Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 7 - 38 | 1.4e-11 | PPR repeat |
| PPR_2 | PF13041 | 9 - 58 | 1.5e-17 | PPR repeat family |
| PPR_long | PF17177 | 13 - 95 | 1.5e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 33 - 91 | 1.6e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 40 - 73 | 2e-12 | PPR repeat |
| PPR_2 | PF13041 | 44 - 93 | 5.7e-18 | PPR repeat family |
| PPR | PF01535 | 47 - 76 | 2.1e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AflIII | ACRYGT | 1 cut(s) | 72 |
| AgsI | TTSAA | 1 cut(s) | 208 |
| AluBI | AGCT | 1 cut(s) | 194 |
| AluI | AGCT | 1 cut(s) | 194 |
| Alw21I | GWGCWC | 1 cut(s) | 246 |
| Alw44I | GTGCAC | 1 cut(s) | 242 |
| AoxI | GGCC | 1 cut(s) | 178 |
| ApaLI | GTGCAC | 1 cut(s) | 242 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| BaeGI | GKGCMC | 1 cut(s) | 246 |
| Bbv12I | GWGCWC | 1 cut(s) | 246 |
| BccI | CCATC | 2 cut(s) | 56, 280 |
| BfmI | CTRYAG | 1 cut(s) | 40 |
| BglII | AGATCT | 1 cut(s) | 228 |
| BmsI | GCATC | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 106, 136 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| BseGI | GGATG | 1 cut(s) | 291 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseRI | GAGGAG | 1 cut(s) | 127 |
| BseSI | GKGCMC | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 180 |
| BsiHKAI | GWGCWC | 1 cut(s) | 246 |
| BsnI | GGCC | 1 cut(s) | 180 |
| Bsp1286I | GDGCHC | 1 cut(s) | 246 |
| Bsp143I | GATC | 2 cut(s) | 8, 228 |
| BspANI | GGCC | 1 cut(s) | 180 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssMI | GATC | 2 cut(s) | 8, 228 |
| Bst4CI | ACNGT | 2 cut(s) | 59, 256 |
| BstDEI | CTNAG | 1 cut(s) | 31 |
| BstF5I | GGATG | 1 cut(s) | 291 |
| BstKTI | GATC | 2 cut(s) | 11, 231 |
| BstMBI | GATC | 2 cut(s) | 8, 228 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 177 |
| BstSFI | CTRYAG | 1 cut(s) | 40 |
| BstSLI | GKGCMC | 1 cut(s) | 246 |
| BstX2I | RGATCY | 1 cut(s) | 228 |
| BstYI | RGATCY | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 180 |
| BtsCI | GGATG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 1 cut(s) | 188 |
| CviAII | CATG | 1 cut(s) | 161 |
| CviJI | RGCY | 3 cut(s) | 25, 180, 194 |
| CviKI_1 | RGCY | 3 cut(s) | 25, 180, 194 |
| DdeI | CTNAG | 1 cut(s) | 31 |
| DpnI | GATC | 2 cut(s) | 10, 230 |
| DpnII | GATC | 2 cut(s) | 8, 228 |
| EcoT22I | ATGCAT | 1 cut(s) | 91 |
| FaeI | CATG | 1 cut(s) | 164 |
| FaiI | YATR | 3 cut(s) | 42, 147, 162 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 14, 46 |
| FatI | CATG | 1 cut(s) | 160 |
| HaeIII | GGCC | 1 cut(s) | 180 |
| Hin1II | CATG | 1 cut(s) | 164 |
| HinfI | GANTC | 1 cut(s) | 157 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy166II | GTNNAC | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 1 cut(s) | 106 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 236 |
| Hpy8I | GTNNAC | 1 cut(s) | 244 |
| HpyAV | CCTTC | 1 cut(s) | 259 |
| HpyCH4III | ACNGT | 2 cut(s) | 59, 256 |
| HpyCH4IV | ACGT | 2 cut(s) | 74, 135 |
| HpyCH4V | TGCA | 3 cut(s) | 89, 171, 244 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 177 |
| HpyF3I | CTNAG | 1 cut(s) | 31 |
| HpySE526I | ACGT | 2 cut(s) | 74, 135 |
| Hsp92II | CATG | 1 cut(s) | 164 |
| Kzo9I | GATC | 2 cut(s) | 8, 228 |
| LmnI | GCTCC | 1 cut(s) | 114 |
| LpnPI | CCDG | 3 cut(s) | 27, 194, 249 |
| LweI | GCATC | 1 cut(s) | 76 |
| MaeII | ACGT | 2 cut(s) | 74, 135 |
| MalI | GATC | 2 cut(s) | 10, 230 |
| MboI | GATC | 2 cut(s) | 8, 228 |
| MflI | RGATCY | 1 cut(s) | 228 |
| MhlI | GDGCHC | 1 cut(s) | 246 |
| MnlI | CCTC | 4 cut(s) | 105, 107, 160, 274 |
| Mph1103I | ATGCAT | 1 cut(s) | 91 |
| MseI | TTAA | 2 cut(s) | 77, 93 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 177 |
| NdeII | GATC | 2 cut(s) | 8, 228 |
| NlaIII | CATG | 1 cut(s) | 164 |
| NsiI | ATGCAT | 1 cut(s) | 91 |
| PfeI | GAWTC | 1 cut(s) | 157 |
| PsuI | RGATCY | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 77, 93 |
| Sau3AI | GATC | 2 cut(s) | 8, 228 |
| SduI | GDGCHC | 1 cut(s) | 246 |
| SetI | ASST | 7 cut(s) | 77, 99, 138, 146, 152, 196, 251 |
| SfaNI | GCATC | 1 cut(s) | 76 |
| SfcI | CTRYAG | 1 cut(s) | 40 |
| TaaI | ACNGT | 2 cut(s) | 59, 256 |
| TaiI | ACGT | 2 cut(s) | 77, 138 |
| TfiI | GAWTC | 1 cut(s) | 157 |
| Tru1I | TTAA | 2 cut(s) | 77, 93 |
| Tru9I | TTAA | 2 cut(s) | 77, 93 |
| TscAI | CASTG | 1 cut(s) | 188 |
| TspDTI | ATGAA | 2 cut(s) | 149, 225 |
| TspRI | CASTG | 1 cut(s) | 188 |
| VneI | GTGCAC | 1 cut(s) | 242 |
| Zsp2I | ATGCAT | 1 cut(s) | 91 |