Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 48 - 88 | 3.2e-11 | PPR repeat family |
| PPR_1 | PF12854 | 71 - 104 | 8.7e-10 | PPR repeat |
| PPR_2 | PF13041 | 113 - 162 | 1.7e-14 | PPR repeat family |
| PPR_3 | PF13812 | 136 - 193 | 1.9e-06 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 138 - 243 | 3.4e-08 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 145 - 176 | 8.1e-17 | PPR repeat |
| PPR_2 | PF13041 | 148 - 197 | 8.5e-20 | PPR repeat family |
| PPR | PF01535 | 151 - 180 | 3.4e-11 | PPR repeat |
| PPR_1 | PF12854 | 180 - 212 | 4.2e-07 | PPR repeat |
| PPR_1 | PF12854 | 216 - 244 | 5.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 219 - 267 | 6.8e-15 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 459 |
| AciI | CCGC | 1 cut(s) | 488 |
| AclWI | GGATC | 2 cut(s) | 321, 334 |
| AcoI | YGGCCR | 1 cut(s) | 538 |
| AcsI | RAATTY | 1 cut(s) | 408 |
| AfaI | GTAC | 1 cut(s) | 563 |
| AflIII | ACRYGT | 1 cut(s) | 30 |
| AgsI | TTSAA | 7 cut(s) | 115, 209, 221, 415, 683, 710, 818 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 842, 874 |
| AluBI | AGCT | 3 cut(s) | 544, 598, 698 |
| AluI | AGCT | 3 cut(s) | 544, 598, 698 |
| AlwI | GGATC | 2 cut(s) | 321, 334 |
| AoxI | GGCC | 3 cut(s) | 538, 580, 790 |
| ApeKI | GCWGC | 2 cut(s) | 58, 61 |
| ApoI | RAATTY | 1 cut(s) | 408 |
| AseI | ATTAAT | 2 cut(s) | 359, 363 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 438 |
| AspS9I | GGNCC | 2 cut(s) | 106, 790 |
| AvaII | GGWCC | 1 cut(s) | 106 |
| BalI | TGGCCA | 1 cut(s) | 540 |
| BamHI | GGATCC | 1 cut(s) | 326 |
| BbsI | GAAGAC | 1 cut(s) | 718 |
| BbvI | GCAGC | 2 cut(s) | 70, 73 |
| BccI | CCATC | 6 cut(s) | 14, 163, 248, 467, 572, 625 |
| BceAI | ACGGC | 1 cut(s) | 624 |
| BciVI | GTATCC | 1 cut(s) | 76 |
| BfaI | CTAG | 1 cut(s) | 530 |
| BfmI | CTRYAG | 1 cut(s) | 395 |
| BfuI | GTATCC | 1 cut(s) | 76 |
| BisI | GCNGC | 2 cut(s) | 59, 62 |
| BlsI | GCNGC | 2 cut(s) | 60, 63 |
| Bme18I | GGWCC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 790 |
| BmiI | GGNNCC | 1 cut(s) | 328 |
| BmsI | GCATC | 1 cut(s) | 516 |
| BpiI | GAAGAC | 1 cut(s) | 718 |
| BsaJI | CCNNGG | 1 cut(s) | 330 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 20, 50 |
| BseDI | CCNNGG | 1 cut(s) | 330 |
| BseGI | GGATG | 3 cut(s) | 174, 259, 861 |
| BseMII | CTCAG | 1 cut(s) | 513 |
| BseRI | GAGGAG | 2 cut(s) | 28, 285 |
| BseXI | GCAGC | 2 cut(s) | 70, 73 |
| BshFI | GGCC | 3 cut(s) | 540, 582, 792 |
| BsiWI | CGTACG | 1 cut(s) | 561 |
| BsmI | GAATGC | 1 cut(s) | 426 |
| BsnI | GGCC | 3 cut(s) | 540, 582, 792 |
| Bsp143I | GATC | 2 cut(s) | 326, 391 |
| Bsp19I | CCATGG | 1 cut(s) | 330 |
| BspACI | CCGC | 1 cut(s) | 488 |
| BspANI | GGCC | 3 cut(s) | 540, 582, 792 |
| BspCNI | CTCAG | 1 cut(s) | 514 |
| BspLI | GGNNCC | 1 cut(s) | 328 |
| BspMAI | CTGCAG | 1 cut(s) | 399 |
| BspPI | GGATC | 2 cut(s) | 321, 334 |
| BssECI | CCNNGG | 1 cut(s) | 330 |
| BssMI | GATC | 2 cut(s) | 326, 391 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 3 cut(s) | 242, 263, 451 |
| Bst6I | CTCTTC | 2 cut(s) | 62, 116 |
| BstC8I | GCNNGC | 3 cut(s) | 377, 399, 542 |
| BstDEI | CTNAG | 1 cut(s) | 522 |
| BstDSI | CCRYGG | 1 cut(s) | 330 |
| BstF5I | GGATG | 3 cut(s) | 174, 259, 861 |
| BstKTI | GATC | 2 cut(s) | 329, 394 |
| BstMBI | GATC | 2 cut(s) | 326, 391 |
| BstSFI | CTRYAG | 1 cut(s) | 395 |
| BstV1I | GCAGC | 2 cut(s) | 70, 73 |
| BstV2I | GAAGAC | 1 cut(s) | 718 |
| BstX2I | RGATCY | 1 cut(s) | 326 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 190, 646 |
| BstYI | RGATCY | 1 cut(s) | 326 |
| BsuI | GTATCC | 1 cut(s) | 76 |
| BsuRI | GGCC | 3 cut(s) | 540, 582, 792 |
| BtgI | CCRYGG | 1 cut(s) | 330 |
| BtsCI | GGATG | 3 cut(s) | 174, 259, 861 |
| Cac8I | GCNNGC | 3 cut(s) | 377, 399, 542 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 790 |
| CseI | GACGC | 1 cut(s) | 413 |
| Csp6I | GTAC | 1 cut(s) | 562 |
| CviAII | CATG | 3 cut(s) | 331, 430, 803 |
| CviQI | GTAC | 1 cut(s) | 562 |
| DdeI | CTNAG | 1 cut(s) | 522 |
| DpnI | GATC | 2 cut(s) | 328, 393 |
| DpnII | GATC | 2 cut(s) | 326, 391 |
| EaeI | YGGCCR | 1 cut(s) | 538 |
| Eam1104I | CTCTTC | 2 cut(s) | 62, 116 |
| EarI | CTCTTC | 2 cut(s) | 62, 116 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco47I | GGWCC | 1 cut(s) | 106 |
| EcoO109I | RGGNCCY | 1 cut(s) | 790 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 3 cut(s) | 334, 433, 806 |
| FatI | CATG | 3 cut(s) | 330, 429, 802 |
| FauI | CCCGC | 1 cut(s) | 481 |
| Fnu4HI | GCNGC | 2 cut(s) | 59, 62 |
| FokI | GGATG | 3 cut(s) | 181, 266, 868 |
| Fsp4HI | GCNGC | 2 cut(s) | 59, 62 |
| FspBI | CTAG | 1 cut(s) | 530 |
| GluI | GCNGC | 2 cut(s) | 59, 62 |
| HaeIII | GGCC | 3 cut(s) | 540, 582, 792 |
| HgaI | GACGC | 1 cut(s) | 413 |
| Hin1II | CATG | 3 cut(s) | 334, 433, 806 |
| HincII | GTYRAC | 1 cut(s) | 196 |
| HindII | GTYRAC | 1 cut(s) | 196 |
| HinfI | GANTC | 5 cut(s) | 70, 205, 495, 710, 784 |
| Hpy166II | GTNNAC | 2 cut(s) | 196, 667 |
| Hpy188I | TCNGA | 3 cut(s) | 500, 523, 558 |
| Hpy188III | TCNNGA | 1 cut(s) | 443 |
| Hpy8I | GTNNAC | 2 cut(s) | 196, 667 |
| Hpy99I | CGWCG | 1 cut(s) | 429 |
| HpyAV | CCTTC | 3 cut(s) | 52, 158, 677 |
| HpyCH4III | ACNGT | 3 cut(s) | 242, 263, 451 |
| HpyCH4IV | ACGT | 2 cut(s) | 30, 560 |
| HpyCH4V | TGCA | 8 cut(s) | 58, 78, 375, 397, 483, 693, 716, 874 |
| HpyF3I | CTNAG | 1 cut(s) | 522 |
| HpySE526I | ACGT | 2 cut(s) | 30, 560 |
| Hsp92II | CATG | 3 cut(s) | 334, 433, 806 |
| Kzo9I | GATC | 2 cut(s) | 326, 391 |
| LpnPI | CCDG | 7 cut(s) | 383, 456, 554, 596, 684, 745, 773 |
| Lsp1109I | GCAGC | 2 cut(s) | 70, 73 |
| LweI | GCATC | 1 cut(s) | 516 |
| MaeI | CTAG | 1 cut(s) | 530 |
| MaeII | ACGT | 2 cut(s) | 30, 560 |
| MaeIII | GTNAC | 4 cut(s) | 257, 350, 451, 587 |
| MalI | GATC | 2 cut(s) | 328, 393 |
| MboI | GATC | 2 cut(s) | 326, 391 |
| MboII | GAAGA | 3 cut(s) | 79, 103, 718 |
| MflI | RGATCY | 1 cut(s) | 326 |
| MlsI | TGGCCA | 1 cut(s) | 540 |
| MluCI | AATT | 8 cut(s) | 90, 216, 360, 408, 617, 644, 705, 813 |
| MluNI | TGGCCA | 1 cut(s) | 540 |
| MlyI | GAGTC | 1 cut(s) | 79 |
| MnlI | CCTC | 7 cut(s) | 46, 49, 119, 206, 263, 280, 840 |
| Mox20I | TGGCCA | 1 cut(s) | 540 |
| MroXI | GAANNNNTTC | 1 cut(s) | 438 |
| MscI | TGGCCA | 1 cut(s) | 540 |
| MseI | TTAA | 6 cut(s) | 336, 359, 363, 624, 654, 809 |
| MslI | CAYNNNNRTG | 1 cut(s) | 779 |
| Msp20I | TGGCCA | 1 cut(s) | 540 |
| Mva1269I | GAATGC | 1 cut(s) | 426 |
| NcoI | CCATGG | 1 cut(s) | 330 |
| NdeII | GATC | 2 cut(s) | 326, 391 |
| NlaIII | CATG | 3 cut(s) | 334, 433, 806 |
| NlaIV | GGNNCC | 1 cut(s) | 328 |
| PacI | TTAATTAA | 1 cut(s) | 363 |
| PctI | GAATGC | 1 cut(s) | 426 |
| PdmI | GAANNNNTTC | 1 cut(s) | 438 |
| PfeI | GAWTC | 4 cut(s) | 205, 495, 710, 784 |
| Pfl23II | CGTACG | 1 cut(s) | 561 |
| PkrI | GCNGC | 2 cut(s) | 60, 63 |
| PleI | GAGTC | 1 cut(s) | 78 |
| PpsI | GAGTC | 1 cut(s) | 78 |
| PshBI | ATTAAT | 2 cut(s) | 359, 363 |
| PsiI | TTATAA | 1 cut(s) | 459 |
| PspLI | CGTACG | 1 cut(s) | 561 |
| PspN4I | GGNNCC | 1 cut(s) | 328 |
| PspPI | GGNCC | 2 cut(s) | 106, 790 |
| PstI | CTGCAG | 1 cut(s) | 399 |
| PsuI | RGATCY | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 563 |
| RsaNI | GTAC | 1 cut(s) | 562 |
| RseI | CAYNNNNRTG | 1 cut(s) | 779 |
| SaqAI | TTAA | 6 cut(s) | 336, 359, 363, 624, 654, 809 |
| SatI | GCNGC | 2 cut(s) | 59, 62 |
| Sau3AI | GATC | 2 cut(s) | 326, 391 |
| Sau96I | GGNCC | 2 cut(s) | 106, 790 |
| SchI | GAGTC | 1 cut(s) | 79 |
| SetI | ASST | 9 cut(s) | 33, 111, 535, 546, 563, 600, 688, 700, 879 |
| SfaNI | GCATC | 1 cut(s) | 516 |
| SfcI | CTRYAG | 1 cut(s) | 395 |
| SinI | GGWCC | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 779 |
| Sse9I | AATT | 8 cut(s) | 90, 216, 360, 408, 617, 644, 705, 813 |
| SsiI | CCGC | 1 cut(s) | 488 |
| SspMI | CTAG | 1 cut(s) | 530 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 3 cut(s) | 242, 263, 451 |
| TaiI | ACGT | 2 cut(s) | 33, 563 |
| TasI | AATT | 8 cut(s) | 90, 216, 360, 408, 617, 644, 705, 813 |
| TfiI | GAWTC | 4 cut(s) | 205, 495, 710, 784 |
| Tru1I | TTAA | 6 cut(s) | 336, 359, 363, 624, 654, 809 |
| Tru9I | TTAA | 6 cut(s) | 336, 359, 363, 624, 654, 809 |
| TseI | GCWGC | 2 cut(s) | 58, 61 |
| TspDTI | ATGAA | 2 cut(s) | 27, 111 |
| VpaK11BI | GGWCC | 1 cut(s) | 106 |
| VspI | ATTAAT | 2 cut(s) | 359, 363 |
| XapI | RAATTY | 1 cut(s) | 408 |
| XmnI | GAANNNNTTC | 1 cut(s) | 438 |
| XspI | CTAG | 1 cut(s) | 530 |