Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 8 - 50 | 1.3e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 9 - 54 | 4.1e-12 | PPR repeat family |
| PPR_1 | PF12854 | 36 - 68 | 2.9e-13 | PPR repeat |
| PPR_2 | PF13041 | 40 - 89 | 1.6e-17 | PPR repeat family |
| PPR | PF01535 | 43 - 73 | 5.9e-07 | PPR repeat |
| PPR_long | PF17177 | 46 - 133 | 5.4e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 63 - 123 | 6.3e-14 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 71 - 104 | 5e-13 | PPR repeat |
| PPR_2 | PF13041 | 75 - 124 | 5.1e-20 | PPR repeat family |
| PPR | PF01535 | 78 - 108 | 1e-08 | PPR repeat |
| MRP-S27 | PF10037 | 79 - 141 | 1.2e-08 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 106 - 135 | 4.2e-10 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 139 |
| AgsI | TTSAA | 4 cut(s) | 43, 301, 346, 419 |
| AhlI | ACTAGT | 1 cut(s) | 169 |
| AluBI | AGCT | 3 cut(s) | 190, 287, 295 |
| AluI | AGCT | 3 cut(s) | 190, 287, 295 |
| AoxI | GGCC | 1 cut(s) | 271 |
| ApeKI | GCWGC | 2 cut(s) | 4, 111 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 191 |
| AsuHPI | GGTGA | 2 cut(s) | 322, 331 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 156, 189 |
| BbvI | GCAGC | 1 cut(s) | 98 |
| BccI | CCATC | 3 cut(s) | 91, 149, 373 |
| BciVI | GTATCC | 1 cut(s) | 157 |
| BclI | TGATCA | 1 cut(s) | 204 |
| BcuI | ACTAGT | 1 cut(s) | 169 |
| BfaI | CTAG | 2 cut(s) | 170, 210 |
| BfmI | CTRYAG | 2 cut(s) | 5, 133 |
| BfuI | GTATCC | 1 cut(s) | 157 |
| BisI | GCNGC | 2 cut(s) | 5, 112 |
| BlsI | GCNGC | 2 cut(s) | 6, 113 |
| BmsI | GCATC | 1 cut(s) | 169 |
| Bse1I | ACTGG | 1 cut(s) | 281 |
| Bse3DI | GCAATG | 1 cut(s) | 189 |
| BseGI | GGATG | 1 cut(s) | 384 |
| BseMI | GCAATG | 1 cut(s) | 189 |
| BseMII | CTCAG | 1 cut(s) | 210 |
| BseNI | ACTGG | 1 cut(s) | 281 |
| BseXI | GCAGC | 1 cut(s) | 98 |
| BshFI | GGCC | 1 cut(s) | 273 |
| BsiSI | CCGG | 1 cut(s) | 119 |
| BsnI | GGCC | 1 cut(s) | 273 |
| Bsp143I | GATC | 1 cut(s) | 204 |
| BspANI | GGCC | 1 cut(s) | 273 |
| BspCNI | CTCAG | 1 cut(s) | 209 |
| BspMAI | CTGCAG | 1 cut(s) | 9 |
| BspQI | GCTCTTC | 1 cut(s) | 197 |
| BsrDI | GCAATG | 1 cut(s) | 189 |
| BsrI | ACTGG | 1 cut(s) | 281 |
| BssMI | GATC | 1 cut(s) | 204 |
| Bst4CI | ACNGT | 2 cut(s) | 152, 229 |
| Bst6I | CTCTTC | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 1 cut(s) | 116 |
| BstDEI | CTNAG | 3 cut(s) | 21, 89, 196 |
| BstF5I | GGATG | 1 cut(s) | 384 |
| BstKTI | GATC | 1 cut(s) | 207 |
| BstMBI | GATC | 1 cut(s) | 204 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 270 |
| BstSFI | CTRYAG | 2 cut(s) | 5, 133 |
| BstV1I | GCAGC | 1 cut(s) | 98 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 400 |
| BsuI | GTATCC | 1 cut(s) | 157 |
| BsuRI | GGCC | 1 cut(s) | 273 |
| BtsCI | GGATG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 274 |
| Cac8I | GCNNGC | 1 cut(s) | 116 |
| Csp6I | GTAC | 1 cut(s) | 138 |
| CviAII | CATG | 1 cut(s) | 67 |
| CviJI | RGCY | 9 cut(s) | 25, 60, 111, 118, 190, 273, 287, 295, 392 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 60, 111, 118, 190, 273, 287, 295, 392 |
| CviQI | GTAC | 1 cut(s) | 138 |
| DdeI | CTNAG | 3 cut(s) | 21, 89, 196 |
| DpnI | GATC | 1 cut(s) | 206 |
| DpnII | GATC | 1 cut(s) | 204 |
| Eam1104I | CTCTTC | 1 cut(s) | 197 |
| EarI | CTCTTC | 1 cut(s) | 197 |
| FaeI | CATG | 1 cut(s) | 70 |
| FaiI | YATR | 4 cut(s) | 68, 125, 135, 269 |
| FatI | CATG | 1 cut(s) | 66 |
| FbaI | TGATCA | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 112 |
| FokI | GGATG | 1 cut(s) | 391 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 112 |
| FspBI | CTAG | 2 cut(s) | 170, 210 |
| GluI | GCNGC | 2 cut(s) | 5, 112 |
| HaeIII | GGCC | 1 cut(s) | 273 |
| HapII | CCGG | 1 cut(s) | 119 |
| Hin1II | CATG | 1 cut(s) | 70 |
| HinfI | GANTC | 3 cut(s) | 250, 258, 415 |
| HpaII | CCGG | 1 cut(s) | 119 |
| HphI | GGTGA | 2 cut(s) | 322, 331 |
| Hpy188I | TCNGA | 1 cut(s) | 199 |
| HpyAV | CCTTC | 2 cut(s) | 352, 368 |
| HpyCH4III | ACNGT | 2 cut(s) | 152, 229 |
| HpyCH4IV | ACGT | 1 cut(s) | 362 |
| HpyCH4V | TGCA | 5 cut(s) | 7, 66, 159, 182, 264 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 270 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 89, 196 |
| HpySE526I | ACGT | 1 cut(s) | 362 |
| Hsp92II | CATG | 1 cut(s) | 70 |
| Ksp22I | TGATCA | 1 cut(s) | 204 |
| Kzo9I | GATC | 1 cut(s) | 204 |
| LguI | GCTCTTC | 1 cut(s) | 197 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| LpnPI | CCDG | 2 cut(s) | 132, 262 |
| Lsp1109I | GCAGC | 1 cut(s) | 98 |
| LweI | GCATC | 1 cut(s) | 169 |
| MaeI | CTAG | 2 cut(s) | 170, 210 |
| MaeII | ACGT | 1 cut(s) | 362 |
| MaeIII | GTNAC | 3 cut(s) | 34, 232, 337 |
| MalI | GATC | 1 cut(s) | 206 |
| MboI | GATC | 1 cut(s) | 204 |
| MboII | GAAGA | 3 cut(s) | 106, 113, 184 |
| MlyI | GAGTC | 1 cut(s) | 267 |
| MmeI | TCCRAC | 1 cut(s) | 248 |
| MnlI | CCTC | 3 cut(s) | 5, 65, 101 |
| MroXI | GAANNNNTTC | 1 cut(s) | 191 |
| MspI | CCGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 270 |
| NdeII | GATC | 1 cut(s) | 204 |
| NlaIII | CATG | 1 cut(s) | 70 |
| NmuCI | GTSAC | 1 cut(s) | 337 |
| PciSI | GCTCTTC | 1 cut(s) | 197 |
| PdmI | GAANNNNTTC | 1 cut(s) | 191 |
| PfeI | GAWTC | 2 cut(s) | 250, 415 |
| PkrI | GCNGC | 2 cut(s) | 6, 113 |
| PleI | GAGTC | 1 cut(s) | 266 |
| PpsI | GAGTC | 1 cut(s) | 266 |
| PstI | CTGCAG | 1 cut(s) | 9 |
| RsaI | GTAC | 1 cut(s) | 139 |
| RsaNI | GTAC | 1 cut(s) | 138 |
| SapI | GCTCTTC | 1 cut(s) | 197 |
| SatI | GCNGC | 2 cut(s) | 5, 112 |
| Sau3AI | GATC | 1 cut(s) | 204 |
| SchI | GAGTC | 1 cut(s) | 267 |
| SetI | ASST | 7 cut(s) | 16, 192, 289, 297, 322, 344, 365 |
| SfaNI | GCATC | 1 cut(s) | 169 |
| SfcI | CTRYAG | 2 cut(s) | 5, 133 |
| SpeI | ACTAGT | 1 cut(s) | 169 |
| SspMI | CTAG | 2 cut(s) | 170, 210 |
| TaaI | ACNGT | 2 cut(s) | 152, 229 |
| TaiI | ACGT | 1 cut(s) | 365 |
| TfiI | GAWTC | 2 cut(s) | 250, 415 |
| TscAI | CASTG | 1 cut(s) | 281 |
| TseFI | GTSAC | 1 cut(s) | 337 |
| TseI | GCWGC | 2 cut(s) | 4, 111 |
| Tsp45I | GTSAC | 1 cut(s) | 337 |
| TspDTI | ATGAA | 2 cut(s) | 200, 318 |
| TspGWI | ACGGA | 1 cut(s) | 270 |
| TspRI | CASTG | 1 cut(s) | 281 |
| XmnI | GAANNNNTTC | 1 cut(s) | 191 |
| XspI | CTAG | 2 cut(s) | 170, 210 |