Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 41 | 8.1e-09 | PPR repeat family |
| PPR_long | PF17177 | 12 - 133 | 3.8e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 28 - 76 | 3.3e-17 | PPR repeat family |
| PPR | PF01535 | 31 - 58 | 2.9e-07 | PPR repeat |
| PPR_1 | PF12854 | 33 - 55 | 2.8e-07 | PPR repeat |
| PPR_3 | PF13812 | 50 - 107 | 1.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 59 - 91 | 7.5e-14 | PPR repeat |
| PPR_2 | PF13041 | 62 - 111 | 8.9e-18 | PPR repeat family |
| PPR | PF01535 | 65 - 94 | 1.1e-08 | PPR repeat |
| TPR_24 | PF23276 | 65 - 157 | 1.3e-08 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 94 - 126 | 3.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 97 - 134 | 1.3e-06 | PPR repeat family |
| PPR_2 | PF13041 | 133 - 181 | 7.5e-16 | PPR repeat family |
| PPR_1 | PF12854 | 163 - 195 | 5.8e-12 | PPR repeat |
| PPR | PF01535 | 171 - 200 | 1.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 174 - 215 | 8.5e-11 | PPR repeat family |
| PPR_1 | PF12854 | 199 - 230 | 6.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 206 - 249 | 5.5e-08 | PPR repeat family |
| PPR | PF01535 | 206 - 235 | 9.9e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 351, 456 |
| AcoI | YGGCCR | 1 cut(s) | 280 |
| AgsI | TTSAA | 7 cut(s) | 157, 242, 299, 425, 452, 560, 683 |
| AluBI | AGCT | 5 cut(s) | 133, 286, 440, 571, 781 |
| AluI | AGCT | 5 cut(s) | 133, 286, 440, 571, 781 |
| Alw26I | GTCTC | 1 cut(s) | 650 |
| AoxI | GGCC | 3 cut(s) | 280, 322, 532 |
| ApeKI | GCWGC | 2 cut(s) | 571, 778 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 180 |
| AspS9I | GGNCC | 2 cut(s) | 532, 615 |
| AvaII | GGWCC | 1 cut(s) | 615 |
| BalI | TGGCCA | 1 cut(s) | 282 |
| BanII | GRGCYC | 1 cut(s) | 74 |
| BauI | CACGAG | 1 cut(s) | 32 |
| BbvI | GCAGC | 2 cut(s) | 558, 790 |
| BccI | CCATC | 4 cut(s) | 209, 314, 367, 602 |
| BcoDI | GTCTC | 1 cut(s) | 650 |
| BfmI | CTRYAG | 1 cut(s) | 708 |
| BglII | AGATCT | 2 cut(s) | 463, 763 |
| BisI | GCNGC | 2 cut(s) | 572, 779 |
| BlsI | GCNGC | 2 cut(s) | 573, 780 |
| Bme18I | GGWCC | 1 cut(s) | 615 |
| BmgT120I | GGNCC | 2 cut(s) | 532, 615 |
| BmiI | GGNNCC | 1 cut(s) | 73 |
| BmsI | GCATC | 3 cut(s) | 258, 703, 725 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 245, 277 |
| BpmI | CTGGAG | 1 cut(s) | 588 |
| BpuEI | CTTGAG | 1 cut(s) | 713 |
| BsaJI | CCNNGG | 2 cut(s) | 75, 634 |
| BseDI | CCNNGG | 2 cut(s) | 75, 634 |
| BseGI | GGATG | 2 cut(s) | 10, 602 |
| BseMII | CTCAG | 2 cut(s) | 278, 566 |
| BseRI | GAGGAG | 1 cut(s) | 36 |
| BseXI | GCAGC | 2 cut(s) | 558, 790 |
| BshFI | GGCC | 3 cut(s) | 282, 324, 534 |
| BsmAI | GTCTC | 1 cut(s) | 650 |
| BsnI | GGCC | 3 cut(s) | 282, 324, 534 |
| Bsp1286I | GDGCHC | 1 cut(s) | 74 |
| Bsp143I | GATC | 3 cut(s) | 52, 463, 763 |
| Bsp19I | CCATGG | 1 cut(s) | 75 |
| BspACI | CCGC | 2 cut(s) | 351, 456 |
| BspANI | GGCC | 3 cut(s) | 282, 324, 534 |
| BspCNI | CTCAG | 2 cut(s) | 277, 567 |
| BspLI | GGNNCC | 1 cut(s) | 73 |
| BspMAI | CTGCAG | 1 cut(s) | 712 |
| BssECI | CCNNGG | 2 cut(s) | 75, 634 |
| BssMI | GATC | 3 cut(s) | 52, 463, 763 |
| BssSI | CACGAG | 1 cut(s) | 32 |
| BssT1I | CCWWGG | 1 cut(s) | 75 |
| Bst2BI | CACGAG | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 3 cut(s) | 14, 193, 653 |
| BstC8I | GCNNGC | 1 cut(s) | 284 |
| BstDEI | CTNAG | 2 cut(s) | 264, 575 |
| BstDSI | CCRYGG | 1 cut(s) | 75 |
| BstF5I | GGATG | 2 cut(s) | 10, 602 |
| BstKTI | GATC | 3 cut(s) | 55, 466, 766 |
| BstMAI | GTCTC | 1 cut(s) | 650 |
| BstMBI | GATC | 3 cut(s) | 52, 463, 763 |
| BstSFI | CTRYAG | 1 cut(s) | 708 |
| BstV1I | GCAGC | 2 cut(s) | 558, 790 |
| BstX2I | RGATCY | 2 cut(s) | 463, 763 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 388, 612 |
| BstYI | RGATCY | 2 cut(s) | 463, 763 |
| BsuRI | GGCC | 3 cut(s) | 282, 324, 534 |
| BtgI | CCRYGG | 1 cut(s) | 75 |
| BtsCI | GGATG | 2 cut(s) | 10, 602 |
| BtsIMutI | CAGTG | 1 cut(s) | 658 |
| Cac8I | GCNNGC | 1 cut(s) | 284 |
| Cfr13I | GGNCC | 2 cut(s) | 532, 615 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 193, 228 |
| CviAII | CATG | 2 cut(s) | 76, 545 |
| DdeI | CTNAG | 2 cut(s) | 264, 575 |
| DpnI | GATC | 3 cut(s) | 54, 465, 765 |
| DpnII | GATC | 3 cut(s) | 52, 463, 763 |
| EaeI | YGGCCR | 1 cut(s) | 280 |
| Eco130I | CCWWGG | 1 cut(s) | 75 |
| Eco24I | GRGCYC | 1 cut(s) | 74 |
| Eco47I | GGWCC | 1 cut(s) | 615 |
| EcoO109I | RGGNCCY | 1 cut(s) | 532 |
| EcoT14I | CCWWGG | 1 cut(s) | 75 |
| EcoT22I | ATGCAT | 1 cut(s) | 718 |
| EcoT38I | GRGCYC | 1 cut(s) | 74 |
| ErhI | CCWWGG | 1 cut(s) | 75 |
| FaeI | CATG | 2 cut(s) | 79, 548 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 378, 410, 675, 707 |
| FatI | CATG | 2 cut(s) | 75, 544 |
| Fnu4HI | GCNGC | 2 cut(s) | 572, 779 |
| FokI | GGATG | 2 cut(s) | 17, 609 |
| FriOI | GRGCYC | 1 cut(s) | 74 |
| Fsp4HI | GCNGC | 2 cut(s) | 572, 779 |
| GluI | GCNGC | 2 cut(s) | 572, 779 |
| GsuI | CTGGAG | 1 cut(s) | 588 |
| HaeIII | GGCC | 3 cut(s) | 282, 324, 534 |
| Hin1II | CATG | 2 cut(s) | 79, 548 |
| HinfI | GANTC | 2 cut(s) | 452, 526 |
| Hpy166II | GTNNAC | 2 cut(s) | 409, 794 |
| Hpy188I | TCNGA | 3 cut(s) | 90, 267, 635 |
| Hpy188III | TCNNGA | 5 cut(s) | 185, 242, 605, 683, 795 |
| Hpy8I | GTNNAC | 2 cut(s) | 409, 794 |
| HpyAV | CCTTC | 3 cut(s) | 419, 587, 745 |
| HpyCH4III | ACNGT | 3 cut(s) | 14, 193, 653 |
| HpyCH4V | TGCA | 7 cut(s) | 31, 120, 225, 271, 710, 716, 778 |
| HpyF3I | CTNAG | 2 cut(s) | 264, 575 |
| Hsp92II | CATG | 2 cut(s) | 79, 548 |
| Kzo9I | GATC | 3 cut(s) | 52, 463, 763 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| Lsp1109I | GCAGC | 2 cut(s) | 558, 790 |
| LweI | GCATC | 3 cut(s) | 258, 703, 725 |
| MaeIII | GTNAC | 3 cut(s) | 8, 193, 329 |
| MalI | GATC | 3 cut(s) | 54, 465, 765 |
| MboI | GATC | 3 cut(s) | 52, 463, 763 |
| MflI | RGATCY | 2 cut(s) | 463, 763 |
| MhlI | GDGCHC | 1 cut(s) | 74 |
| MlsI | TGGCCA | 1 cut(s) | 282 |
| MluCI | AATT | 5 cut(s) | 359, 447, 555, 678, 728 |
| MluNI | TGGCCA | 1 cut(s) | 282 |
| MmeI | TCCRAC | 1 cut(s) | 593 |
| MnlI | CCTC | 6 cut(s) | 14, 28, 177, 581, 629, 690 |
| Mox20I | TGGCCA | 1 cut(s) | 282 |
| Mph1103I | ATGCAT | 1 cut(s) | 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 180 |
| MscI | TGGCCA | 1 cut(s) | 282 |
| MseI | TTAA | 5 cut(s) | 81, 366, 551, 644, 785 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| Msp20I | TGGCCA | 1 cut(s) | 282 |
| MspA1I | CMGCKG | 1 cut(s) | 781 |
| NcoI | CCATGG | 1 cut(s) | 75 |
| NdeII | GATC | 3 cut(s) | 52, 463, 763 |
| NlaIII | CATG | 2 cut(s) | 79, 548 |
| NlaIV | GGNNCC | 1 cut(s) | 73 |
| NsiI | ATGCAT | 1 cut(s) | 718 |
| PdmI | GAANNNNTTC | 1 cut(s) | 180 |
| PfeI | GAWTC | 2 cut(s) | 452, 526 |
| PkrI | GCNGC | 2 cut(s) | 573, 780 |
| PspN4I | GGNNCC | 1 cut(s) | 73 |
| PspPI | GGNCC | 2 cut(s) | 532, 615 |
| PstI | CTGCAG | 1 cut(s) | 712 |
| PsuI | RGATCY | 2 cut(s) | 463, 763 |
| PvuII | CAGCTG | 1 cut(s) | 781 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SaqAI | TTAA | 5 cut(s) | 81, 366, 551, 644, 785 |
| SatI | GCNGC | 2 cut(s) | 572, 779 |
| Sau3AI | GATC | 3 cut(s) | 52, 463, 763 |
| Sau96I | GGNCC | 2 cut(s) | 532, 615 |
| SduI | GDGCHC | 1 cut(s) | 74 |
| SetI | ASST | 9 cut(s) | 135, 277, 288, 430, 442, 573, 620, 783, 793 |
| SfaNI | GCATC | 3 cut(s) | 258, 703, 725 |
| SfcI | CTRYAG | 1 cut(s) | 708 |
| SinI | GGWCC | 1 cut(s) | 615 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| SmlI | CTYRAG | 1 cut(s) | 692 |
| SmoI | CTYRAG | 1 cut(s) | 692 |
| Sse9I | AATT | 5 cut(s) | 359, 447, 555, 678, 728 |
| SsiI | CCGC | 2 cut(s) | 351, 456 |
| StyI | CCWWGG | 1 cut(s) | 75 |
| TaaI | ACNGT | 3 cut(s) | 14, 193, 653 |
| TaqI | TCGA | 2 cut(s) | 135, 749 |
| TasI | AATT | 5 cut(s) | 359, 447, 555, 678, 728 |
| TfiI | GAWTC | 2 cut(s) | 452, 526 |
| Tru1I | TTAA | 5 cut(s) | 81, 366, 551, 644, 785 |
| Tru9I | TTAA | 5 cut(s) | 81, 366, 551, 644, 785 |
| TscAI | CASTG | 1 cut(s) | 658 |
| TseI | GCWGC | 2 cut(s) | 571, 778 |
| TspDTI | ATGAA | 1 cut(s) | 686 |
| TspRI | CASTG | 1 cut(s) | 658 |
| VpaK11BI | GGWCC | 1 cut(s) | 615 |
| XmnI | GAANNNNTTC | 1 cut(s) | 180 |
| Zsp2I | ATGCAT | 1 cut(s) | 718 |