Protein of unknown function (DUF1442)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_Vps41 | PF23411 | 45 - 401 | 1.1e-99 | Vps42 beta-propeller |
| Beta-prop_WDR3_1st | PF25173 | 65 - 134 | 2.7e-06 | WDR3 first beta-propeller domain |
| WD40_WDHD1_1st | PF24817 | 65 - 135 | 2e-06 | WDHD1 first WD40 domain |
| TPR_Vps41 | PF23556 | 437 - 777 | 9.3e-149 | Vps41 TPR-like region |
| Clathrin | PF00637 | 645 - 755 | 3.6e-09 | Region in Clathrin and VPS |
| zf-RING_Vps41 | PF23555 | 874 - 917 | 3.8e-13 | Vps41 C-terminal RING finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 186 |
| Acc36I | ACCTGC | 1 cut(s) | 1984 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 148 |
| AccBSI | CCGCTC | 1 cut(s) | 211 |
| AccI | GTMKAC | 1 cut(s) | 1959 |
| AccII | CGCG | 2 cut(s) | 221, 1011 |
| AciI | CCGC | 7 cut(s) | 14, 206, 211, 237, 575, 639, 1364 |
| AclWI | GGATC | 7 cut(s) | 437, 1402, 2106, 2239, 2306, 2633, 2756 |
| AcoI | YGGCCR | 2 cut(s) | 1282, 1577 |
| AcsI | RAATTY | 5 cut(s) | 281, 956, 2082, 2201, 2493 |
| AcuI | CTGAAG | 2 cut(s) | 1167, 1236 |
| AcvI | CACGTG | 1 cut(s) | 677 |
| AcyI | GRCGYC | 1 cut(s) | 183 |
| AdeI | CACNNNGTG | 1 cut(s) | 2576 |
| AfaI | GTAC | 7 cut(s) | 140, 868, 1008, 1059, 1166, 1455, 2860 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 23, 148, 427, 1061, 1115, 1970, 2397, 2828 |
| AflII | CTTAAG | 2 cut(s) | 1658, 2438 |
| AflIII | ACRYGT | 1 cut(s) | 1009 |
| AgsI | TTSAA | 9 cut(s) | 511, 1041, 1241, 1277, 1847, 1894, 1955, 2022, 2189 |
| AhlI | ACTAGT | 2 cut(s) | 1456, 2726 |
| AjiI | CACGTC | 2 cut(s) | 689, 980 |
| AjnI | CCWGG | 4 cut(s) | 840, 931, 1284, 2572 |
| Alw21I | GWGCWC | 3 cut(s) | 1252, 1557, 2295 |
| Alw26I | GTCTC | 5 cut(s) | 30, 599, 826, 991, 1875 |
| Alw44I | GTGCAC | 1 cut(s) | 1248 |
| AlwI | GGATC | 7 cut(s) | 437, 1402, 2106, 2239, 2306, 2633, 2756 |
| Ama87I | CYCGRG | 2 cut(s) | 224, 1483 |
| AoxI | GGCC | 4 cut(s) | 496, 815, 1282, 1577 |
| ApaLI | GTGCAC | 1 cut(s) | 1248 |
| ApeKI | GCWGC | 6 cut(s) | 156, 299, 797, 1122, 1268, 2029 |
| ApoI | RAATTY | 5 cut(s) | 281, 956, 2082, 2201, 2493 |
| AseI | ATTAAT | 1 cut(s) | 2169 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 349 |
| AspLEI | GCGC | 2 cut(s) | 223, 654 |
| AspS9I | GGNCC | 2 cut(s) | 563, 2819 |
| AsuC2I | CCSGG | 1 cut(s) | 2759 |
| AvaI | CYCGRG | 2 cut(s) | 224, 1483 |
| AvaII | GGWCC | 2 cut(s) | 563, 2819 |
| BaeGI | GKGCMC | 1 cut(s) | 1252 |
| BalI | TGGCCA | 2 cut(s) | 1284, 1579 |
| BanII | GRGCYC | 2 cut(s) | 492, 1557 |
| BauI | CACGAG | 1 cut(s) | 2523 |
| BbrPI | CACGTG | 1 cut(s) | 677 |
| BbsI | GAAGAC | 2 cut(s) | 945, 2249 |
| Bbv12I | GWGCWC | 3 cut(s) | 1252, 1557, 2295 |
| BbvCI | CCTCAGC | 1 cut(s) | 1626 |
| BbvI | GCAGC | 6 cut(s) | 168, 286, 809, 1134, 1255, 2016 |
| BceAI | ACGGC | 3 cut(s) | 40, 185, 250 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2617, 2651 |
| BciT130I | CCWGG | 4 cut(s) | 842, 933, 1286, 2574 |
| BclI | TGATCA | 2 cut(s) | 646, 1330 |
| BcnI | CCSGG | 1 cut(s) | 2759 |
| BcoDI | GTCTC | 5 cut(s) | 30, 599, 826, 991, 1875 |
| BcuI | ACTAGT | 2 cut(s) | 1456, 2726 |
| BfmI | CTRYAG | 4 cut(s) | 438, 1269, 1617, 2196 |
| BfrI | CTTAAG | 2 cut(s) | 1658, 2438 |
| BfuAI | ACCTGC | 1 cut(s) | 1984 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1364 |
| BisI | GCNGC | 7 cut(s) | 157, 300, 798, 1123, 1269, 1365, 2030 |
| BlsI | GCNGC | 7 cut(s) | 158, 301, 799, 1124, 1270, 1366, 2031 |
| BmcAI | AGTACT | 1 cut(s) | 1455 |
| Bme1390I | CCNGG | 5 cut(s) | 842, 933, 1286, 2574, 2759 |
| Bme18I | GGWCC | 2 cut(s) | 563, 2819 |
| BmeT110I | CYCGRG | 2 cut(s) | 224, 1483 |
| BmgBI | CACGTC | 2 cut(s) | 689, 980 |
| BmgT120I | GGNCC | 2 cut(s) | 563, 2819 |
| BmiI | GGNNCC | 5 cut(s) | 6, 126, 564, 2337, 2821 |
| BmrFI | CCNGG | 5 cut(s) | 842, 933, 1286, 2574, 2759 |
| BpiI | GAAGAC | 2 cut(s) | 945, 2249 |
| BpmI | CTGGAG | 1 cut(s) | 2369 |
| Bpu10I | CCTNAGC | 3 cut(s) | 693, 1626, 2363 |
| BpuEI | CTTGAG | 4 cut(s) | 119, 1857, 2087, 2538 |
| BpuMI | CCSGG | 1 cut(s) | 2759 |
| BsaAI | YACGTR | 2 cut(s) | 677, 1493 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1399 |
| BsaHI | GRCGYC | 1 cut(s) | 183 |
| BsaI | GGTCTC | 1 cut(s) | 991 |
| BsaJI | CCNNGG | 5 cut(s) | 128, 201, 931, 1285, 2757 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 577, 607, 1544, 1574 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 23, 148, 427, 1061, 1115, 1970, 2397, 2828 |
| Bse1I | ACTGG | 3 cut(s) | 831, 1451, 2352 |
| Bse3DI | GCAATG | 4 cut(s) | 597, 741, 1598, 2434 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1399 |
| BseBI | CCWGG | 4 cut(s) | 842, 933, 1286, 2574 |
| BseDI | CCNNGG | 5 cut(s) | 128, 201, 931, 1285, 2757 |
| BseGI | GGATG | 7 cut(s) | 219, 730, 857, 1192, 1637, 2433, 2806 |
| BseJI | GATNNNNATC | 1 cut(s) | 1399 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 23, 148, 427, 1061, 1115, 1970, 2397, 2828 |
| BseMI | GCAATG | 4 cut(s) | 597, 741, 1598, 2434 |
| BseMII | CTCAG | 6 cut(s) | 684, 837, 1128, 1640, 2259, 2377 |
| BseNI | ACTGG | 3 cut(s) | 831, 1451, 2352 |
| BseSI | GKGCMC | 1 cut(s) | 1252 |
| BseXI | GCAGC | 6 cut(s) | 168, 286, 809, 1134, 1255, 2016 |
| Bsh1236I | CGCG | 2 cut(s) | 221, 1011 |
| BshFI | GGCC | 4 cut(s) | 498, 817, 1284, 1579 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1252, 1557, 2295 |
| BsiHKCI | CYCGRG | 2 cut(s) | 224, 1483 |
| BsiSI | CCGG | 1 cut(s) | 2759 |
| BslFI | GGGAC | 8 cut(s) | 241, 253, 376, 1302, 1362, 1784, 2195, 2805 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 23, 148, 427, 1061, 1115, 1970, 2397, 2828 |
| BsmAI | GTCTC | 5 cut(s) | 30, 599, 826, 991, 1875 |
| BsmBI | CGTCTC | 2 cut(s) | 30, 1875 |
| BsmFI | GGGAC | 8 cut(s) | 241, 253, 376, 1302, 1362, 1784, 2195, 2805 |
| BsmI | GAATGC | 4 cut(s) | 159, 550, 1900, 1942 |
| BsnI | GGCC | 4 cut(s) | 498, 817, 1284, 1579 |
| Bso31I | GGTCTC | 1 cut(s) | 991 |
| BsoBI | CYCGRG | 2 cut(s) | 224, 1483 |
| Bsp1286I | GDGCHC | 4 cut(s) | 492, 1252, 1557, 2295 |
| Bsp1407I | TGTACA | 1 cut(s) | 1057 |
| BspACI | CCGC | 7 cut(s) | 14, 206, 211, 237, 575, 639, 1364 |
| BspANI | GGCC | 4 cut(s) | 498, 817, 1284, 1579 |
| BspCNI | CTCAG | 6 cut(s) | 685, 836, 1127, 1639, 2260, 2376 |
| BspFNI | CGCG | 2 cut(s) | 221, 1011 |
| BspLI | GGNNCC | 5 cut(s) | 6, 126, 564, 2337, 2821 |
| BspMAI | CTGCAG | 1 cut(s) | 1273 |
| BspMI | ACCTGC | 1 cut(s) | 1984 |
| BspPI | GGATC | 7 cut(s) | 437, 1402, 2106, 2239, 2306, 2633, 2756 |
| BspQI | GCTCTTC | 1 cut(s) | 1056 |
| BspTI | CTTAAG | 2 cut(s) | 1658, 2438 |
| BspTNI | GGTCTC | 1 cut(s) | 991 |
| BsrBI | CCGCTC | 1 cut(s) | 211 |
| BsrDI | GCAATG | 4 cut(s) | 597, 741, 1598, 2434 |
| BsrGI | TGTACA | 1 cut(s) | 1057 |
| BsrI | ACTGG | 3 cut(s) | 831, 1451, 2352 |
| BssECI | CCNNGG | 5 cut(s) | 128, 201, 931, 1285, 2757 |
| BssNI | GRCGYC | 1 cut(s) | 183 |
| BssSI | CACGAG | 1 cut(s) | 2523 |
| Bst2BI | CACGAG | 1 cut(s) | 2523 |
| Bst2UI | CCWGG | 4 cut(s) | 842, 933, 1286, 2574 |
| Bst4CI | ACNGT | 5 cut(s) | 367, 735, 1164, 1567, 2299 |
| Bst6I | CTCTTC | 6 cut(s) | 60, 93, 99, 105, 1056, 2184 |
| BstACI | GRCGYC | 1 cut(s) | 183 |
| BstAFI | CTTAAG | 2 cut(s) | 1658, 2438 |
| BstAUI | TGTACA | 1 cut(s) | 1057 |
| BstBAI | YACGTR | 2 cut(s) | 677, 1493 |
| BstC8I | GCNNGC | 8 cut(s) | 492, 496, 619, 1282, 1823, 1827, 2282, 2843 |
| BstDSI | CCRYGG | 1 cut(s) | 201 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1113 |
| BstF5I | GGATG | 7 cut(s) | 219, 730, 857, 1192, 1637, 2433, 2806 |
| BstFNI | CGCG | 2 cut(s) | 221, 1011 |
| BstHHI | GCGC | 2 cut(s) | 223, 654 |
| BstMAI | GTCTC | 5 cut(s) | 30, 599, 826, 991, 1875 |
| BstNI | CCWGG | 4 cut(s) | 842, 933, 1286, 2574 |
| BstNSI | RCATGY | 3 cut(s) | 575, 1829, 2845 |
| BstSCI | CCNGG | 5 cut(s) | 840, 931, 1284, 2572, 2757 |
| BstSFI | CTRYAG | 4 cut(s) | 438, 1269, 1617, 2196 |
| BstSLI | GKGCMC | 1 cut(s) | 1252 |
| BstUI | CGCG | 2 cut(s) | 221, 1011 |
| BstV1I | GCAGC | 6 cut(s) | 168, 286, 809, 1134, 1255, 2016 |
| BstV2I | GAAGAC | 2 cut(s) | 945, 2249 |
| BstX2I | RGATCY | 2 cut(s) | 442, 2098 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2347, 2831 |
| BstYI | RGATCY | 2 cut(s) | 442, 2098 |
| BsuRI | GGCC | 4 cut(s) | 498, 817, 1284, 1579 |
| BtgI | CCRYGG | 1 cut(s) | 201 |
| BtgZI | GCGATG | 1 cut(s) | 401 |
| BtrI | CACGTC | 2 cut(s) | 689, 980 |
| BtsCI | GGATG | 7 cut(s) | 219, 730, 857, 1192, 1637, 2433, 2806 |
| BtsI | GCAGTG | 1 cut(s) | 2258 |
| BtsIMutI | CAGTG | 6 cut(s) | 731, 1145, 1160, 1802, 2258, 2295 |
| BveI | ACCTGC | 1 cut(s) | 1984 |
| Cac8I | GCNNGC | 8 cut(s) | 492, 496, 619, 1282, 1823, 1827, 2282, 2843 |
| CfoI | GCGC | 2 cut(s) | 223, 654 |
| Cfr13I | GGNCC | 2 cut(s) | 563, 2819 |
| CseI | GACGC | 2 cut(s) | 238, 1430 |
| CsiI | ACCWGGT | 2 cut(s) | 840, 2572 |
| Csp6I | GTAC | 7 cut(s) | 139, 867, 1007, 1058, 1165, 1454, 2859 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1170, 1205 |
| CviQI | GTAC | 7 cut(s) | 139, 867, 1007, 1058, 1165, 1454, 2859 |
| DraI | TTTAAA | 1 cut(s) | 535 |
| DraIII | CACNNNGTG | 1 cut(s) | 2576 |
| EaeI | YGGCCR | 2 cut(s) | 1282, 1577 |
| Eam1104I | CTCTTC | 6 cut(s) | 60, 93, 99, 105, 1056, 2184 |
| EarI | CTCTTC | 6 cut(s) | 60, 93, 99, 105, 1056, 2184 |
| EciI | GGCGGA | 1 cut(s) | 221 |
| Ecl136II | GAGCTC | 1 cut(s) | 1555 |
| Eco147I | AGGCCT | 1 cut(s) | 817 |
| Eco24I | GRGCYC | 2 cut(s) | 492, 1557 |
| Eco31I | GGTCTC | 1 cut(s) | 991 |
| Eco47I | GGWCC | 2 cut(s) | 563, 2819 |
| Eco53kI | GAGCTC | 1 cut(s) | 1555 |
| Eco57I | CTGAAG | 2 cut(s) | 1167, 1236 |
| Eco72I | CACGTG | 1 cut(s) | 677 |
| Eco88I | CYCGRG | 2 cut(s) | 224, 1483 |
| EcoICRI | GAGCTC | 1 cut(s) | 1555 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1113 |
| EcoRII | CCWGG | 4 cut(s) | 840, 931, 1284, 2572 |
| EcoT38I | GRGCYC | 2 cut(s) | 492, 1557 |
| Esp3I | CGTCTC | 2 cut(s) | 30, 1875 |
| FaqI | GGGAC | 8 cut(s) | 241, 253, 376, 1302, 1362, 1784, 2195, 2805 |
| FauI | CCCGC | 1 cut(s) | 230 |
| FauNDI | CATATG | 2 cut(s) | 2077, 2630 |
| FbaI | TGATCA | 2 cut(s) | 646, 1330 |
| FblI | GTMKAC | 1 cut(s) | 1959 |
| Fnu4HI | GCNGC | 7 cut(s) | 157, 300, 798, 1123, 1269, 1365, 2030 |
| FokI | GGATG | 7 cut(s) | 226, 737, 844, 1199, 1624, 2420, 2813 |
| FriOI | GRGCYC | 2 cut(s) | 492, 1557 |
| Fsp4HI | GCNGC | 7 cut(s) | 157, 300, 798, 1123, 1269, 1365, 2030 |
| GlaI | GCGC | 2 cut(s) | 222, 653 |
| GluI | GCNGC | 7 cut(s) | 157, 300, 798, 1123, 1269, 1365, 2030 |
| GsuI | CTGGAG | 1 cut(s) | 2369 |
| HaeIII | GGCC | 4 cut(s) | 498, 817, 1284, 1579 |
| HapII | CCGG | 1 cut(s) | 2759 |
| HgaI | GACGC | 2 cut(s) | 238, 1430 |
| HhaI | GCGC | 2 cut(s) | 223, 654 |
| Hin1I | GRCGYC | 1 cut(s) | 183 |
| Hin6I | GCGC | 2 cut(s) | 221, 652 |
| HinP1I | GCGC | 2 cut(s) | 221, 652 |
| HincII | GTYRAC | 2 cut(s) | 1563, 2054 |
| HindII | GTYRAC | 2 cut(s) | 1563, 2054 |
| HindIII | AAGCTT | 1 cut(s) | 1260 |
| HinfI | GANTC | 9 cut(s) | 10, 905, 1778, 1783, 1843, 1913, 2018, 2353, 2714 |
| HpaII | CCGG | 1 cut(s) | 2759 |
| Hpy166II | GTNNAC | 6 cut(s) | 1250, 1298, 1563, 1960, 2054, 2455 |
| Hpy188I | TCNGA | 4 cut(s) | 9, 355, 1571, 2093 |
| Hpy8I | GTNNAC | 6 cut(s) | 1250, 1298, 1563, 1960, 2054, 2455 |
| Hpy99I | CGWCG | 2 cut(s) | 185, 188 |
| HpyAV | CCTTC | 8 cut(s) | 26, 323, 421, 946, 1142, 1762, 2065, 2602 |
| HpyCH4III | ACNGT | 5 cut(s) | 367, 735, 1164, 1567, 2299 |
| HpyCH4IV | ACGT | 5 cut(s) | 183, 676, 688, 979, 1492 |
| HpySE526I | ACGT | 5 cut(s) | 183, 676, 688, 979, 1492 |
| Hsp92I | GRCGYC | 1 cut(s) | 183 |
| HspAI | GCGC | 2 cut(s) | 221, 652 |
| Ksp22I | TGATCA | 2 cut(s) | 646, 1330 |
| LguI | GCTCTTC | 1 cut(s) | 1056 |
| LmnI | GCTCC | 8 cut(s) | 10, 124, 208, 708, 1111, 1552, 2110, 2290 |
| Lsp1109I | GCAGC | 6 cut(s) | 168, 286, 809, 1134, 1255, 2016 |
| MabI | ACCWGGT | 2 cut(s) | 840, 2572 |
| MaeII | ACGT | 5 cut(s) | 183, 676, 688, 979, 1492 |
| MaeIII | GTNAC | 2 cut(s) | 1015, 2767 |
| MbiI | CCGCTC | 1 cut(s) | 211 |
| MflI | RGATCY | 2 cut(s) | 442, 2098 |
| MhlI | GDGCHC | 4 cut(s) | 492, 1252, 1557, 2295 |
| MlsI | TGGCCA | 2 cut(s) | 1284, 1579 |
| MluI | ACGCGT | 1 cut(s) | 1009 |
| MluNI | TGGCCA | 2 cut(s) | 1284, 1579 |
| MmeI | TCCRAC | 1 cut(s) | 2281 |
| Mox20I | TGGCCA | 2 cut(s) | 1284, 1579 |
| MroXI | GAANNNNTTC | 1 cut(s) | 349 |
| MscI | TGGCCA | 2 cut(s) | 1284, 1579 |
| MseI | TTAA | 6 cut(s) | 534, 1659, 2169, 2439, 2595, 2661 |
| MslI | CAYNNNNRTG | 4 cut(s) | 555, 1372, 1405, 2223 |
| Msp20I | TGGCCA | 2 cut(s) | 1284, 1579 |
| MspCI | CTTAAG | 2 cut(s) | 1658, 2438 |
| MspI | CCGG | 1 cut(s) | 2759 |
| MspR9I | CCNGG | 5 cut(s) | 842, 933, 1286, 2574, 2759 |
| Mva1269I | GAATGC | 4 cut(s) | 159, 550, 1900, 1942 |
| MvaI | CCWGG | 4 cut(s) | 842, 933, 1286, 2574 |
| MvnI | CGCG | 2 cut(s) | 221, 1011 |
| NciI | CCSGG | 1 cut(s) | 2759 |
| NdeI | CATATG | 2 cut(s) | 2077, 2630 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 126, 564, 2337, 2821 |
| NmeAIII | GCCGAG | 2 cut(s) | 153, 243 |
| NmuCI | GTSAC | 1 cut(s) | 1015 |
| NspI | RCATGY | 3 cut(s) | 575, 1829, 2845 |
| PaeI | GCATGC | 2 cut(s) | 1829, 2845 |
| PceI | AGGCCT | 1 cut(s) | 817 |
| PciSI | GCTCTTC | 1 cut(s) | 1056 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 173 |
| PctI | GAATGC | 4 cut(s) | 159, 550, 1900, 1942 |
| PdmI | GAANNNNTTC | 1 cut(s) | 349 |
| PfeI | GAWTC | 9 cut(s) | 10, 905, 1778, 1783, 1843, 1913, 2018, 2353, 2714 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 148 |
| PkrI | GCNGC | 7 cut(s) | 158, 301, 799, 1124, 1270, 1366, 2031 |
| PmaCI | CACGTG | 1 cut(s) | 677 |
| PmlI | CACGTG | 1 cut(s) | 677 |
| Ppu21I | YACGTR | 2 cut(s) | 677, 1493 |
| PshBI | ATTAAT | 1 cut(s) | 2169 |
| Psp124BI | GAGCTC | 1 cut(s) | 1557 |
| Psp6I | CCWGG | 4 cut(s) | 840, 931, 1284, 2572 |
| PspCI | CACGTG | 1 cut(s) | 677 |
| PspGI | CCWGG | 4 cut(s) | 840, 931, 1284, 2572 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 126, 564, 2337, 2821 |
| PspPI | GGNCC | 2 cut(s) | 563, 2819 |
| PstI | CTGCAG | 1 cut(s) | 1273 |
| PsuI | RGATCY | 2 cut(s) | 442, 2098 |
| RsaI | GTAC | 7 cut(s) | 140, 868, 1008, 1059, 1166, 1455, 2860 |
| RsaNI | GTAC | 7 cut(s) | 139, 867, 1007, 1058, 1165, 1454, 2859 |
| RseI | CAYNNNNRTG | 4 cut(s) | 555, 1372, 1405, 2223 |
| SacI | GAGCTC | 1 cut(s) | 1557 |
| SapI | GCTCTTC | 1 cut(s) | 1056 |
| SaqAI | TTAA | 6 cut(s) | 534, 1659, 2169, 2439, 2595, 2661 |
| SatI | GCNGC | 7 cut(s) | 157, 300, 798, 1123, 1269, 1365, 2030 |
| Sau96I | GGNCC | 2 cut(s) | 563, 2819 |
| ScaI | AGTACT | 1 cut(s) | 1455 |
| ScrFI | CCNGG | 5 cut(s) | 842, 933, 1286, 2574, 2759 |
| SduI | GDGCHC | 4 cut(s) | 492, 1252, 1557, 2295 |
| SexAI | ACCWGGT | 2 cut(s) | 840, 2572 |
| SfcI | CTRYAG | 4 cut(s) | 438, 1269, 1617, 2196 |
| SinI | GGWCC | 2 cut(s) | 563, 2819 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 555, 1372, 1405, 2223 |
| SmlI | CTYRAG | 6 cut(s) | 134, 1658, 1872, 2066, 2438, 2553 |
| SmoI | CTYRAG | 6 cut(s) | 134, 1658, 1872, 2066, 2438, 2553 |
| SpeI | ACTAGT | 2 cut(s) | 1456, 2726 |
| SphI | GCATGC | 2 cut(s) | 1829, 2845 |
| SseBI | AGGCCT | 1 cut(s) | 817 |
| SsiI | CCGC | 7 cut(s) | 14, 206, 211, 237, 575, 639, 1364 |
| SstI | GAGCTC | 1 cut(s) | 1557 |
| StuI | AGGCCT | 1 cut(s) | 817 |
| StyD4I | CCNGG | 5 cut(s) | 840, 931, 1284, 2572, 2757 |
| TaaI | ACNGT | 5 cut(s) | 367, 735, 1164, 1567, 2299 |
| TaiI | ACGT | 5 cut(s) | 186, 679, 691, 982, 1495 |
| TaqI | TCGA | 5 cut(s) | 255, 1758, 1781, 2606, 2637 |
| TatI | WGTACW | 4 cut(s) | 1057, 1164, 1453, 2858 |
| TauI | GCSGC | 1 cut(s) | 1367 |
| TfiI | GAWTC | 9 cut(s) | 10, 905, 1778, 1783, 1843, 1913, 2018, 2353, 2714 |
| Tru1I | TTAA | 6 cut(s) | 534, 1659, 2169, 2439, 2595, 2661 |
| Tru9I | TTAA | 6 cut(s) | 534, 1659, 2169, 2439, 2595, 2661 |
| TscAI | CASTG | 6 cut(s) | 738, 1145, 1167, 1809, 2258, 2302 |
| TseFI | GTSAC | 1 cut(s) | 1015 |
| TseI | GCWGC | 6 cut(s) | 156, 299, 797, 1122, 1268, 2029 |
| Tsp45I | GTSAC | 1 cut(s) | 1015 |
| TspGWI | ACGGA | 3 cut(s) | 1565, 1857, 2631 |
| TspRI | CASTG | 6 cut(s) | 738, 1145, 1167, 1809, 2258, 2302 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 148 |
| Vha464I | CTTAAG | 2 cut(s) | 1658, 2438 |
| VneI | GTGCAC | 1 cut(s) | 1248 |
| VpaK11BI | GGWCC | 2 cut(s) | 563, 2819 |
| VspI | ATTAAT | 1 cut(s) | 2169 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1113 |
| XapI | RAATTY | 5 cut(s) | 281, 956, 2082, 2201, 2493 |
| XbaI | TCTAGA | 2 cut(s) | 467, 1319 |
| XceI | RCATGY | 3 cut(s) | 575, 1829, 2845 |
| XmiI | GTMKAC | 1 cut(s) | 1959 |
| XmnI | GAANNNNTTC | 1 cut(s) | 349 |
| ZraI | GACGTC | 1 cut(s) | 184 |
| ZrmI | AGTACT | 1 cut(s) | 1455 |