Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 155 - 186 | 5.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 158 - 205 | 1.7e-10 | PPR repeat family |
| PPR_1 | PF12854 | 189 - 220 | 6.6e-09 | PPR repeat |
| PPR_3 | PF13812 | 190 - 237 | 1.1e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 192 - 241 | 2e-12 | PPR repeat family |
| PPR_long | PF17177 | 211 - 341 | 3.2e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 224 - 255 | 1.1e-12 | PPR repeat |
| PPR_2 | PF13041 | 227 - 276 | 9.6e-19 | PPR repeat family |
| PPR | PF01535 | 230 - 260 | 9e-07 | PPR repeat |
| PPR_3 | PF13812 | 251 - 309 | 8.2e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 258 - 291 | 1.8e-12 | PPR repeat |
| PPR_2 | PF13041 | 262 - 311 | 5e-19 | PPR repeat family |
| PPR | PF01535 | 265 - 295 | 9.2e-08 | PPR repeat |
| PPR_1 | PF12854 | 293 - 325 | 4.8e-09 | PPR repeat |
| PPR_2 | PF13041 | 305 - 345 | 7e-10 | PPR repeat family |
| PPR_1 | PF12854 | 329 - 361 | 9.9e-11 | PPR repeat |
| PPR_2 | PF13041 | 332 - 380 | 1.2e-11 | PPR repeat family |
| PPR | PF01535 | 335 - 363 | 5.7e-07 | PPR repeat |
| PPR_3 | PF13812 | 356 - 413 | 8.4e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 368 - 415 | 1.6e-14 | PPR repeat family |
| PPR | PF01535 | 372 - 398 | 4.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 437 - 481 | 8.4e-15 | PPR repeat family |
| PPR_1 | PF12854 | 438 - 457 | 3.6e-06 | PPR repeat |
| PPR_3 | PF13812 | 460 - 512 | 2e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 463 - 495 | 4.4e-14 | PPR repeat |
| PPR_2 | PF13041 | 468 - 515 | 2.4e-17 | PPR repeat family |
| PPR | PF01535 | 471 - 500 | 1.1e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 348, 567 |
| AatII | GACGTC | 1 cut(s) | 565 |
| AccI | GTMKAC | 1 cut(s) | 1662 |
| AccII | CGCG | 1 cut(s) | 253 |
| AciI | CCGC | 2 cut(s) | 274, 1356 |
| AclI | AACGTT | 1 cut(s) | 1295 |
| AcoI | YGGCCR | 1 cut(s) | 1301 |
| AcuI | CTGAAG | 1 cut(s) | 889 |
| AcyI | GRCGYC | 1 cut(s) | 562 |
| AfaI | GTAC | 3 cut(s) | 1117, 1395, 1415 |
| AhlI | ACTAGT | 1 cut(s) | 730 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1620, 1652 |
| AluBI | AGCT | 6 cut(s) | 638, 848, 1163, 1277, 1340, 1670 |
| AluI | AGCT | 6 cut(s) | 638, 848, 1163, 1277, 1340, 1670 |
| Alw26I | GTCTC | 2 cut(s) | 356, 1567 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 530 |
| AoxI | GGCC | 3 cut(s) | 292, 445, 1301 |
| ApeKI | GCWGC | 3 cut(s) | 80, 536, 635 |
| AseI | ATTAAT | 1 cut(s) | 396 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 243, 364, 752 |
| AspS9I | GGNCC | 2 cut(s) | 292, 1515 |
| AsuHPI | GGTGA | 2 cut(s) | 883, 892 |
| AvaII | GGWCC | 1 cut(s) | 1515 |
| BalI | TGGCCA | 1 cut(s) | 1303 |
| BanII | GRGCYC | 1 cut(s) | 611 |
| BbsI | GAAGAC | 3 cut(s) | 458, 889, 1360 |
| BbvI | GCAGC | 3 cut(s) | 92, 548, 647 |
| BccI | CCATC | 8 cut(s) | 11, 220, 340, 613, 652, 934, 1042, 1502 |
| BceAI | ACGGC | 3 cut(s) | 13, 520, 1663 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1599, 1633 |
| BclI | TGATCA | 1 cut(s) | 736 |
| BcoDI | GTCTC | 2 cut(s) | 356, 1567 |
| BcuI | ACTAGT | 1 cut(s) | 730 |
| BfaI | CTAG | 2 cut(s) | 731, 830 |
| BfmI | CTRYAG | 3 cut(s) | 321, 633, 1608 |
| BisI | GCNGC | 3 cut(s) | 81, 537, 636 |
| BlsI | GCNGC | 3 cut(s) | 82, 538, 637 |
| Bme18I | GGWCC | 1 cut(s) | 1515 |
| BmgT120I | GGNCC | 2 cut(s) | 292, 1515 |
| BpiI | GAAGAC | 3 cut(s) | 458, 889, 1360 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1355, 1387 |
| BpmI | CTGGAG | 2 cut(s) | 768, 1488 |
| BsaHI | GRCGYC | 1 cut(s) | 562 |
| BsaI | GGTCTC | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 3 cut(s) | 502, 1095, 1534 |
| BseDI | CCNNGG | 3 cut(s) | 502, 1095, 1534 |
| BseGI | GGATG | 7 cut(s) | 22, 30, 376, 583, 677, 945, 1307 |
| BseMII | CTCAG | 2 cut(s) | 1299, 1466 |
| BseRI | GAGGAG | 1 cut(s) | 110 |
| BseXI | GCAGC | 3 cut(s) | 92, 548, 647 |
| BseYI | CCCAGC | 2 cut(s) | 1340, 1666 |
| BsgI | GTGCAG | 1 cut(s) | 99 |
| Bsh1236I | CGCG | 1 cut(s) | 253 |
| BshFI | GGCC | 3 cut(s) | 294, 447, 1303 |
| BsiSI | CCGG | 1 cut(s) | 575 |
| BslFI | GGGAC | 2 cut(s) | 464, 573 |
| BsmAI | GTCTC | 2 cut(s) | 356, 1567 |
| BsmFI | GGGAC | 2 cut(s) | 464, 573 |
| BsmI | GAATGC | 1 cut(s) | 223 |
| BsnI | GGCC | 3 cut(s) | 294, 447, 1303 |
| Bso31I | GGTCTC | 1 cut(s) | 356 |
| Bsp1286I | GDGCHC | 1 cut(s) | 611 |
| Bsp143I | GATC | 1 cut(s) | 736 |
| Bsp19I | CCATGG | 1 cut(s) | 1095 |
| BspACI | CCGC | 2 cut(s) | 274, 1356 |
| BspANI | GGCC | 3 cut(s) | 294, 447, 1303 |
| BspCNI | CTCAG | 2 cut(s) | 1298, 1467 |
| BspFNI | CGCG | 1 cut(s) | 253 |
| BspHI | TCATGA | 1 cut(s) | 1694 |
| BspMAI | CTGCAG | 3 cut(s) | 325, 637, 1612 |
| BspTNI | GGTCTC | 1 cut(s) | 356 |
| BssECI | CCNNGG | 3 cut(s) | 502, 1095, 1534 |
| BssMI | GATC | 1 cut(s) | 736 |
| BssNI | GRCGYC | 1 cut(s) | 562 |
| BssT1I | CCWWGG | 1 cut(s) | 1095 |
| Bst4CI | ACNGT | 8 cut(s) | 288, 526, 713, 961, 1013, 1028, 1034, 1213 |
| Bst6I | CTCTTC | 3 cut(s) | 87, 758, 1036 |
| BstACI | GRCGYC | 1 cut(s) | 562 |
| BstC8I | GCNNGC | 1 cut(s) | 677 |
| BstDEI | CTNAG | 4 cut(s) | 442, 650, 1285, 1475 |
| BstDSI | CCRYGG | 2 cut(s) | 502, 1095 |
| BstF5I | GGATG | 7 cut(s) | 22, 30, 376, 583, 677, 945, 1307 |
| BstFNI | CGCG | 1 cut(s) | 253 |
| BstKTI | GATC | 1 cut(s) | 739 |
| BstMAI | GTCTC | 2 cut(s) | 356, 1567 |
| BstMBI | GATC | 1 cut(s) | 736 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 80, 86, 250, 259, 371, 536, 831, 1565 |
| BstSFI | CTRYAG | 3 cut(s) | 321, 633, 1608 |
| BstUI | CGCG | 1 cut(s) | 253 |
| BstV1I | GCAGC | 3 cut(s) | 92, 548, 647 |
| BstV2I | GAAGAC | 3 cut(s) | 458, 889, 1360 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 961, 1512 |
| BsuRI | GGCC | 3 cut(s) | 294, 447, 1303 |
| BtgI | CCRYGG | 2 cut(s) | 502, 1095 |
| BtsCI | GGATG | 7 cut(s) | 22, 30, 376, 583, 677, 945, 1307 |
| BtsI | GCAGTG | 1 cut(s) | 630 |
| BtsIMutI | CAGTG | 4 cut(s) | 531, 630, 913, 1115 |
| Cac8I | GCNNGC | 1 cut(s) | 677 |
| CaiI | CAGNNNCTG | 1 cut(s) | 530 |
| CciI | TCATGA | 1 cut(s) | 1694 |
| Cfr13I | GGNCC | 2 cut(s) | 292, 1515 |
| CseI | GACGC | 2 cut(s) | 242, 1565 |
| Csp6I | GTAC | 3 cut(s) | 1116, 1394, 1414 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1213, 1248 |
| CviAII | CATG | 6 cut(s) | 616, 970, 1096, 1168, 1430, 1695 |
| CviQI | GTAC | 3 cut(s) | 1116, 1394, 1414 |
| DdeI | CTNAG | 4 cut(s) | 442, 650, 1285, 1475 |
| DpnI | GATC | 1 cut(s) | 738 |
| DpnII | GATC | 1 cut(s) | 736 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 348, 567 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 348, 567 |
| EaeI | YGGCCR | 1 cut(s) | 1301 |
| Eam1104I | CTCTTC | 3 cut(s) | 87, 758, 1036 |
| EarI | CTCTTC | 3 cut(s) | 87, 758, 1036 |
| Eco130I | CCWWGG | 1 cut(s) | 1095 |
| Eco24I | GRGCYC | 1 cut(s) | 611 |
| Eco31I | GGTCTC | 1 cut(s) | 356 |
| Eco47I | GGWCC | 1 cut(s) | 1515 |
| Eco57I | CTGAAG | 1 cut(s) | 889 |
| EcoT14I | CCWWGG | 1 cut(s) | 1095 |
| EcoT22I | ATGCAT | 2 cut(s) | 1188, 1618 |
| EcoT38I | GRGCYC | 1 cut(s) | 611 |
| ErhI | CCWWGG | 1 cut(s) | 1095 |
| FaeI | CATG | 6 cut(s) | 619, 973, 1099, 1171, 1433, 1698 |
| FaqI | GGGAC | 2 cut(s) | 464, 573 |
| FatI | CATG | 6 cut(s) | 615, 969, 1095, 1167, 1429, 1694 |
| FauNDI | CATATG | 1 cut(s) | 420 |
| FbaI | TGATCA | 1 cut(s) | 736 |
| FblI | GTMKAC | 1 cut(s) | 1662 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 537, 636 |
| FokI | GGATG | 7 cut(s) | 29, 37, 383, 590, 684, 952, 1294 |
| FriOI | GRGCYC | 1 cut(s) | 611 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 537, 636 |
| FspBI | CTAG | 2 cut(s) | 731, 830 |
| GluI | GCNGC | 3 cut(s) | 81, 537, 636 |
| GsaI | CCCAGC | 2 cut(s) | 1344, 1670 |
| GsuI | CTGGAG | 2 cut(s) | 768, 1488 |
| HaeIII | GGCC | 3 cut(s) | 294, 447, 1303 |
| HapII | CCGG | 1 cut(s) | 575 |
| HgaI | GACGC | 2 cut(s) | 242, 1565 |
| Hin1I | GRCGYC | 1 cut(s) | 562 |
| Hin1II | CATG | 6 cut(s) | 619, 973, 1099, 1171, 1433, 1698 |
| HincII | GTYRAC | 1 cut(s) | 967 |
| HindII | GTYRAC | 1 cut(s) | 967 |
| HindIII | AAGCTT | 1 cut(s) | 1161 |
| HpaII | CCGG | 1 cut(s) | 575 |
| HphI | GGTGA | 2 cut(s) | 883, 892 |
| Hpy166II | GTNNAC | 2 cut(s) | 967, 1663 |
| Hpy188I | TCNGA | 3 cut(s) | 370, 1288, 1535 |
| Hpy188III | TCNNGA | 6 cut(s) | 146, 785, 890, 1505, 1583, 1695 |
| Hpy8I | GTNNAC | 2 cut(s) | 967, 1663 |
| Hpy99I | CGWCG | 1 cut(s) | 34 |
| HpyAV | CCTTC | 3 cut(s) | 496, 913, 1319 |
| HpyCH4III | ACNGT | 8 cut(s) | 288, 526, 713, 961, 1013, 1028, 1034, 1213 |
| HpyCH4IV | ACGT | 3 cut(s) | 562, 1295, 1412 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 80, 86, 250, 259, 371, 536, 831, 1565 |
| HpyF3I | CTNAG | 4 cut(s) | 442, 650, 1285, 1475 |
| HpySE526I | ACGT | 3 cut(s) | 562, 1295, 1412 |
| Hsp92I | GRCGYC | 1 cut(s) | 562 |
| Hsp92II | CATG | 6 cut(s) | 619, 973, 1099, 1171, 1433, 1698 |
| Ksp22I | TGATCA | 1 cut(s) | 736 |
| Kzo9I | GATC | 1 cut(s) | 736 |
| LmnI | GCTCC | 1 cut(s) | 787 |
| Lsp1109I | GCAGC | 3 cut(s) | 92, 548, 647 |
| MaeI | CTAG | 2 cut(s) | 731, 830 |
| MaeII | ACGT | 3 cut(s) | 562, 1295, 1412 |
| MaeIII | GTNAC | 7 cut(s) | 583, 623, 645, 793, 1003, 1028, 1213 |
| MalI | GATC | 1 cut(s) | 738 |
| MboI | GATC | 1 cut(s) | 736 |
| MboII | GAAGA | 8 cut(s) | 104, 445, 458, 667, 745, 889, 1053, 1360 |
| MhlI | GDGCHC | 1 cut(s) | 611 |
| MlsI | TGGCCA | 1 cut(s) | 1303 |
| MluCI | AATT | 3 cut(s) | 397, 449, 1628 |
| MluNI | TGGCCA | 1 cut(s) | 1303 |
| MlyI | GAGTC | 2 cut(s) | 883, 1085 |
| MmeI | TCCRAC | 2 cut(s) | 20, 1493 |
| Mox20I | TGGCCA | 1 cut(s) | 1303 |
| Mph1103I | ATGCAT | 2 cut(s) | 1188, 1618 |
| MroXI | GAANNNNTTC | 3 cut(s) | 243, 364, 752 |
| MscI | TGGCCA | 1 cut(s) | 1303 |
| MseI | TTAA | 7 cut(s) | 396, 696, 1076, 1101, 1454, 1544, 1685 |
| MslI | CAYNNNNRTG | 1 cut(s) | 761 |
| Msp20I | TGGCCA | 1 cut(s) | 1303 |
| MspI | CCGG | 1 cut(s) | 575 |
| Mva1269I | GAATGC | 1 cut(s) | 223 |
| MvnI | CGCG | 1 cut(s) | 253 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 80, 86, 250, 259, 371, 536, 831, 1565 |
| NcoI | CCATGG | 1 cut(s) | 1095 |
| NdeI | CATATG | 1 cut(s) | 420 |
| NdeII | GATC | 1 cut(s) | 736 |
| NlaIII | CATG | 6 cut(s) | 619, 973, 1099, 1171, 1433, 1698 |
| NsiI | ATGCAT | 2 cut(s) | 1188, 1618 |
| PagI | TCATGA | 1 cut(s) | 1694 |
| PctI | GAATGC | 1 cut(s) | 223 |
| PdmI | GAANNNNTTC | 3 cut(s) | 243, 364, 752 |
| PfeI | GAWTC | 8 cut(s) | 360, 415, 811, 976, 1352, 1426, 1595, 1691 |
| PkrI | GCNGC | 3 cut(s) | 82, 538, 637 |
| PleI | GAGTC | 2 cut(s) | 882, 1085 |
| PpsI | GAGTC | 2 cut(s) | 882, 1085 |
| PshBI | ATTAAT | 1 cut(s) | 396 |
| Psp1406I | AACGTT | 1 cut(s) | 1295 |
| PspFI | CCCAGC | 2 cut(s) | 1340, 1666 |
| PspPI | GGNCC | 2 cut(s) | 292, 1515 |
| PstI | CTGCAG | 3 cut(s) | 325, 637, 1612 |
| PstNI | CAGNNNCTG | 1 cut(s) | 530 |
| RsaI | GTAC | 3 cut(s) | 1117, 1395, 1415 |
| RsaNI | GTAC | 3 cut(s) | 1116, 1394, 1414 |
| RseI | CAYNNNNRTG | 1 cut(s) | 761 |
| SaqAI | TTAA | 7 cut(s) | 396, 696, 1076, 1101, 1454, 1544, 1685 |
| SatI | GCNGC | 3 cut(s) | 81, 537, 636 |
| Sau3AI | GATC | 1 cut(s) | 736 |
| Sau96I | GGNCC | 2 cut(s) | 292, 1515 |
| SchI | GAGTC | 2 cut(s) | 883, 1085 |
| SduI | GDGCHC | 1 cut(s) | 611 |
| SfcI | CTRYAG | 3 cut(s) | 321, 633, 1608 |
| SinI | GGWCC | 1 cut(s) | 1515 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 761 |
| SpeI | ACTAGT | 1 cut(s) | 730 |
| Sse9I | AATT | 3 cut(s) | 397, 449, 1628 |
| SsiI | CCGC | 2 cut(s) | 274, 1356 |
| SspI | AATATT | 1 cut(s) | 1315 |
| SspMI | CTAG | 2 cut(s) | 731, 830 |
| StyI | CCWWGG | 1 cut(s) | 1095 |
| TaaI | ACNGT | 8 cut(s) | 288, 526, 713, 961, 1013, 1028, 1034, 1213 |
| TaiI | ACGT | 3 cut(s) | 565, 1298, 1415 |
| TaqI | TCGA | 7 cut(s) | 32, 147, 184, 234, 708, 877, 1619 |
| TasI | AATT | 3 cut(s) | 397, 449, 1628 |
| TatI | WGTACW | 1 cut(s) | 1393 |
| TfiI | GAWTC | 8 cut(s) | 360, 415, 811, 976, 1352, 1426, 1595, 1691 |
| Tru1I | TTAA | 7 cut(s) | 396, 696, 1076, 1101, 1454, 1544, 1685 |
| Tru9I | TTAA | 7 cut(s) | 396, 696, 1076, 1101, 1454, 1544, 1685 |
| TscAI | CASTG | 4 cut(s) | 531, 637, 913, 1115 |
| TseI | GCWGC | 3 cut(s) | 80, 536, 635 |
| TspDTI | ATGAA | 6 cut(s) | 130, 252, 879, 1418, 1473, 1683 |
| TspRI | CASTG | 4 cut(s) | 531, 637, 913, 1115 |
| VpaK11BI | GGWCC | 1 cut(s) | 1515 |
| VspI | ATTAAT | 1 cut(s) | 396 |
| XmiI | GTMKAC | 1 cut(s) | 1662 |
| XmnI | GAANNNNTTC | 3 cut(s) | 243, 364, 752 |
| XspI | CTAG | 2 cut(s) | 731, 830 |
| ZraI | GACGTC | 1 cut(s) | 563 |
| Zsp2I | ATGCAT | 2 cut(s) | 1188, 1618 |