Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| peroxidase | PF00141 | 5 - 115 | 5.9e-16 | Peroxidase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 384 |
| AciI | CCGC | 2 cut(s) | 231, 438 |
| AclI | AACGTT | 1 cut(s) | 340 |
| AcsI | RAATTY | 3 cut(s) | 373, 451, 460 |
| AfaI | GTAC | 1 cut(s) | 419 |
| AgsI | TTSAA | 5 cut(s) | 25, 156, 268, 373, 379 |
| AluBI | AGCT | 1 cut(s) | 330 |
| AluI | AGCT | 1 cut(s) | 330 |
| Alw26I | GTCTC | 1 cut(s) | 41 |
| Ama87I | CYCGRG | 1 cut(s) | 287 |
| ApeKI | GCWGC | 1 cut(s) | 228 |
| ApoI | RAATTY | 3 cut(s) | 373, 451, 460 |
| AspLEI | GCGC | 1 cut(s) | 385 |
| AspS9I | GGNCC | 1 cut(s) | 400 |
| AsuHPI | GGTGA | 1 cut(s) | 419 |
| AvaI | CYCGRG | 1 cut(s) | 287 |
| AvaII | GGWCC | 1 cut(s) | 400 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 275, 308 |
| BbvI | GCAGC | 1 cut(s) | 240 |
| BccI | CCATC | 1 cut(s) | 188 |
| BciVI | GTATCC | 1 cut(s) | 276 |
| BcoDI | GTCTC | 1 cut(s) | 41 |
| BfuI | GTATCC | 1 cut(s) | 276 |
| BglII | AGATCT | 1 cut(s) | 49 |
| BisI | GCNGC | 2 cut(s) | 229, 439 |
| BlsI | GCNGC | 2 cut(s) | 230, 440 |
| Bme18I | GGWCC | 1 cut(s) | 400 |
| BmeT110I | CYCGRG | 1 cut(s) | 287 |
| BmgT120I | GGNCC | 1 cut(s) | 400 |
| BmiI | GGNNCC | 2 cut(s) | 202, 236 |
| BmsI | GCATC | 2 cut(s) | 235, 304 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| BsaI | GGTCTC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 1 cut(s) | 403 |
| BsaWI | WCCGGW | 1 cut(s) | 163 |
| BseDI | CCNNGG | 1 cut(s) | 403 |
| BseXI | GCAGC | 1 cut(s) | 240 |
| BsiHKCI | CYCGRG | 1 cut(s) | 287 |
| BsiSI | CCGG | 1 cut(s) | 164 |
| BslFI | GGGAC | 1 cut(s) | 146 |
| BsmAI | GTCTC | 1 cut(s) | 41 |
| BsmFI | GGGAC | 1 cut(s) | 146 |
| Bso31I | GGTCTC | 1 cut(s) | 41 |
| BsoBI | CYCGRG | 1 cut(s) | 287 |
| Bsp143I | GATC | 2 cut(s) | 49, 295 |
| Bsp19I | CCATGG | 1 cut(s) | 403 |
| BspACI | CCGC | 2 cut(s) | 231, 438 |
| BspLI | GGNNCC | 2 cut(s) | 202, 236 |
| BspTNI | GGTCTC | 1 cut(s) | 41 |
| BssECI | CCNNGG | 1 cut(s) | 403 |
| BssMI | GATC | 2 cut(s) | 49, 295 |
| BssT1I | CCWWGG | 1 cut(s) | 403 |
| BstDSI | CCRYGG | 1 cut(s) | 403 |
| BstHHI | GCGC | 1 cut(s) | 385 |
| BstKTI | GATC | 2 cut(s) | 52, 298 |
| BstMAI | GTCTC | 1 cut(s) | 41 |
| BstMBI | GATC | 2 cut(s) | 49, 295 |
| BstV1I | GCAGC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 1 cut(s) | 49 |
| BstYI | RGATCY | 1 cut(s) | 49 |
| BsuI | GTATCC | 1 cut(s) | 276 |
| BtgI | CCRYGG | 1 cut(s) | 403 |
| BtsI | GCAGTG | 1 cut(s) | 36 |
| BtsIMutI | CAGTG | 1 cut(s) | 36 |
| CfoI | GCGC | 1 cut(s) | 385 |
| Cfr13I | GGNCC | 1 cut(s) | 400 |
| Csp6I | GTAC | 1 cut(s) | 418 |
| CviAII | CATG | 2 cut(s) | 118, 404 |
| CviJI | RGCY | 3 cut(s) | 203, 330, 360 |
| CviKI_1 | RGCY | 3 cut(s) | 203, 330, 360 |
| CviQI | GTAC | 1 cut(s) | 418 |
| DpnI | GATC | 2 cut(s) | 51, 297 |
| DpnII | GATC | 2 cut(s) | 49, 295 |
| DraI | TTTAAA | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 1 cut(s) | 403 |
| Eco31I | GGTCTC | 1 cut(s) | 41 |
| Eco47I | GGWCC | 1 cut(s) | 400 |
| Eco88I | CYCGRG | 1 cut(s) | 287 |
| EcoT14I | CCWWGG | 1 cut(s) | 403 |
| ErhI | CCWWGG | 1 cut(s) | 403 |
| FaeI | CATG | 2 cut(s) | 121, 407 |
| FaiI | YATR | 6 cut(s) | 75, 77, 119, 149, 307, 405 |
| FaqI | GGGAC | 1 cut(s) | 146 |
| FatI | CATG | 2 cut(s) | 117, 403 |
| FauI | CCCGC | 1 cut(s) | 224 |
| FauNDI | CATATG | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 2 cut(s) | 229, 439 |
| Fsp4HI | GCNGC | 2 cut(s) | 229, 439 |
| FspAI | RTGCGCAY | 1 cut(s) | 384 |
| FspI | TGCGCA | 1 cut(s) | 384 |
| GlaI | GCGC | 1 cut(s) | 384 |
| GluI | GCNGC | 2 cut(s) | 229, 439 |
| HapII | CCGG | 1 cut(s) | 164 |
| HhaI | GCGC | 1 cut(s) | 385 |
| Hin1II | CATG | 2 cut(s) | 121, 407 |
| Hin6I | GCGC | 1 cut(s) | 383 |
| HinP1I | GCGC | 1 cut(s) | 383 |
| HindIII | AAGCTT | 1 cut(s) | 328 |
| HinfI | GANTC | 4 cut(s) | 79, 121, 134, 290 |
| HpaII | CCGG | 1 cut(s) | 164 |
| HphI | GGTGA | 1 cut(s) | 419 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 2 cut(s) | 295, 356 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 83 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| HpyAV | CCTTC | 1 cut(s) | 391 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyCH4V | TGCA | 2 cut(s) | 160, 471 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| Hsp92II | CATG | 2 cut(s) | 121, 407 |
| HspAI | GCGC | 1 cut(s) | 383 |
| Kzo9I | GATC | 2 cut(s) | 49, 295 |
| LmnI | GCTCC | 1 cut(s) | 200 |
| LpnPI | CCDG | 3 cut(s) | 96, 115, 177 |
| Lsp1109I | GCAGC | 1 cut(s) | 240 |
| LweI | GCATC | 2 cut(s) | 235, 304 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MaeIII | GTNAC | 2 cut(s) | 55, 174 |
| MalI | GATC | 2 cut(s) | 51, 297 |
| MboI | GATC | 2 cut(s) | 49, 295 |
| MboII | GAAGA | 2 cut(s) | 280, 422 |
| MfeI | CAATTG | 1 cut(s) | 421 |
| MflI | RGATCY | 1 cut(s) | 49 |
| MluCI | AATT | 6 cut(s) | 5, 373, 421, 451, 460, 472 |
| MlyI | GAGTC | 4 cut(s) | 88, 128, 130, 299 |
| MmeI | TCCRAC | 1 cut(s) | 361 |
| MnlI | CCTC | 3 cut(s) | 114, 328, 350 |
| MseI | TTAA | 2 cut(s) | 429, 475 |
| MspA1I | CMGCKG | 1 cut(s) | 231 |
| MspI | CCGG | 1 cut(s) | 164 |
| MunI | CAATTG | 1 cut(s) | 421 |
| NcoI | CCATGG | 1 cut(s) | 403 |
| NdeI | CATATG | 1 cut(s) | 75 |
| NdeII | GATC | 2 cut(s) | 49, 295 |
| NlaIII | CATG | 2 cut(s) | 121, 407 |
| NlaIV | GGNNCC | 2 cut(s) | 202, 236 |
| NmuCI | GTSAC | 2 cut(s) | 55, 174 |
| NsbI | TGCGCA | 1 cut(s) | 384 |
| PaeR7I | CTCGAG | 1 cut(s) | 287 |
| PkrI | GCNGC | 2 cut(s) | 230, 440 |
| PleI | GAGTC | 4 cut(s) | 87, 128, 129, 298 |
| PpsI | GAGTC | 4 cut(s) | 87, 128, 129, 298 |
| Psp1406I | AACGTT | 1 cut(s) | 340 |
| PspN4I | GGNNCC | 2 cut(s) | 202, 236 |
| PspPI | GGNCC | 1 cut(s) | 400 |
| PspXI | VCTCGAGB | 1 cut(s) | 287 |
| PsuI | RGATCY | 1 cut(s) | 49 |
| RsaI | GTAC | 1 cut(s) | 419 |
| RsaNI | GTAC | 1 cut(s) | 418 |
| SaqAI | TTAA | 2 cut(s) | 429, 475 |
| SatI | GCNGC | 2 cut(s) | 229, 439 |
| Sau3AI | GATC | 2 cut(s) | 49, 295 |
| Sau96I | GGNCC | 1 cut(s) | 400 |
| SchI | GAGTC | 4 cut(s) | 88, 128, 130, 299 |
| SetI | ASST | 3 cut(s) | 332, 343, 402 |
| SfaNI | GCATC | 2 cut(s) | 235, 304 |
| Sfr274I | CTCGAG | 1 cut(s) | 287 |
| SinI | GGWCC | 1 cut(s) | 400 |
| SlaI | CTCGAG | 1 cut(s) | 287 |
| SmlI | CTYRAG | 2 cut(s) | 45, 287 |
| SmoI | CTYRAG | 2 cut(s) | 45, 287 |
| Sse9I | AATT | 6 cut(s) | 5, 373, 421, 451, 460, 472 |
| SsiI | CCGC | 2 cut(s) | 231, 438 |
| SspI | AATATT | 1 cut(s) | 97 |
| StyI | CCWWGG | 1 cut(s) | 403 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TasI | AATT | 6 cut(s) | 5, 373, 421, 451, 460, 472 |
| TatI | WGTACW | 1 cut(s) | 417 |
| TauI | GCSGC | 1 cut(s) | 441 |
| Tru1I | TTAA | 2 cut(s) | 429, 475 |
| Tru9I | TTAA | 2 cut(s) | 429, 475 |
| TscAI | CASTG | 1 cut(s) | 36 |
| TseFI | GTSAC | 2 cut(s) | 55, 174 |
| TseI | GCWGC | 1 cut(s) | 228 |
| Tsp45I | GTSAC | 2 cut(s) | 55, 174 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 36 |
| VpaK11BI | GGWCC | 1 cut(s) | 400 |
| XapI | RAATTY | 3 cut(s) | 373, 451, 460 |
| XhoI | CTCGAG | 1 cut(s) | 287 |