endonuclease activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 6 - 36 | 4.4e-13 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.5e-20 | PPR repeat family |
| PPR_3 | PF13812 | 8 - 55 | 6.8e-07 | Pentatricopeptide repeat domain |
| PPR | PF01535 | 11 - 41 | 2.9e-09 | PPR repeat |
| PPR_1 | PF12854 | 39 - 71 | 1e-14 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 2.8e-19 | PPR repeat family |
| PPR | PF01535 | 46 - 76 | 1.2e-09 | PPR repeat |
| PPR_long | PF17177 | 61 - 145 | 4.4e-11 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 67 - 122 | 5.4e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 74 - 106 | 8e-14 | PPR repeat |
| TPR_24 | PF23276 | 74 - 145 | 2.3e-06 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 79 - 126 | 5e-16 | PPR repeat family |
| PPR | PF01535 | 81 - 111 | 1.6e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 659 |
| AccIII | TCCGGA | 1 cut(s) | 490 |
| AciI | CCGC | 1 cut(s) | 657 |
| AclWI | GGATC | 3 cut(s) | 441, 789, 807 |
| AcoI | YGGCCR | 1 cut(s) | 729 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 112 |
| AgsI | TTSAA | 2 cut(s) | 34, 266 |
| Alw26I | GTCTC | 2 cut(s) | 28, 340 |
| AlwI | GGATC | 3 cut(s) | 441, 789, 807 |
| Aor13HI | TCCGGA | 1 cut(s) | 490 |
| AoxI | GGCC | 1 cut(s) | 729 |
| ApeKI | GCWGC | 1 cut(s) | 483 |
| AspLEI | GCGC | 1 cut(s) | 456 |
| AsuHPI | GGTGA | 1 cut(s) | 656 |
| AsuNHI | GCTAGC | 1 cut(s) | 473 |
| BbvI | GCAGC | 1 cut(s) | 470 |
| BccI | CCATC | 5 cut(s) | 43, 101, 222, 410, 463 |
| BclI | TGATCA | 1 cut(s) | 306 |
| BcoDI | GTCTC | 2 cut(s) | 28, 340 |
| BfaI | CTAG | 1 cut(s) | 474 |
| BfmI | CTRYAG | 1 cut(s) | 785 |
| BisI | GCNGC | 2 cut(s) | 484, 657 |
| BlsI | GCNGC | 2 cut(s) | 485, 658 |
| BmiI | GGNNCC | 2 cut(s) | 122, 699 |
| BmsI | GCATC | 6 cut(s) | 226, 354, 436, 564, 586, 643 |
| BmtI | GCTAGC | 1 cut(s) | 477 |
| BpmI | CTGGAG | 1 cut(s) | 684 |
| Bpu10I | CCTNAGC | 1 cut(s) | 41 |
| BpuEI | CTTGAG | 1 cut(s) | 645 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaI | GGTCTC | 1 cut(s) | 340 |
| BsaJI | CCNNGG | 1 cut(s) | 339 |
| BsaWI | WCCGGW | 1 cut(s) | 490 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 112 |
| Bse118I | RCCGGY | 1 cut(s) | 731 |
| BseAI | TCCGGA | 1 cut(s) | 490 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 1 cut(s) | 339 |
| BseGI | GGATG | 2 cut(s) | 499, 820 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseXI | GCAGC | 1 cut(s) | 470 |
| BshFI | GGCC | 1 cut(s) | 731 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiSI | CCGG | 2 cut(s) | 491, 732 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsmAI | GTCTC | 2 cut(s) | 28, 340 |
| BsnI | GGCC | 1 cut(s) | 731 |
| Bso31I | GGTCTC | 1 cut(s) | 340 |
| Bsp13I | TCCGGA | 1 cut(s) | 490 |
| Bsp143I | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| BspACI | CCGC | 1 cut(s) | 657 |
| BspANI | GGCC | 1 cut(s) | 731 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspEI | TCCGGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 2 cut(s) | 122, 699 |
| BspMAI | CTGCAG | 1 cut(s) | 789 |
| BspOI | GCTAGC | 1 cut(s) | 477 |
| BspPI | GGATC | 3 cut(s) | 441, 789, 807 |
| BspTNI | GGTCTC | 1 cut(s) | 340 |
| BsrBI | CCGCTC | 1 cut(s) | 659 |
| BsrFI | RCCGGY | 1 cut(s) | 731 |
| BssAI | RCCGGY | 1 cut(s) | 731 |
| BssECI | CCNNGG | 1 cut(s) | 339 |
| BssMI | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| Bst4CI | ACNGT | 2 cut(s) | 604, 722 |
| Bst6I | CTCTTC | 2 cut(s) | 577, 785 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 483 |
| BstC8I | GCNNGC | 4 cut(s) | 428, 475, 729, 733 |
| BstDEI | CTNAG | 1 cut(s) | 41 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 110 |
| BstF5I | GGATG | 2 cut(s) | 499, 820 |
| BstHHI | GCGC | 1 cut(s) | 456 |
| BstKTI | GATC | 7 cut(s) | 103, 309, 414, 436, 649, 784, 802 |
| BstMAI | GTCTC | 2 cut(s) | 28, 340 |
| BstMBI | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 483 |
| BstNSI | RCATGY | 1 cut(s) | 460 |
| BstSFI | CTRYAG | 1 cut(s) | 785 |
| BstV1I | GCAGC | 1 cut(s) | 470 |
| BstX2I | RGATCY | 1 cut(s) | 781 |
| BstYI | RGATCY | 1 cut(s) | 781 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuRI | GGCC | 1 cut(s) | 731 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtsCI | GGATG | 2 cut(s) | 499, 820 |
| BtsIMutI | CAGTG | 3 cut(s) | 147, 304, 718 |
| Cac8I | GCNNGC | 4 cut(s) | 428, 475, 729, 733 |
| CfoI | GCGC | 1 cut(s) | 456 |
| Cfr10I | RCCGGY | 1 cut(s) | 731 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 1 cut(s) | 242 |
| CviAII | CATG | 3 cut(s) | 158, 457, 626 |
| DdeI | CTNAG | 1 cut(s) | 41 |
| DpnI | GATC | 7 cut(s) | 102, 308, 413, 435, 648, 783, 801 |
| DpnII | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| EaeI | YGGCCR | 1 cut(s) | 729 |
| Eam1104I | CTCTTC | 2 cut(s) | 577, 785 |
| EarI | CTCTTC | 2 cut(s) | 577, 785 |
| Eco31I | GGTCTC | 1 cut(s) | 340 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 110 |
| EcoT22I | ATGCAT | 3 cut(s) | 159, 316, 579 |
| FaeI | CATG | 3 cut(s) | 161, 460, 629 |
| FatI | CATG | 3 cut(s) | 157, 456, 625 |
| FauNDI | CATATG | 1 cut(s) | 258 |
| FbaI | TGATCA | 1 cut(s) | 306 |
| Fnu4HI | GCNGC | 2 cut(s) | 484, 657 |
| FokI | GGATG | 1 cut(s) | 506 |
| Fsp4HI | GCNGC | 2 cut(s) | 484, 657 |
| FspBI | CTAG | 1 cut(s) | 474 |
| GlaI | GCGC | 1 cut(s) | 455 |
| GluI | GCNGC | 2 cut(s) | 484, 657 |
| GsuI | CTGGAG | 1 cut(s) | 684 |
| HaeIII | GGCC | 1 cut(s) | 731 |
| HapII | CCGG | 2 cut(s) | 491, 732 |
| HgaI | GACGC | 1 cut(s) | 242 |
| HhaI | GCGC | 1 cut(s) | 456 |
| Hin1II | CATG | 3 cut(s) | 161, 460, 629 |
| Hin6I | GCGC | 1 cut(s) | 454 |
| HinP1I | GCGC | 1 cut(s) | 454 |
| HincII | GTYRAC | 1 cut(s) | 547 |
| HindII | GTYRAC | 1 cut(s) | 547 |
| HinfI | GANTC | 4 cut(s) | 34, 206, 464, 622 |
| HpaII | CCGG | 2 cut(s) | 491, 732 |
| HphI | GGTGA | 1 cut(s) | 656 |
| Hpy166II | GTNNAC | 1 cut(s) | 547 |
| Hpy188I | TCNGA | 1 cut(s) | 340 |
| Hpy188III | TCNNGA | 5 cut(s) | 281, 491, 650, 662, 701 |
| Hpy8I | GTNNAC | 1 cut(s) | 547 |
| HpyAV | CCTTC | 1 cut(s) | 677 |
| HpyCH4III | ACNGT | 2 cut(s) | 604, 722 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 483 |
| HpyF3I | CTNAG | 1 cut(s) | 41 |
| Hsp92II | CATG | 3 cut(s) | 161, 460, 629 |
| HspAI | GCGC | 1 cut(s) | 454 |
| Kpn2I | TCCGGA | 1 cut(s) | 490 |
| KroI | GCCGGC | 1 cut(s) | 731 |
| KroNI | GCCGGC | 1 cut(s) | 733 |
| Ksp22I | TGATCA | 1 cut(s) | 306 |
| Kzo9I | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| LmnI | GCTCC | 1 cut(s) | 703 |
| LpnPI | CCDG | 7 cut(s) | 207, 294, 416, 504, 713, 714, 745 |
| Lsp1109I | GCAGC | 1 cut(s) | 470 |
| LweI | GCATC | 6 cut(s) | 226, 354, 436, 564, 586, 643 |
| MaeI | CTAG | 1 cut(s) | 474 |
| MaeIII | GTNAC | 4 cut(s) | 215, 289, 499, 604 |
| MalI | GATC | 7 cut(s) | 102, 308, 413, 435, 648, 783, 801 |
| MbiI | CCGCTC | 1 cut(s) | 659 |
| MboI | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| MboII | GAAGA | 4 cut(s) | 58, 359, 594, 802 |
| MfeI | CAATTG | 2 cut(s) | 193, 245 |
| MflI | RGATCY | 1 cut(s) | 781 |
| MluCI | AATT | 3 cut(s) | 193, 245, 752 |
| MlyI | GAGTC | 1 cut(s) | 200 |
| MmeI | TCCRAC | 1 cut(s) | 353 |
| MnlI | CCTC | 5 cut(s) | 334, 578, 772, 790, 805 |
| Mph1103I | ATGCAT | 3 cut(s) | 159, 316, 579 |
| MroI | TCCGGA | 1 cut(s) | 490 |
| MroNI | GCCGGC | 1 cut(s) | 731 |
| MslI | CAYNNNNRTG | 2 cut(s) | 129, 152 |
| MspI | CCGG | 2 cut(s) | 491, 732 |
| MunI | CAATTG | 2 cut(s) | 193, 245 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 483 |
| NaeI | GCCGGC | 1 cut(s) | 733 |
| NdeI | CATATG | 1 cut(s) | 258 |
| NdeII | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| NgoMIV | GCCGGC | 1 cut(s) | 731 |
| NheI | GCTAGC | 1 cut(s) | 473 |
| NlaIII | CATG | 3 cut(s) | 161, 460, 629 |
| NlaIV | GGNNCC | 2 cut(s) | 122, 699 |
| NmeAIII | GCCGAG | 1 cut(s) | 5 |
| NmuCI | GTSAC | 2 cut(s) | 215, 499 |
| NsiI | ATGCAT | 3 cut(s) | 159, 316, 579 |
| NspI | RCATGY | 1 cut(s) | 460 |
| PdiI | GCCGGC | 1 cut(s) | 733 |
| PfeI | GAWTC | 3 cut(s) | 34, 464, 622 |
| PkrI | GCNGC | 2 cut(s) | 485, 658 |
| PleI | GAGTC | 1 cut(s) | 200 |
| PpsI | GAGTC | 1 cut(s) | 200 |
| PspN4I | GGNNCC | 2 cut(s) | 122, 699 |
| PstI | CTGCAG | 1 cut(s) | 789 |
| PsuI | RGATCY | 1 cut(s) | 781 |
| RseI | CAYNNNNRTG | 2 cut(s) | 129, 152 |
| SatI | GCNGC | 2 cut(s) | 484, 657 |
| Sau3AI | GATC | 7 cut(s) | 100, 306, 411, 433, 646, 781, 799 |
| SchI | GAGTC | 1 cut(s) | 200 |
| SetI | ASST | 4 cut(s) | 144, 169, 336, 669 |
| SfaNI | GCATC | 6 cut(s) | 226, 354, 436, 564, 586, 643 |
| SfcI | CTRYAG | 1 cut(s) | 785 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 129, 152 |
| SmlI | CTYRAG | 1 cut(s) | 660 |
| SmoI | CTYRAG | 1 cut(s) | 660 |
| Sse9I | AATT | 3 cut(s) | 193, 245, 752 |
| SsiI | CCGC | 1 cut(s) | 657 |
| SspI | AATATT | 1 cut(s) | 774 |
| SspMI | CTAG | 1 cut(s) | 474 |
| TaaI | ACNGT | 2 cut(s) | 604, 722 |
| TaqI | TCGA | 4 cut(s) | 414, 467, 580, 651 |
| TasI | AATT | 3 cut(s) | 193, 245, 752 |
| TauI | GCSGC | 1 cut(s) | 659 |
| TfiI | GAWTC | 3 cut(s) | 34, 464, 622 |
| TscAI | CASTG | 3 cut(s) | 154, 304, 725 |
| TseFI | GTSAC | 2 cut(s) | 215, 499 |
| TseI | GCWGC | 1 cut(s) | 483 |
| Tsp45I | GTSAC | 2 cut(s) | 215, 499 |
| TspDTI | ATGAA | 1 cut(s) | 614 |
| TspRI | CASTG | 3 cut(s) | 154, 304, 725 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 110 |
| XceI | RCATGY | 1 cut(s) | 460 |
| XspI | CTAG | 1 cut(s) | 474 |
| Zsp2I | ATGCAT | 3 cut(s) | 159, 316, 579 |