Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 4 - 36 | 1.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 5.3e-11 | PPR repeat family |
| PPR_3 | PF13812 | 32 - 74 | 8e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 40 - 71 | 1.7e-11 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 3.6e-17 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 5.2e-09 | PPR repeat |
| PPR_1 | PF12854 | 74 - 106 | 2e-09 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 1e-16 | PPR repeat family |
| PPR | PF01535 | 82 - 108 | 8.9e-08 | PPR repeat |
| PPR_1 | PF12854 | 110 - 141 | 3.3e-14 | PPR repeat |
| PPR_2 | PF13041 | 113 - 162 | 1.9e-16 | PPR repeat family |
| TPR_24 | PF23276 | 115 - 208 | 3.2e-08 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 116 - 145 | 6.7e-09 | PPR repeat |
| PPR_1 | PF12854 | 145 - 177 | 1.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 156 - 197 | 2.1e-07 | PPR repeat family |
| PPR_2 | PF13041 | 184 - 227 | 1.9e-11 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 144 |
| AciI | CCGC | 3 cut(s) | 172, 383, 609 |
| AcoI | YGGCCR | 1 cut(s) | 433 |
| AgsI | TTSAA | 5 cut(s) | 40, 310, 452, 578, 605 |
| AhlI | ACTAGT | 1 cut(s) | 331 |
| AluBI | AGCT | 2 cut(s) | 439, 593 |
| AluI | AGCT | 2 cut(s) | 439, 593 |
| Alw26I | GTCTC | 1 cut(s) | 382 |
| AoxI | GGCC | 3 cut(s) | 433, 475, 702 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 25 |
| BalI | TGGCCA | 1 cut(s) | 435 |
| BanII | GRGCYC | 1 cut(s) | 227 |
| BccI | CCATC | 3 cut(s) | 67, 467, 520 |
| BceAI | ACGGC | 1 cut(s) | 519 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 390, 424 |
| BcoDI | GTCTC | 1 cut(s) | 382 |
| BcuI | ACTAGT | 1 cut(s) | 331 |
| BfaI | CTAG | 2 cut(s) | 332, 594 |
| BglII | AGATCT | 1 cut(s) | 616 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmsI | GCATC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 1 cut(s) | 228 |
| BseDI | CCNNGG | 1 cut(s) | 228 |
| BseGI | GGATG | 1 cut(s) | 78 |
| BseMII | CTCAG | 1 cut(s) | 408 |
| BshFI | GGCC | 3 cut(s) | 435, 477, 704 |
| BsmAI | GTCTC | 1 cut(s) | 382 |
| BsnI | GGCC | 3 cut(s) | 435, 477, 704 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp143I | GATC | 2 cut(s) | 205, 616 |
| Bsp19I | CCATGG | 1 cut(s) | 228 |
| BspACI | CCGC | 3 cut(s) | 172, 383, 609 |
| BspANI | GGCC | 3 cut(s) | 435, 477, 704 |
| BspCNI | CTCAG | 1 cut(s) | 409 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BssECI | CCNNGG | 1 cut(s) | 228 |
| BssMI | GATC | 2 cut(s) | 205, 616 |
| BssT1I | CCWWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 3 cut(s) | 161, 167, 371 |
| Bst6I | CTCTTC | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 2 cut(s) | 84, 437 |
| BstDEI | CTNAG | 4 cut(s) | 113, 417, 425, 518 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstF5I | GGATG | 1 cut(s) | 78 |
| BstKTI | GATC | 2 cut(s) | 208, 619 |
| BstMAI | GTCTC | 1 cut(s) | 382 |
| BstMBI | GATC | 2 cut(s) | 205, 616 |
| BstX2I | RGATCY | 1 cut(s) | 616 |
| BstYI | RGATCY | 1 cut(s) | 616 |
| BsuRI | GGCC | 3 cut(s) | 435, 477, 704 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtsCI | GGATG | 1 cut(s) | 78 |
| Cac8I | GCNNGC | 2 cut(s) | 84, 437 |
| CviAII | CATG | 3 cut(s) | 103, 229, 700 |
| DdeI | CTNAG | 4 cut(s) | 113, 417, 425, 518 |
| DpnI | GATC | 2 cut(s) | 207, 618 |
| DpnII | GATC | 2 cut(s) | 205, 616 |
| EaeI | YGGCCR | 1 cut(s) | 433 |
| Eam1104I | CTCTTC | 1 cut(s) | 626 |
| EarI | CTCTTC | 1 cut(s) | 626 |
| Eco130I | CCWWGG | 1 cut(s) | 228 |
| Eco24I | GRGCYC | 1 cut(s) | 227 |
| EcoT14I | CCWWGG | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 228 |
| FaeI | CATG | 3 cut(s) | 106, 232, 703 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 531, 563 |
| FatI | CATG | 3 cut(s) | 102, 228, 699 |
| FauI | CCCGC | 2 cut(s) | 165, 376 |
| FokI | GGATG | 1 cut(s) | 85 |
| FriOI | GRGCYC | 1 cut(s) | 227 |
| FspBI | CTAG | 2 cut(s) | 332, 594 |
| HaeIII | GGCC | 3 cut(s) | 435, 477, 704 |
| Hin1II | CATG | 3 cut(s) | 106, 232, 703 |
| HincII | GTYRAC | 1 cut(s) | 100 |
| HindII | GTYRAC | 1 cut(s) | 100 |
| HinfI | GANTC | 2 cut(s) | 109, 605 |
| HphI | GGTGA | 2 cut(s) | 16, 25 |
| Hpy166II | GTNNAC | 2 cut(s) | 100, 562 |
| Hpy188I | TCNGA | 3 cut(s) | 210, 243, 418 |
| Hpy188III | TCNNGA | 2 cut(s) | 338, 443 |
| Hpy8I | GTNNAC | 2 cut(s) | 100, 562 |
| HpyAV | CCTTC | 4 cut(s) | 46, 62, 277, 572 |
| HpyCH4III | ACNGT | 3 cut(s) | 161, 167, 371 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 273, 378, 588 |
| HpyF3I | CTNAG | 4 cut(s) | 113, 417, 425, 518 |
| Hsp92II | CATG | 3 cut(s) | 106, 232, 703 |
| Kzo9I | GATC | 2 cut(s) | 205, 616 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 7 cut(s) | 141, 351, 449, 456, 491, 503, 666 |
| LweI | GCATC | 1 cut(s) | 411 |
| MaeI | CTAG | 2 cut(s) | 332, 594 |
| MaeIII | GTNAC | 4 cut(s) | 31, 52, 161, 482 |
| MalI | GATC | 2 cut(s) | 207, 618 |
| MboI | GATC | 2 cut(s) | 205, 616 |
| MboII | GAAGA | 1 cut(s) | 613 |
| MflI | RGATCY | 1 cut(s) | 616 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MlsI | TGGCCA | 1 cut(s) | 435 |
| MluCI | AATT | 3 cut(s) | 345, 512, 600 |
| MluNI | TGGCCA | 1 cut(s) | 435 |
| Mox20I | TGGCCA | 1 cut(s) | 435 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MscI | TGGCCA | 1 cut(s) | 435 |
| MslI | CAYNNNNRTG | 1 cut(s) | 674 |
| Msp20I | TGGCCA | 1 cut(s) | 435 |
| NcoI | CCATGG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 205, 616 |
| NlaIII | CATG | 3 cut(s) | 106, 232, 703 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 2 cut(s) | 109, 605 |
| PflFI | GACNNNGTC | 1 cut(s) | 692 |
| PsiI | TTATAA | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PsuI | RGATCY | 1 cut(s) | 616 |
| PsyI | GACNNNGTC | 1 cut(s) | 692 |
| RseI | CAYNNNNRTG | 1 cut(s) | 674 |
| Sau3AI | GATC | 2 cut(s) | 205, 616 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SetI | ASST | 6 cut(s) | 16, 38, 288, 441, 583, 595 |
| SfaNI | GCATC | 1 cut(s) | 411 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 674 |
| SpeI | ACTAGT | 1 cut(s) | 331 |
| Sse9I | AATT | 3 cut(s) | 345, 512, 600 |
| SsiI | CCGC | 3 cut(s) | 172, 383, 609 |
| SspMI | CTAG | 2 cut(s) | 332, 594 |
| StyI | CCWWGG | 1 cut(s) | 228 |
| TaaI | ACNGT | 3 cut(s) | 161, 167, 371 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TasI | AATT | 3 cut(s) | 345, 512, 600 |
| TfiI | GAWTC | 2 cut(s) | 109, 605 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| Tth111I | GACNNNGTC | 1 cut(s) | 692 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |
| XspI | CTAG | 2 cut(s) | 332, 594 |