pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-rbx1 | PF12678 | 30 - 76 | 1.1e-06 | RING-H2 zinc finger domain |
| zf-RING_2 | PF13639 | 35 - 76 | 2.4e-09 | Ring finger domain |
| zf-RING_11 | PF17123 | 36 - 63 | 6e-07 | RING-like zinc finger |
| zf-C3HC4_2 | PF13923 | 36 - 76 | 2.6e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4 | PF00097 | 36 - 76 | 8.7e-06 | Zinc finger, C3HC4 type (RING finger) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 347 |
| AccBSI | CCGCTC | 1 cut(s) | 30 |
| AciI | CCGC | 2 cut(s) | 30, 62 |
| AclWI | GGATC | 3 cut(s) | 134, 718, 1057 |
| AcoI | YGGCCR | 1 cut(s) | 503 |
| AcsI | RAATTY | 2 cut(s) | 170, 1117 |
| AcuI | CTGAAG | 3 cut(s) | 164, 648, 857 |
| AfaI | GTAC | 2 cut(s) | 322, 754 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 347 |
| AflIII | ACRYGT | 1 cut(s) | 1148 |
| AgeI | ACCGGT | 1 cut(s) | 155 |
| AgsI | TTSAA | 5 cut(s) | 194, 359, 401, 885, 1170 |
| AjnI | CCWGG | 3 cut(s) | 13, 84, 513 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 899, 931 |
| AluBI | AGCT | 7 cut(s) | 210, 243, 425, 554, 593, 800, 1145 |
| AluI | AGCT | 7 cut(s) | 210, 243, 425, 554, 593, 800, 1145 |
| Alw21I | GWGCWC | 1 cut(s) | 893 |
| Alw26I | GTCTC | 1 cut(s) | 768 |
| AlwI | GGATC | 3 cut(s) | 134, 718, 1057 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 707 |
| Ama87I | CYCGRG | 1 cut(s) | 651 |
| AoxI | GGCC | 4 cut(s) | 42, 472, 503, 803 |
| ApeKI | GCWGC | 6 cut(s) | 232, 425, 428, 431, 434, 1154 |
| ApoI | RAATTY | 2 cut(s) | 170, 1117 |
| AsiGI | ACCGGT | 1 cut(s) | 155 |
| AspS9I | GGNCC | 6 cut(s) | 43, 472, 668, 686, 803, 947 |
| AsuHPI | GGTGA | 2 cut(s) | 596, 612 |
| AvaI | CYCGRG | 1 cut(s) | 651 |
| AvaII | GGWCC | 3 cut(s) | 668, 686, 947 |
| BaeGI | GKGCMC | 1 cut(s) | 451 |
| BbsI | GAAGAC | 2 cut(s) | 511, 735 |
| Bbv12I | GWGCWC | 1 cut(s) | 893 |
| BbvCI | CCTCAGC | 1 cut(s) | 700 |
| BbvI | GCAGC | 6 cut(s) | 244, 412, 415, 418, 421, 1141 |
| BccI | CCATC | 5 cut(s) | 245, 568, 733, 814, 994 |
| BciT130I | CCWGG | 3 cut(s) | 15, 86, 515 |
| BcoDI | GTCTC | 1 cut(s) | 768 |
| BfaI | CTAG | 3 cut(s) | 714, 756, 1164 |
| BfmI | CTRYAG | 1 cut(s) | 1155 |
| BisI | GCNGC | 8 cut(s) | 31, 63, 233, 426, 429, 432, 435, 1155 |
| BlsI | GCNGC | 8 cut(s) | 32, 64, 234, 427, 430, 433, 436, 1156 |
| BmcAI | AGTACT | 2 cut(s) | 322, 754 |
| Bme1390I | CCNGG | 3 cut(s) | 15, 86, 515 |
| Bme18I | GGWCC | 3 cut(s) | 668, 686, 947 |
| BmeT110I | CYCGRG | 1 cut(s) | 651 |
| BmgT120I | GGNCC | 6 cut(s) | 43, 472, 668, 686, 803, 947 |
| BmiI | GGNNCC | 2 cut(s) | 9, 949 |
| BmrFI | CCNGG | 3 cut(s) | 15, 86, 515 |
| BmsI | GCATC | 3 cut(s) | 91, 379, 713 |
| BpiI | GAAGAC | 2 cut(s) | 511, 735 |
| BpmI | CTGGAG | 1 cut(s) | 657 |
| Bpu10I | CCTNAGC | 1 cut(s) | 700 |
| BpuEI | CTTGAG | 1 cut(s) | 140 |
| BsaBI | GATNNNNATC | 1 cut(s) | 138 |
| BsaI | GGTCTC | 1 cut(s) | 768 |
| BsaWI | WCCGGW | 1 cut(s) | 155 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 38, 68, 899, 929 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 347 |
| Bse118I | RCCGGY | 1 cut(s) | 155 |
| Bse3DI | GCAATG | 1 cut(s) | 444 |
| Bse8I | GATNNNNATC | 1 cut(s) | 138 |
| BseBI | CCWGG | 3 cut(s) | 15, 86, 515 |
| BseGI | GGATG | 3 cut(s) | 337, 529, 725 |
| BseJI | GATNNNNATC | 1 cut(s) | 138 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BseMI | GCAATG | 1 cut(s) | 444 |
| BseMII | CTCAG | 3 cut(s) | 30, 714, 1115 |
| BseSI | GKGCMC | 1 cut(s) | 451 |
| BseXI | GCAGC | 6 cut(s) | 244, 412, 415, 418, 421, 1141 |
| BseYI | CCCAGC | 2 cut(s) | 58, 800 |
| BsgI | GTGCAG | 1 cut(s) | 873 |
| BshFI | GGCC | 4 cut(s) | 44, 474, 505, 805 |
| BshTI | ACCGGT | 1 cut(s) | 155 |
| BsiHKAI | GWGCWC | 1 cut(s) | 893 |
| BsiHKCI | CYCGRG | 1 cut(s) | 651 |
| BsiSI | CCGG | 1 cut(s) | 156 |
| BslFI | GGGAC | 3 cut(s) | 704, 763, 933 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BsmAI | GTCTC | 1 cut(s) | 768 |
| BsmFI | GGGAC | 3 cut(s) | 704, 763, 933 |
| BsmI | GAATGC | 2 cut(s) | 186, 637 |
| BsnI | GGCC | 4 cut(s) | 44, 474, 505, 805 |
| Bso31I | GGTCTC | 1 cut(s) | 768 |
| BsoBI | CYCGRG | 1 cut(s) | 651 |
| Bsp1286I | GDGCHC | 2 cut(s) | 451, 893 |
| Bsp143I | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| BspACI | CCGC | 2 cut(s) | 30, 62 |
| BspANI | GGCC | 4 cut(s) | 44, 474, 505, 805 |
| BspCNI | CTCAG | 3 cut(s) | 31, 713, 1116 |
| BspLI | GGNNCC | 2 cut(s) | 9, 949 |
| BspMAI | CTGCAG | 1 cut(s) | 1159 |
| BspPI | GGATC | 3 cut(s) | 134, 718, 1057 |
| BspQI | GCTCTTC | 1 cut(s) | 396 |
| BspTNI | GGTCTC | 1 cut(s) | 768 |
| BsrBI | CCGCTC | 1 cut(s) | 30 |
| BsrDI | GCAATG | 1 cut(s) | 444 |
| BsrFI | RCCGGY | 1 cut(s) | 155 |
| BssAI | RCCGGY | 1 cut(s) | 155 |
| BssMI | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| Bst2UI | CCWGG | 3 cut(s) | 15, 86, 515 |
| Bst4CI | ACNGT | 5 cut(s) | 270, 819, 929, 988, 1067 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 396 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 114 |
| BstC8I | GCNNGC | 6 cut(s) | 106, 164, 230, 451, 1143, 1159 |
| BstDEI | CTNAG | 4 cut(s) | 39, 421, 700, 1124 |
| BstF5I | GGATG | 3 cut(s) | 337, 529, 725 |
| BstKTI | GATC | 5 cut(s) | 142, 571, 713, 943, 1052 |
| BstMAI | GTCTC | 1 cut(s) | 768 |
| BstMBI | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 114, 216, 225, 431, 434, 1138, 1151 |
| BstNI | CCWGG | 3 cut(s) | 15, 86, 515 |
| BstNSI | RCATGY | 1 cut(s) | 1152 |
| BstSCI | CCNGG | 3 cut(s) | 13, 84, 513 |
| BstSFI | CTRYAG | 1 cut(s) | 1155 |
| BstSLI | GKGCMC | 1 cut(s) | 451 |
| BstV1I | GCAGC | 6 cut(s) | 244, 412, 415, 418, 421, 1141 |
| BstV2I | GAAGAC | 2 cut(s) | 511, 735 |
| BstX2I | RGATCY | 1 cut(s) | 710 |
| BstYI | RGATCY | 1 cut(s) | 710 |
| BsuRI | GGCC | 4 cut(s) | 44, 474, 505, 805 |
| BtsCI | GGATG | 3 cut(s) | 337, 529, 725 |
| BtsI | GCAGTG | 1 cut(s) | 861 |
| BtsIMutI | CAGTG | 3 cut(s) | 188, 856, 861 |
| Cac8I | GCNNGC | 6 cut(s) | 106, 164, 230, 451, 1143, 1159 |
| CaiI | CAGNNNCTG | 1 cut(s) | 707 |
| Cfr10I | RCCGGY | 1 cut(s) | 155 |
| Cfr13I | GGNCC | 6 cut(s) | 43, 472, 668, 686, 803, 947 |
| CseI | GACGC | 1 cut(s) | 995 |
| Csp6I | GTAC | 2 cut(s) | 321, 753 |
| CspAI | ACCGGT | 1 cut(s) | 155 |
| CviAII | CATG | 4 cut(s) | 167, 737, 997, 1149 |
| CviQI | GTAC | 2 cut(s) | 321, 753 |
| DdeI | CTNAG | 4 cut(s) | 39, 421, 700, 1124 |
| DpnI | GATC | 5 cut(s) | 141, 570, 712, 942, 1051 |
| DpnII | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| EaeI | YGGCCR | 1 cut(s) | 503 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 396 |
| EarI | CTCTTC | 2 cut(s) | 18, 396 |
| Eco31I | GGTCTC | 1 cut(s) | 768 |
| Eco47I | GGWCC | 3 cut(s) | 668, 686, 947 |
| Eco57I | CTGAAG | 3 cut(s) | 164, 648, 857 |
| Eco88I | CYCGRG | 1 cut(s) | 651 |
| EcoO109I | RGGNCCY | 1 cut(s) | 668 |
| EcoRII | CCWGG | 3 cut(s) | 13, 84, 513 |
| FaeI | CATG | 4 cut(s) | 170, 740, 1000, 1152 |
| FaqI | GGGAC | 3 cut(s) | 704, 763, 933 |
| FatI | CATG | 4 cut(s) | 166, 736, 996, 1148 |
| Fnu4HI | GCNGC | 8 cut(s) | 31, 63, 233, 426, 429, 432, 435, 1155 |
| FokI | GGATG | 3 cut(s) | 324, 516, 712 |
| Fsp4HI | GCNGC | 8 cut(s) | 31, 63, 233, 426, 429, 432, 435, 1155 |
| FspBI | CTAG | 3 cut(s) | 714, 756, 1164 |
| GluI | GCNGC | 8 cut(s) | 31, 63, 233, 426, 429, 432, 435, 1155 |
| GsaI | CCCAGC | 2 cut(s) | 62, 804 |
| GsuI | CTGGAG | 1 cut(s) | 657 |
| HaeIII | GGCC | 4 cut(s) | 44, 474, 505, 805 |
| HapII | CCGG | 1 cut(s) | 156 |
| HgaI | GACGC | 1 cut(s) | 995 |
| Hin1II | CATG | 4 cut(s) | 170, 740, 1000, 1152 |
| HincII | GTYRAC | 1 cut(s) | 153 |
| HindII | GTYRAC | 1 cut(s) | 153 |
| HinfI | GANTC | 5 cut(s) | 81, 846, 875, 1032, 1079 |
| HpaII | CCGG | 1 cut(s) | 156 |
| HphI | GGTGA | 2 cut(s) | 596, 612 |
| Hpy166II | GTNNAC | 2 cut(s) | 153, 587 |
| Hpy188III | TCNNGA | 8 cut(s) | 191, 651, 666, 708, 950, 1010, 1047, 1076 |
| Hpy8I | GTNNAC | 2 cut(s) | 153, 587 |
| HpyAV | CCTTC | 7 cut(s) | 153, 459, 606, 681, 832, 898, 968 |
| HpyCH4III | ACNGT | 5 cut(s) | 270, 819, 929, 988, 1067 |
| HpyCH4IV | ACGT | 1 cut(s) | 149 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 114, 216, 225, 431, 434, 1138, 1151 |
| HpyF3I | CTNAG | 4 cut(s) | 39, 421, 700, 1124 |
| HpySE526I | ACGT | 1 cut(s) | 149 |
| Hsp92II | CATG | 4 cut(s) | 170, 740, 1000, 1152 |
| Kzo9I | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| LguI | GCTCTTC | 1 cut(s) | 396 |
| LmnI | GCTCC | 3 cut(s) | 215, 598, 1003 |
| Lsp1109I | GCAGC | 6 cut(s) | 244, 412, 415, 418, 421, 1141 |
| LweI | GCATC | 3 cut(s) | 91, 379, 713 |
| MaeI | CTAG | 3 cut(s) | 714, 756, 1164 |
| MaeII | ACGT | 1 cut(s) | 149 |
| MaeIII | GTNAC | 3 cut(s) | 607, 618, 655 |
| MalI | GATC | 5 cut(s) | 141, 570, 712, 942, 1051 |
| MbiI | CCGCTC | 1 cut(s) | 30 |
| MboI | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| MboII | GAAGA | 7 cut(s) | 35, 170, 413, 511, 549, 666, 735 |
| MflI | RGATCY | 1 cut(s) | 710 |
| MhlI | GDGCHC | 2 cut(s) | 451, 893 |
| MluCI | AATT | 5 cut(s) | 170, 411, 509, 1117, 1171 |
| MlyI | GAGTC | 1 cut(s) | 884 |
| MmeI | TCCRAC | 2 cut(s) | 365, 881 |
| MseI | TTAA | 2 cut(s) | 245, 957 |
| MslI | CAYNNNNRTG | 1 cut(s) | 534 |
| MspA1I | CMGCKG | 1 cut(s) | 62 |
| MspI | CCGG | 1 cut(s) | 156 |
| MspR9I | CCNGG | 3 cut(s) | 15, 86, 515 |
| Mva1269I | GAATGC | 2 cut(s) | 186, 637 |
| MvaI | CCWGG | 3 cut(s) | 15, 86, 515 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 114, 216, 225, 431, 434, 1138, 1151 |
| NdeII | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| NlaIII | CATG | 4 cut(s) | 170, 740, 1000, 1152 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 949 |
| NmuCI | GTSAC | 2 cut(s) | 618, 655 |
| NspI | RCATGY | 1 cut(s) | 1152 |
| PaeR7I | CTCGAG | 1 cut(s) | 651 |
| PciI | ACATGT | 1 cut(s) | 1148 |
| PciSI | GCTCTTC | 1 cut(s) | 396 |
| PctI | GAATGC | 2 cut(s) | 186, 637 |
| PfeI | GAWTC | 4 cut(s) | 81, 846, 1032, 1079 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 347 |
| PfoI | TCCNGGA | 2 cut(s) | 13, 84 |
| PinAI | ACCGGT | 1 cut(s) | 155 |
| PkrI | GCNGC | 8 cut(s) | 32, 64, 234, 427, 430, 433, 436, 1156 |
| PleI | GAGTC | 1 cut(s) | 883 |
| PpsI | GAGTC | 1 cut(s) | 883 |
| PpuMI | RGGWCCY | 1 cut(s) | 668 |
| PscI | ACATGT | 1 cut(s) | 1148 |
| Psp5II | RGGWCCY | 1 cut(s) | 668 |
| Psp6I | CCWGG | 3 cut(s) | 13, 84, 513 |
| PspFI | CCCAGC | 2 cut(s) | 58, 800 |
| PspGI | CCWGG | 3 cut(s) | 13, 84, 513 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 949 |
| PspPI | GGNCC | 6 cut(s) | 43, 472, 668, 686, 803, 947 |
| PspPPI | RGGWCCY | 1 cut(s) | 668 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1051, 1083 |
| PstI | CTGCAG | 1 cut(s) | 1159 |
| PstNI | CAGNNNCTG | 1 cut(s) | 707 |
| PsuI | RGATCY | 1 cut(s) | 710 |
| RsaI | GTAC | 2 cut(s) | 322, 754 |
| RsaNI | GTAC | 2 cut(s) | 321, 753 |
| RseI | CAYNNNNRTG | 1 cut(s) | 534 |
| SapI | GCTCTTC | 1 cut(s) | 396 |
| SaqAI | TTAA | 2 cut(s) | 245, 957 |
| SatI | GCNGC | 8 cut(s) | 31, 63, 233, 426, 429, 432, 435, 1155 |
| Sau3AI | GATC | 5 cut(s) | 139, 568, 710, 940, 1049 |
| Sau96I | GGNCC | 6 cut(s) | 43, 472, 668, 686, 803, 947 |
| ScaI | AGTACT | 2 cut(s) | 322, 754 |
| SchI | GAGTC | 1 cut(s) | 884 |
| ScrFI | CCNGG | 3 cut(s) | 15, 86, 515 |
| SduI | GDGCHC | 2 cut(s) | 451, 893 |
| SfaNI | GCATC | 3 cut(s) | 91, 379, 713 |
| SfcI | CTRYAG | 1 cut(s) | 1155 |
| Sfr274I | CTCGAG | 1 cut(s) | 651 |
| SinI | GGWCC | 3 cut(s) | 668, 686, 947 |
| SlaI | CTCGAG | 1 cut(s) | 651 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 534 |
| SmlI | CTYRAG | 2 cut(s) | 119, 651 |
| SmoI | CTYRAG | 2 cut(s) | 119, 651 |
| Sse9I | AATT | 5 cut(s) | 170, 411, 509, 1117, 1171 |
| SsiI | CCGC | 2 cut(s) | 30, 62 |
| SspI | AATATT | 1 cut(s) | 330 |
| SspMI | CTAG | 3 cut(s) | 714, 756, 1164 |
| StyD4I | CCNGG | 3 cut(s) | 13, 84, 513 |
| TaaI | ACNGT | 5 cut(s) | 270, 819, 929, 988, 1067 |
| TaiI | ACGT | 1 cut(s) | 152 |
| TaqI | TCGA | 4 cut(s) | 316, 652, 844, 878 |
| TasI | AATT | 5 cut(s) | 170, 411, 509, 1117, 1171 |
| TatI | WGTACW | 2 cut(s) | 320, 752 |
| TauI | GCSGC | 2 cut(s) | 33, 65 |
| TfiI | GAWTC | 4 cut(s) | 81, 846, 1032, 1079 |
| Tru1I | TTAA | 2 cut(s) | 245, 957 |
| Tru9I | TTAA | 2 cut(s) | 245, 957 |
| TscAI | CASTG | 3 cut(s) | 188, 856, 861 |
| TseFI | GTSAC | 2 cut(s) | 618, 655 |
| TseI | GCWGC | 6 cut(s) | 232, 425, 428, 431, 434, 1154 |
| Tsp45I | GTSAC | 2 cut(s) | 618, 655 |
| TspDTI | ATGAA | 6 cut(s) | 164, 183, 323, 644, 878, 987 |
| TspGWI | ACGGA | 2 cut(s) | 589, 606 |
| TspRI | CASTG | 3 cut(s) | 188, 856, 861 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 347 |
| VpaK11BI | GGWCC | 3 cut(s) | 668, 686, 947 |
| XapI | RAATTY | 2 cut(s) | 170, 1117 |
| XceI | RCATGY | 1 cut(s) | 1152 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 797 |
| XhoI | CTCGAG | 1 cut(s) | 651 |
| XspI | CTAG | 3 cut(s) | 714, 756, 1164 |
| ZrmI | AGTACT | 2 cut(s) | 322, 754 |