Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GUB_WAK_bind | PF13947 | 34 - 101 | 4.2e-17 | Wall-associated receptor kinase galacturonan-binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 680, 843 |
| AciI | CCGC | 7 cut(s) | 59, 168, 419, 678, 789, 841, 866 |
| AclWI | GGATC | 3 cut(s) | 149, 283, 889 |
| AfaI | GTAC | 5 cut(s) | 103, 208, 261, 452, 701 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 113, 298 |
| AgsI | TTSAA | 5 cut(s) | 66, 367, 518, 749, 814 |
| AjnI | CCWGG | 2 cut(s) | 157, 755 |
| AluBI | AGCT | 6 cut(s) | 132, 180, 396, 480, 524, 804 |
| AluI | AGCT | 6 cut(s) | 132, 180, 396, 480, 524, 804 |
| AlwI | GGATC | 3 cut(s) | 149, 283, 889 |
| Ama87I | CYCGRG | 1 cut(s) | 903 |
| AoxI | GGCC | 1 cut(s) | 87 |
| ApeKI | GCWGC | 1 cut(s) | 480 |
| AspLEI | GCGC | 1 cut(s) | 606 |
| AspS9I | GGNCC | 2 cut(s) | 87, 791 |
| AsuC2I | CCSGG | 1 cut(s) | 85 |
| AvaI | CYCGRG | 1 cut(s) | 903 |
| AvaII | GGWCC | 1 cut(s) | 791 |
| BauI | CACGAG | 1 cut(s) | 296 |
| BbsI | GAAGAC | 2 cut(s) | 11, 355 |
| BbvI | GCAGC | 1 cut(s) | 467 |
| BccI | CCATC | 6 cut(s) | 848, 870, 900, 906, 931, 980 |
| BceAI | ACGGC | 2 cut(s) | 212, 344 |
| BciT130I | CCWGG | 2 cut(s) | 159, 757 |
| BcnI | CCSGG | 1 cut(s) | 85 |
| BfaI | CTAG | 2 cut(s) | 668, 734 |
| BfoI | RGCGCY | 1 cut(s) | 607 |
| BisI | GCNGC | 3 cut(s) | 169, 481, 841 |
| BlsI | GCNGC | 3 cut(s) | 170, 482, 842 |
| Bme1390I | CCNGG | 3 cut(s) | 85, 159, 757 |
| Bme18I | GGWCC | 1 cut(s) | 791 |
| BmeT110I | CYCGRG | 1 cut(s) | 903 |
| BmgT120I | GGNCC | 2 cut(s) | 87, 791 |
| BmiI | GGNNCC | 1 cut(s) | 88 |
| BmrFI | CCNGG | 3 cut(s) | 85, 159, 757 |
| BmrI | ACTGGG | 3 cut(s) | 338, 964, 990 |
| BmsI | GCATC | 3 cut(s) | 292, 540, 555 |
| BmuI | ACTGGG | 3 cut(s) | 338, 964, 990 |
| BpiI | GAAGAC | 2 cut(s) | 11, 355 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 827, 859 |
| Bpu10I | CCTNAGC | 1 cut(s) | 476 |
| BpuMI | CCSGG | 1 cut(s) | 85 |
| BsaAI | YACGTR | 1 cut(s) | 259 |
| BsaBI | GATNNNNATC | 1 cut(s) | 880 |
| BsaJI | CCNNGG | 3 cut(s) | 84, 321, 904 |
| BsaWI | WCCGGW | 1 cut(s) | 827 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 320, 350 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 113, 298 |
| Bse118I | RCCGGY | 1 cut(s) | 542 |
| Bse1I | ACTGG | 4 cut(s) | 210, 344, 959, 985 |
| Bse3DI | GCAATG | 1 cut(s) | 865 |
| Bse8I | GATNNNNATC | 1 cut(s) | 880 |
| BseBI | CCWGG | 2 cut(s) | 159, 757 |
| BseDI | CCNNGG | 3 cut(s) | 84, 321, 904 |
| BseGI | GGATG | 9 cut(s) | 307, 448, 546, 776, 859, 881, 892, 898, 923 |
| BseJI | GATNNNNATC | 1 cut(s) | 880 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 113, 298 |
| BseMI | GCAATG | 1 cut(s) | 865 |
| BseMII | CTCAG | 1 cut(s) | 467 |
| BseNI | ACTGG | 4 cut(s) | 210, 344, 959, 985 |
| BseXI | GCAGC | 1 cut(s) | 467 |
| BsgI | GTGCAG | 1 cut(s) | 466 |
| BshFI | GGCC | 1 cut(s) | 89 |
| BsiHKCI | CYCGRG | 1 cut(s) | 903 |
| BsiSI | CCGG | 4 cut(s) | 84, 543, 626, 828 |
| BslFI | GGGAC | 2 cut(s) | 658, 953 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 113, 298 |
| BsmFI | GGGAC | 2 cut(s) | 658, 953 |
| BsnI | GGCC | 1 cut(s) | 89 |
| BsoBI | CYCGRG | 1 cut(s) | 903 |
| Bsp143I | GATC | 4 cut(s) | 154, 288, 505, 881 |
| BspACI | CCGC | 7 cut(s) | 59, 168, 419, 678, 789, 841, 866 |
| BspANI | GGCC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 1 cut(s) | 468 |
| BspLI | GGNNCC | 1 cut(s) | 88 |
| BspPI | GGATC | 3 cut(s) | 149, 283, 889 |
| BsrBI | CCGCTC | 2 cut(s) | 680, 843 |
| BsrDI | GCAATG | 1 cut(s) | 865 |
| BsrFI | RCCGGY | 1 cut(s) | 542 |
| BsrI | ACTGG | 4 cut(s) | 210, 344, 959, 985 |
| BssAI | RCCGGY | 1 cut(s) | 542 |
| BssECI | CCNNGG | 3 cut(s) | 84, 321, 904 |
| BssMI | GATC | 4 cut(s) | 154, 288, 505, 881 |
| BssSI | CACGAG | 1 cut(s) | 296 |
| BssT1I | CCWWGG | 1 cut(s) | 321 |
| Bst2BI | CACGAG | 1 cut(s) | 296 |
| Bst2UI | CCWGG | 2 cut(s) | 159, 757 |
| Bst4CI | ACNGT | 4 cut(s) | 40, 206, 460, 580 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 559 |
| BstBAI | YACGTR | 1 cut(s) | 259 |
| BstDEI | CTNAG | 1 cut(s) | 476 |
| BstF5I | GGATG | 9 cut(s) | 307, 448, 546, 776, 859, 881, 892, 898, 923 |
| BstH2I | RGCGCY | 1 cut(s) | 607 |
| BstHHI | GCGC | 1 cut(s) | 606 |
| BstKTI | GATC | 4 cut(s) | 157, 291, 508, 884 |
| BstMBI | GATC | 4 cut(s) | 154, 288, 505, 881 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 177 |
| BstNI | CCWGG | 2 cut(s) | 159, 757 |
| BstSCI | CCNGG | 3 cut(s) | 83, 157, 755 |
| BstSNI | TACGTA | 1 cut(s) | 259 |
| BstV1I | GCAGC | 1 cut(s) | 467 |
| BstV2I | GAAGAC | 2 cut(s) | 11, 355 |
| BstX2I | RGATCY | 1 cut(s) | 154 |
| BstYI | RGATCY | 1 cut(s) | 154 |
| BsuRI | GGCC | 1 cut(s) | 89 |
| BtsCI | GGATG | 9 cut(s) | 307, 448, 546, 776, 859, 881, 892, 898, 923 |
| BtsI | GCAGTG | 1 cut(s) | 163 |
| BtsIMutI | CAGTG | 5 cut(s) | 163, 465, 585, 690, 978 |
| CfoI | GCGC | 1 cut(s) | 606 |
| Cfr10I | RCCGGY | 1 cut(s) | 542 |
| Cfr13I | GGNCC | 2 cut(s) | 87, 791 |
| Csp6I | GTAC | 5 cut(s) | 102, 207, 260, 451, 700 |
| CviAII | CATG | 5 cut(s) | 224, 528, 595, 661, 823 |
| CviQI | GTAC | 5 cut(s) | 102, 207, 260, 451, 700 |
| DdeI | CTNAG | 1 cut(s) | 476 |
| DpnI | GATC | 4 cut(s) | 156, 290, 507, 883 |
| DpnII | GATC | 4 cut(s) | 154, 288, 505, 881 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 559 |
| EarI | CTCTTC | 2 cut(s) | 51, 559 |
| EciI | GGCGGA | 1 cut(s) | 408 |
| Eco105I | TACGTA | 1 cut(s) | 259 |
| Eco130I | CCWWGG | 1 cut(s) | 321 |
| Eco47I | GGWCC | 1 cut(s) | 791 |
| Eco88I | CYCGRG | 1 cut(s) | 903 |
| EcoRII | CCWGG | 2 cut(s) | 157, 755 |
| EcoT14I | CCWWGG | 1 cut(s) | 321 |
| EcoT22I | ATGCAT | 1 cut(s) | 533 |
| ErhI | CCWWGG | 1 cut(s) | 321 |
| FaeI | CATG | 5 cut(s) | 227, 531, 598, 664, 826 |
| FaqI | GGGAC | 2 cut(s) | 658, 953 |
| FatI | CATG | 5 cut(s) | 223, 527, 594, 660, 822 |
| FauI | CCCGC | 2 cut(s) | 685, 859 |
| FauNDI | CATATG | 1 cut(s) | 739 |
| Fnu4HI | GCNGC | 3 cut(s) | 169, 481, 841 |
| FokI | GGATG | 9 cut(s) | 314, 455, 533, 783, 866, 879, 885, 888, 910 |
| Fsp4HI | GCNGC | 3 cut(s) | 169, 481, 841 |
| FspBI | CTAG | 2 cut(s) | 668, 734 |
| GlaI | GCGC | 1 cut(s) | 605 |
| GluI | GCNGC | 3 cut(s) | 169, 481, 841 |
| HaeII | RGCGCY | 1 cut(s) | 607 |
| HaeIII | GGCC | 1 cut(s) | 89 |
| HapII | CCGG | 4 cut(s) | 84, 543, 626, 828 |
| HhaI | GCGC | 1 cut(s) | 606 |
| Hin1II | CATG | 5 cut(s) | 227, 531, 598, 664, 826 |
| Hin6I | GCGC | 1 cut(s) | 604 |
| HinP1I | GCGC | 1 cut(s) | 604 |
| HinfI | GANTC | 4 cut(s) | 294, 563, 622, 960 |
| HpaII | CCGG | 4 cut(s) | 84, 543, 626, 828 |
| Hpy166II | GTNNAC | 5 cut(s) | 34, 146, 313, 349, 576 |
| Hpy188I | TCNGA | 4 cut(s) | 97, 293, 505, 562 |
| Hpy188III | TCNNGA | 3 cut(s) | 246, 475, 535 |
| Hpy8I | GTNNAC | 5 cut(s) | 34, 146, 313, 349, 576 |
| HpyAV | CCTTC | 1 cut(s) | 117 |
| HpyCH4III | ACNGT | 4 cut(s) | 40, 206, 460, 580 |
| HpyCH4IV | ACGT | 1 cut(s) | 258 |
| HpyCH4V | TGCA | 4 cut(s) | 483, 531, 648, 776 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 177 |
| HpyF3I | CTNAG | 1 cut(s) | 476 |
| HpySE526I | ACGT | 1 cut(s) | 258 |
| Hsp92II | CATG | 5 cut(s) | 227, 531, 598, 664, 826 |
| HspAI | GCGC | 1 cut(s) | 604 |
| Kzo9I | GATC | 4 cut(s) | 154, 288, 505, 881 |
| LmnI | GCTCC | 2 cut(s) | 529, 685 |
| Lsp1109I | GCAGC | 1 cut(s) | 467 |
| LweI | GCATC | 3 cut(s) | 292, 540, 555 |
| MaeI | CTAG | 2 cut(s) | 668, 734 |
| MaeII | ACGT | 1 cut(s) | 258 |
| MalI | GATC | 4 cut(s) | 156, 290, 507, 883 |
| MbiI | CCGCTC | 2 cut(s) | 680, 843 |
| MboI | GATC | 4 cut(s) | 154, 288, 505, 881 |
| MboII | GAAGA | 7 cut(s) | 11, 38, 47, 355, 546, 558, 626 |
| MflI | RGATCY | 1 cut(s) | 154 |
| MluCI | AATT | 4 cut(s) | 185, 271, 468, 496 |
| MlyI | GAGTC | 2 cut(s) | 288, 631 |
| MmeI | TCCRAC | 2 cut(s) | 316, 363 |
| MnlI | CCTC | 4 cut(s) | 190, 474, 568, 899 |
| Mph1103I | ATGCAT | 1 cut(s) | 533 |
| MseI | TTAA | 3 cut(s) | 123, 414, 818 |
| MspI | CCGG | 4 cut(s) | 84, 543, 626, 828 |
| MspR9I | CCNGG | 3 cut(s) | 85, 159, 757 |
| MvaI | CCWGG | 2 cut(s) | 159, 757 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 177 |
| NciI | CCSGG | 1 cut(s) | 85 |
| NdeI | CATATG | 1 cut(s) | 739 |
| NdeII | GATC | 4 cut(s) | 154, 288, 505, 881 |
| NlaIII | CATG | 5 cut(s) | 227, 531, 598, 664, 826 |
| NlaIV | GGNNCC | 1 cut(s) | 88 |
| NsiI | ATGCAT | 1 cut(s) | 533 |
| PfeI | GAWTC | 2 cut(s) | 563, 960 |
| PfoI | TCCNGGA | 1 cut(s) | 157 |
| PkrI | GCNGC | 3 cut(s) | 170, 482, 842 |
| PleI | GAGTC | 2 cut(s) | 288, 630 |
| PpsI | GAGTC | 2 cut(s) | 288, 630 |
| Ppu21I | YACGTR | 1 cut(s) | 259 |
| Psp6I | CCWGG | 2 cut(s) | 157, 755 |
| PspGI | CCWGG | 2 cut(s) | 157, 755 |
| PspN4I | GGNNCC | 1 cut(s) | 88 |
| PspPI | GGNCC | 2 cut(s) | 87, 791 |
| PsuI | RGATCY | 1 cut(s) | 154 |
| RsaI | GTAC | 5 cut(s) | 103, 208, 261, 452, 701 |
| RsaNI | GTAC | 5 cut(s) | 102, 207, 260, 451, 700 |
| SaqAI | TTAA | 3 cut(s) | 123, 414, 818 |
| SatI | GCNGC | 3 cut(s) | 169, 481, 841 |
| Sau3AI | GATC | 4 cut(s) | 154, 288, 505, 881 |
| Sau96I | GGNCC | 2 cut(s) | 87, 791 |
| SchI | GAGTC | 2 cut(s) | 288, 631 |
| ScrFI | CCNGG | 3 cut(s) | 85, 159, 757 |
| SetI | ASST | 9 cut(s) | 134, 182, 261, 398, 456, 482, 526, 806, 910 |
| SfaNI | GCATC | 3 cut(s) | 292, 540, 555 |
| SinI | GGWCC | 1 cut(s) | 791 |
| SnaBI | TACGTA | 1 cut(s) | 259 |
| Sse9I | AATT | 4 cut(s) | 185, 271, 468, 496 |
| SsiI | CCGC | 7 cut(s) | 59, 168, 419, 678, 789, 841, 866 |
| SspI | AATATT | 1 cut(s) | 254 |
| SspMI | CTAG | 2 cut(s) | 668, 734 |
| StyD4I | CCNGG | 3 cut(s) | 83, 157, 755 |
| StyI | CCWWGG | 1 cut(s) | 321 |
| TaaI | ACNGT | 4 cut(s) | 40, 206, 460, 580 |
| TaiI | ACGT | 1 cut(s) | 261 |
| TasI | AATT | 4 cut(s) | 185, 271, 468, 496 |
| TatI | WGTACW | 2 cut(s) | 101, 699 |
| TauI | GCSGC | 2 cut(s) | 171, 843 |
| TfiI | GAWTC | 2 cut(s) | 563, 960 |
| Tru1I | TTAA | 3 cut(s) | 123, 414, 818 |
| Tru9I | TTAA | 3 cut(s) | 123, 414, 818 |
| TscAI | CASTG | 5 cut(s) | 170, 465, 585, 697, 985 |
| TseI | GCWGC | 1 cut(s) | 480 |
| TspDTI | ATGAA | 4 cut(s) | 198, 583, 627, 813 |
| TspRI | CASTG | 5 cut(s) | 170, 465, 585, 697, 985 |
| VpaK11BI | GGWCC | 1 cut(s) | 791 |
| XspI | CTAG | 2 cut(s) | 668, 734 |
| Zsp2I | ATGCAT | 1 cut(s) | 533 |