702 |
| Eco57I | CTGAAG | 3 cut(s) | 273, 284, 984 |
| Eco72I | CACGTG | 1 cut(s) | 260 |
| Eco88I | CYCGRG | 1 cut(s) | 819 |
| EcoO109I | RGGNCCY | 3 cut(s) | 897, 1220, 1259 |
| EcoRII | CCWGG | 2 cut(s) | 1261, 1551 |
| EcoT14I | CCWWGG | 4 cut(s) | 798, 909, 1712, 2016 |
| EcoT22I | ATGCAT | 1 cut(s) | 1087 |
| ErhI | CCWWGG | 4 cut(s) | 798, 909, 1712, 2016 |
| FaeI | CATG | 8 cut(s) | 119, 686, 762, 913, 1404, 1666, 1800, 2051 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1715, 1747 |
| FaqI | GGGAC | 3 cut(s) | 769, 910, 1334 |
| FatI | CATG | 8 cut(s) | 115, 682, 758, 909, 1400, 1662, 1796, 2047 |
| Fnu4HI | GCNGC | 5 cut(s) | 768, 948, 1114, 1159, 1299 |
| FokI | GGATG | 6 cut(s) | 145, 335, 425, 941, 1731, 1838 |
| Fsp4HI | GCNGC | 5 cut(s) | 768, 948, 1114, 1159, 1299 |
| FspBI | CTAG | 4 cut(s) | 237, 626, 872, 1976 |
| GlaI | GCGC | 1 cut(s) | 700 |
| GluI | GCNGC | 5 cut(s) | 768, 948, 1114, 1159, 1299 |
| GsuI | CTGGAG | 1 cut(s) | 1250 |
| HaeIII | GGCC | 3 cut(s) | 997, 1158, 1506 |
| HapII | CCGG | 2 cut(s) | 1408, 1735 |
| HhaI | GCGC | 1 cut(s) | 701 |
| Hin1II | CATG | 8 cut(s) | 119, 686, 762, 913, 1404, 1666, 1800, 2051 |
| Hin6I | GCGC | 1 cut(s) | 699 |
| HinP1I | GCGC | 1 cut(s) | 699 |
| HincII | GTYRAC | 1 cut(s) | 1104 |
| HindII | GTYRAC | 1 cut(s) | 1104 |
| HindIII | AAGCTT | 3 cut(s) | 587, 720, 1862 |
| HpaII | CCGG | 2 cut(s) | 1408, 1735 |
| HphI | GGTGA | 2 cut(s) | 515, 1931 |
| Hpy166II | GTNNAC | 3 cut(s) | 1045, 1104, 1370 |
| Hpy8I | GTNNAC | 3 cut(s) | 1045, 1104, 1370 |
| HpyCH4III | ACNGT | 3 cut(s) | 747, 1049, 1699 |
| HpyCH4IV | ACGT | 1 cut(s) | 259 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 263, 705, 840 |
| HpyF3I | CTNAG | 2 cut(s) | 1515, 1767 |
| HpySE526I | ACGT | 1 cut(s) | 259 |
| Hsp92II | CATG | 8 cut(s) | 119, 686, 762, 913, 1404, 1666, 1800, 2051 |
| HspAI | GCGC | 1 cut(s) | 699 |
| Kpn2I | TCCGGA | 2 cut(s) | 1407, 1734 |
| KpnI | GGTACC | 1 cut(s) | 454 |
| Kzo9I | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| LmnI | GCTCC | 4 cut(s) | 332, 475, 1231, 1440 |
| Lsp1109I | GCAGC | 4 cut(s) | 754, 934, 1125, 1285 |
| LweI | GCATC | 9 cut(s) | 253, 481, 592, 1065, 1094, 1285, 1333, 1676, 1753 |
| MaeI | CTAG | 4 cut(s) | 237, 626, 872, 1976 |
| MaeII | ACGT | 1 cut(s) | 259 |
| MaeIII | GTNAC | 1 cut(s) | 1639 |
| MalI | GATC | 7 cut(s) | 663, 673, 792, 828, 1512, 1659, 1792 |
| MboI | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| MflI | RGATCY | 2 cut(s) | 671, 1790 |
| MluCI | AATT | 9 cut(s) | 89, 227, 366, 459, 470, 845, 967, 1097, 1994 |
| MlyI | GAGTC | 7 cut(s) | 44, 179, 532, 644, 1016, 1309, 1931 |
| MmeI | TCCRAC | 1 cut(s) | 491 |
| Mph1103I | ATGCAT | 1 cut(s) | 1087 |
| MroI | TCCGGA | 2 cut(s) | 1407, 1734 |
| MroXI | GAANNNNTTC | 3 cut(s) | 109, 813, 1730 |
| MseI | TTAA | 9 cut(s) | 93, 120, 458, 462, 537, 977, 1560, 1722, 1757 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1310 |
| MspI | CCGG | 2 cut(s) | 1408, 1735 |
| MspR9I | CCNGG | 2 cut(s) | 1263, 1553 |
| Mva1269I | GAATGC | 1 cut(s) | 770 |
| MvaI | CCWGG | 2 cut(s) | 1263, 1553 |
| MvnI | CGCG | 1 cut(s) | 701 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 263, 705, 840 |
| NcoI | CCATGG | 1 cut(s) | 909 |
| NdeII | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| NlaIII | CATG | 8 cut(s) | 119, 686, 762, 913, 1404, 1666, 1800, 2051 |
| NlaIV | GGNNCC | 5 cut(s) | 328, 452, 898, 1260, 1582 |
| NmeAIII | GCCGAG | 1 cut(s) | 589 |
| NmuCI | GTSAC | 1 cut(s) | 1639 |
| NsiI | ATGCAT | 1 cut(s) | 1087 |
| NspI | RCATGY | 1 cut(s) | 762 |
| PacI | TTAATTAA | 1 cut(s) | 462 |
| PaeR7I | CTCGAG | 1 cut(s) | 819 |
| PagI | TCATGA | 2 cut(s) | 682, 2047 |
| PctI | GAATGC | 1 cut(s) | 770 |
| PdmI | GAANNNNTTC | 3 cut(s) | 109, 813, 1730 |
| PfeI | GAWTC | 6 cut(s) | 568, 594, 1130, 1289, 1411, 1622 |
| PflFI | GACNNNGTC | 1 cut(s) | 653 |
| PkrI | GCNGC | 5 cut(s) | 769, 949, 1115, 1160, 1300 |
| PleI | GAGTC | 7 cut(s) | 43, 179, 531, 644, 1015, 1309, 1930 |
| PmaCI | CACGTG | 1 cut(s) | 260 |
| PmlI | CACGTG | 1 cut(s) | 260 |
| PpsI | GAGTC | 7 cut(s) | 43, 179, 531, 644, 1015, 1309, 1930 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| PpuMI | RGGWCCY | 3 cut(s) | 897, 1220, 1259 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1257 |
| PsiI | TTATAA | 2 cut(s) | 1026, 1185 |
| Psp5II | RGGWCCY | 3 cut(s) | 897, 1220, 1259 |
| Psp6I | CCWGG | 2 cut(s) | 1261, 1551 |
| PspCI | CACGTG | 1 cut(s) | 260 |
| PspGI | CCWGG | 2 cut(s) | 1261, 1551 |
| PspN4I | GGNNCC | 5 cut(s) | 328, 452, 898, 1260, 1582 |
| PspPI | GGNCC | 5 cut(s) | 897, 1220, 1259, 1504, 1702 |
| PspPPI | RGGWCCY | 3 cut(s) | 897, 1220, 1259 |
| PspXI | VCTCGAGB | 1 cut(s) | 819 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1532, 1564 |
| PstNI | CAGNNNCTG | 3 cut(s) | 484, 653, 1346 |
| PsuI | RGATCY | 2 cut(s) | 671, 1790 |
| PsyI | GACNNNGTC | 1 cut(s) | 653 |
| RsaI | GTAC | 3 cut(s) | 452, 744, 919 |
| RsaNI | GTAC | 3 cut(s) | 451, 743, 918 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SaqAI | TTAA | 9 cut(s) | 93, 120, 458, 462, 537, 977, 1560, 1722, 1757 |
| SatI | GCNGC | 5 cut(s) | 768, 948, 1114, 1159, 1299 |
| Sau3AI | GATC | 7 cut(s) | 661, 671, 790, 826, 1510, 1657, 1790 |
| Sau96I | GGNCC | 5 cut(s) | 897, 1220, 1259, 1504, 1702 |
| ScaI | AGTACT | 1 cut(s) | 919 |
| SchI | GAGTC | 7 cut(s) | 44, 179, 532, 644, 1016, 1309, 1931 |
| ScrFI | CCNGG | 2 cut(s) | 1263, 1553 |
| SfaNI | GCATC | 9 cut(s) | 253, 481, 592, 1065, 1094, 1285, 1333, 1676, 1753 |
| SfcI | CTRYAG | 2 cut(s) | 554, 1353 |
| Sfr274I | CTCGAG | 1 cut(s) | 819 |
| SinI | GGWCC | 4 cut(s) | 897, 1220, 1259, 1702 |
| SlaI | CTCGAG | 1 cut(s) | 819 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SmlI | CTYRAG | 2 cut(s) | 819, 1926 |
| SmoI | CTYRAG | 2 cut(s) | 819, 1926 |
| Sse9I | AATT | 9 cut(s) | 89, 227, 366, 459, 470, 845, 967, 1097, 1994 |
| SsiI | CCGC | 4 cut(s) | 102, 1159, 1424, 1438 |
| SspI | AATATT | 2 cut(s) | 814, 1720 |
| SspMI | CTAG | 4 cut(s) | 237, 626, 872, 1976 |
| StyD4I | CCNGG | 2 cut(s) | 1261, 1551 |
| StyI | CCWWGG | 4 cut(s) | 798, 909, 1712, 2016 |
| TaaI | ACNGT | 3 cut(s) | 747, 1049, 1699 |
| TaiI | ACGT | 1 cut(s) | 262 |
| TaqI | TCGA | 2 cut(s) | 526, 820 |
| TasI | AATT | 9 cut(s) | 89, 227, 366, 459, 470, 845, 967, 1097, 1994 |
| TatI | WGTACW | 2 cut(s) | 742, 917 |
| TauI | GCSGC | 1 cut(s) | 1161 |
| TfiI | GAWTC | 6 cut(s) | 568, 594, 1130, 1289, 1411, 1622 |
| Tru1I | TTAA | 9 cut(s) | 93, 120, 458, 462, 537, 977, 1560, 1722, 1757 |
| Tru9I | TTAA | 9 cut(s) | 93, 120, 458, 462, 537, 977, 1560, 1722, 1757 |
| TscAI | CASTG | 2 cut(s) | 297, 639 |
| TseFI | GTSAC | 1 cut(s) | 1639 |
| TseI | GCWGC | 4 cut(s) | 767, 947, 1113, 1298 |
| Tsp45I | GTSAC | 1 cut(s) | 1639 |
| TspGWI | ACGGA | 1 cut(s) | 587 |
| TspRI | CASTG | 2 cut(s) | 297, 639 |
| Tth111I | GACNNNGTC | 1 cut(s) | 653 |
| VpaK11BI | GGWCC | 4 cut(s) | 897, 1220, 1259, 1702 |
| XapI | RAATTY | 3 cut(s) | 89, 845, 967 |
| XceI | RCATGY | 1 cut(s) | 762 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 990 |
| XhoI | CTCGAG | 1 cut(s) | 819 |
| XmnI | GAANNNNTTC | 3 cut(s) | 109, 813, 1730 |
| XspI | CTAG | 4 cut(s) | 237, 626, 872, 1976 |
| ZrmI | AGTACT | 1 cut(s) | 919 |
| Zsp2I | ATGCAT | 1 cut(s) | 1087 |