Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 5 - 61 | 2.2e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 14 - 41 | 1e-07 | PPR repeat |
| PPR_2 | PF13041 | 17 - 64 | 1.2e-11 | PPR repeat family |
| PPR_3 | PF13812 | 46 - 96 | 1.9e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 48 - 80 | 3.5e-12 | PPR repeat |
| PPR_2 | PF13041 | 51 - 86 | 1.8e-08 | PPR repeat family |
| PPR | PF01535 | 55 - 83 | 3.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 89 - 126 | 2.1e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 273 |
| AclWI | GGATC | 2 cut(s) | 51, 410 |
| AfaI | GTAC | 1 cut(s) | 268 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 260 |
| AgsI | TTSAA | 4 cut(s) | 11, 104, 335, 439 |
| AhlI | ACTAGT | 1 cut(s) | 328 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 372, 404 |
| Alw26I | GTCTC | 1 cut(s) | 302 |
| AlwI | GGATC | 2 cut(s) | 51, 410 |
| AoxI | GGCC | 1 cut(s) | 199 |
| AseI | ATTAAT | 1 cut(s) | 297 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 330 |
| BccI | CCATC | 1 cut(s) | 19 |
| BcoDI | GTCTC | 1 cut(s) | 302 |
| BcuI | ACTAGT | 1 cut(s) | 328 |
| BfaI | CTAG | 1 cut(s) | 329 |
| BfmI | CTRYAG | 3 cut(s) | 314, 360, 402 |
| BglII | AGATCT | 1 cut(s) | 115 |
| BmsI | GCATC | 2 cut(s) | 355, 377 |
| BpuEI | CTTGAG | 1 cut(s) | 212 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 260 |
| Bse3DI | GCAATG | 1 cut(s) | 327 |
| BseGI | GGATG | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 260 |
| BseMI | GCAATG | 1 cut(s) | 327 |
| BshFI | GGCC | 1 cut(s) | 201 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 260 |
| BsmAI | GTCTC | 1 cut(s) | 302 |
| BsnI | GGCC | 1 cut(s) | 201 |
| Bsp143I | GATC | 3 cut(s) | 43, 115, 415 |
| BspANI | GGCC | 1 cut(s) | 201 |
| BspMAI | CTGCAG | 2 cut(s) | 318, 364 |
| BspPI | GGATC | 2 cut(s) | 51, 410 |
| BsrDI | GCAATG | 1 cut(s) | 327 |
| BssMI | GATC | 3 cut(s) | 43, 115, 415 |
| Bst4CI | ACNGT | 1 cut(s) | 376 |
| Bst6I | CTCTTC | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 1 cut(s) | 318 |
| BstF5I | GGATG | 1 cut(s) | 168 |
| BstKTI | GATC | 3 cut(s) | 46, 118, 418 |
| BstMAI | GTCTC | 1 cut(s) | 302 |
| BstMBI | GATC | 3 cut(s) | 43, 115, 415 |
| BstSFI | CTRYAG | 3 cut(s) | 314, 360, 402 |
| BstX2I | RGATCY | 3 cut(s) | 43, 115, 415 |
| BstYI | RGATCY | 3 cut(s) | 43, 115, 415 |
| BsuRI | GGCC | 1 cut(s) | 201 |
| BtsCI | GGATG | 1 cut(s) | 168 |
| BtsI | GCAGTG | 1 cut(s) | 311 |
| BtsIMutI | CAGTG | 1 cut(s) | 311 |
| Cac8I | GCNNGC | 1 cut(s) | 318 |
| Csp6I | GTAC | 1 cut(s) | 267 |
| CviJI | RGCY | 2 cut(s) | 201, 249 |
| CviKI_1 | RGCY | 2 cut(s) | 201, 249 |
| CviQI | GTAC | 1 cut(s) | 267 |
| DpnI | GATC | 3 cut(s) | 45, 117, 417 |
| DpnII | GATC | 3 cut(s) | 43, 115, 415 |
| Eam1104I | CTCTTC | 1 cut(s) | 125 |
| EarI | CTCTTC | 1 cut(s) | 125 |
| Eco147I | AGGCCT | 1 cut(s) | 201 |
| EcoT22I | ATGCAT | 1 cut(s) | 370 |
| FauNDI | CATATG | 1 cut(s) | 259 |
| FokI | GGATG | 1 cut(s) | 175 |
| FspBI | CTAG | 1 cut(s) | 329 |
| HaeIII | GGCC | 1 cut(s) | 201 |
| HinfI | GANTC | 2 cut(s) | 104, 144 |
| Hpy188III | TCNNGA | 1 cut(s) | 47 |
| HpyAV | CCTTC | 1 cut(s) | 23 |
| HpyCH4III | ACNGT | 1 cut(s) | 376 |
| HpyCH4V | TGCA | 5 cut(s) | 87, 110, 316, 362, 368 |
| Kzo9I | GATC | 3 cut(s) | 43, 115, 415 |
| LpnPI | CCDG | 4 cut(s) | 32, 78, 302, 432 |
| LweI | GCATC | 2 cut(s) | 355, 377 |
| MaeI | CTAG | 1 cut(s) | 329 |
| MalI | GATC | 3 cut(s) | 45, 117, 417 |
| MboI | GATC | 3 cut(s) | 43, 115, 415 |
| MboII | GAAGA | 2 cut(s) | 112, 251 |
| MfeI | CAATTG | 1 cut(s) | 6 |
| MflI | RGATCY | 3 cut(s) | 43, 115, 415 |
| MluCI | AATT | 4 cut(s) | 6, 11, 279, 380 |
| MlyI | GAGTC | 1 cut(s) | 138 |
| MmeI | TCCRAC | 3 cut(s) | 21, 172, 370 |
| MnlI | CCTC | 5 cut(s) | 70, 153, 191, 264, 281 |
| Mph1103I | ATGCAT | 1 cut(s) | 370 |
| MroXI | GAANNNNTTC | 1 cut(s) | 330 |
| MseI | TTAA | 2 cut(s) | 206, 297 |
| MunI | CAATTG | 1 cut(s) | 6 |
| NdeI | CATATG | 1 cut(s) | 259 |
| NdeII | GATC | 3 cut(s) | 43, 115, 415 |
| NsiI | ATGCAT | 1 cut(s) | 370 |
| PceI | AGGCCT | 1 cut(s) | 201 |
| PdmI | GAANNNNTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PleI | GAGTC | 1 cut(s) | 138 |
| PpsI | GAGTC | 1 cut(s) | 138 |
| PshBI | ATTAAT | 1 cut(s) | 297 |
| PsiI | TTATAA | 1 cut(s) | 273 |
| PstI | CTGCAG | 2 cut(s) | 318, 364 |
| PsuI | RGATCY | 3 cut(s) | 43, 115, 415 |
| RsaI | GTAC | 1 cut(s) | 268 |
| RsaNI | GTAC | 1 cut(s) | 267 |
| SaqAI | TTAA | 2 cut(s) | 206, 297 |
| Sau3AI | GATC | 3 cut(s) | 43, 115, 415 |
| SchI | GAGTC | 1 cut(s) | 138 |
| SetI | ASST | 1 cut(s) | 154 |
| SfaNI | GCATC | 2 cut(s) | 355, 377 |
| SfcI | CTRYAG | 3 cut(s) | 314, 360, 402 |
| SgeI | CNNG | 8 cut(s) | 59, 105, 123, 241, 299, 329, 341, 431 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| SpeI | ACTAGT | 1 cut(s) | 328 |
| Sse9I | AATT | 4 cut(s) | 6, 11, 279, 380 |
| SseBI | AGGCCT | 1 cut(s) | 201 |
| SspI | AATATT | 1 cut(s) | 67 |
| SspMI | CTAG | 1 cut(s) | 329 |
| StuI | AGGCCT | 1 cut(s) | 201 |
| TaaI | ACNGT | 1 cut(s) | 376 |
| TaqI | TCGA | 1 cut(s) | 286 |
| TasI | AATT | 4 cut(s) | 6, 11, 279, 380 |
| TatI | WGTACW | 1 cut(s) | 266 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 2 cut(s) | 206, 297 |
| Tru9I | TTAA | 2 cut(s) | 206, 297 |
| TscAI | CASTG | 1 cut(s) | 318 |
| TspDTI | ATGAA | 1 cut(s) | 435 |
| TspRI | CASTG | 1 cut(s) | 318 |
| VspI | ATTAAT | 1 cut(s) | 297 |
| XmnI | GAANNNNTTC | 1 cut(s) | 330 |
| XspI | CTAG | 1 cut(s) | 329 |
| Zsp2I | ATGCAT | 1 cut(s) | 370 |