Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 63 - 112 | 4e-08 | PPR repeat family |
| PPR_3 | PF13812 | 123 - 179 | 3e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 130 - 161 | 4.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 133 - 182 | 1.2e-11 | PPR repeat family |
| PPR_1 | PF12854 | 166 - 198 | 1.6e-08 | PPR repeat |
| PPR_3 | PF13812 | 166 - 214 | 1.4e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 169 - 218 | 9.4e-13 | PPR repeat family |
| PPR_long | PF17177 | 189 - 290 | 1.7e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 201 - 232 | 3.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 204 - 253 | 1.7e-14 | PPR repeat family |
| PPR_3 | PF13812 | 228 - 287 | 6.8e-14 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 235 - 268 | 2.5e-11 | PPR repeat |
| PPR_2 | PF13041 | 240 - 288 | 5.6e-17 | PPR repeat family |
| PPR | PF01535 | 242 - 271 | 8.5e-08 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 285 |
| AcyI | GRCGYC | 1 cut(s) | 178 |
| AflII | CTTAAG | 2 cut(s) | 440, 581 |
| AluBI | AGCT | 3 cut(s) | 77, 682, 779 |
| AluI | AGCT | 3 cut(s) | 77, 682, 779 |
| Alw21I | GWGCWC | 1 cut(s) | 831 |
| Alw44I | GTGCAC | 1 cut(s) | 827 |
| Ama87I | CYCGRG | 1 cut(s) | 72 |
| AoxI | GGCC | 2 cut(s) | 116, 453 |
| ApaLI | GTGCAC | 1 cut(s) | 827 |
| ApeKI | GCWGC | 4 cut(s) | 4, 461, 464, 566 |
| ApoI | RAATTY | 1 cut(s) | 285 |
| AseI | ATTAAT | 1 cut(s) | 321 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 168 |
| AspS9I | GGNCC | 1 cut(s) | 116 |
| AsuHPI | GGTGA | 1 cut(s) | 814 |
| AvaI | CYCGRG | 1 cut(s) | 72 |
| BaeGI | GKGCMC | 1 cut(s) | 831 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 648, 681 |
| BbsI | GAAGAC | 1 cut(s) | 5 |
| Bbv12I | GWGCWC | 1 cut(s) | 831 |
| BbvI | GCAGC | 3 cut(s) | 448, 476, 578 |
| BccI | CCATC | 2 cut(s) | 583, 865 |
| BceAI | ACGGC | 1 cut(s) | 445 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 619, 653 |
| BciVI | GTATCC | 2 cut(s) | 136, 649 |
| BfaI | CTAG | 4 cut(s) | 96, 308, 662, 877 |
| BfmI | CTRYAG | 2 cut(s) | 462, 625 |
| BfrI | CTTAAG | 2 cut(s) | 440, 581 |
| BfuI | GTATCC | 2 cut(s) | 136, 649 |
| BisI | GCNGC | 4 cut(s) | 5, 462, 465, 567 |
| BlsI | GCNGC | 4 cut(s) | 6, 463, 466, 568 |
| BmeT110I | CYCGRG | 1 cut(s) | 72 |
| BmgT120I | GGNCC | 1 cut(s) | 116 |
| BmsI | GCATC | 1 cut(s) | 661 |
| BpiI | GAAGAC | 1 cut(s) | 5 |
| BsaHI | GRCGYC | 1 cut(s) | 178 |
| BsaJI | CCNNGG | 1 cut(s) | 456 |
| BseDI | CCNNGG | 1 cut(s) | 456 |
| BseGI | GGATG | 1 cut(s) | 876 |
| BseSI | GKGCMC | 1 cut(s) | 831 |
| BseXI | GCAGC | 3 cut(s) | 448, 476, 578 |
| BsgI | GTGCAG | 1 cut(s) | 585 |
| BshFI | GGCC | 2 cut(s) | 118, 455 |
| BsiHKAI | GWGCWC | 1 cut(s) | 831 |
| BsiHKCI | CYCGRG | 1 cut(s) | 72 |
| BslFI | GGGAC | 1 cut(s) | 182 |
| BsmFI | GGGAC | 1 cut(s) | 182 |
| BsnI | GGCC | 2 cut(s) | 118, 455 |
| BsoBI | CYCGRG | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 1 cut(s) | 831 |
| Bsp143I | GATC | 1 cut(s) | 633 |
| BspANI | GGCC | 2 cut(s) | 118, 455 |
| BspHI | TCATGA | 1 cut(s) | 405 |
| BspMAI | CTGCAG | 1 cut(s) | 466 |
| BspTI | CTTAAG | 2 cut(s) | 440, 581 |
| BssECI | CCNNGG | 1 cut(s) | 456 |
| BssMI | GATC | 1 cut(s) | 633 |
| BssNI | GRCGYC | 1 cut(s) | 178 |
| Bst4CI | ACNGT | 1 cut(s) | 554 |
| BstACI | GRCGYC | 1 cut(s) | 178 |
| BstAFI | CTTAAG | 2 cut(s) | 440, 581 |
| BstC8I | GCNNGC | 2 cut(s) | 503, 608 |
| BstF5I | GGATG | 1 cut(s) | 876 |
| BstKTI | GATC | 1 cut(s) | 636 |
| BstMBI | GATC | 1 cut(s) | 633 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 175, 184, 461 |
| BstSFI | CTRYAG | 2 cut(s) | 462, 625 |
| BstSLI | GKGCMC | 1 cut(s) | 831 |
| BstV1I | GCAGC | 3 cut(s) | 448, 476, 578 |
| BstV2I | GAAGAC | 1 cut(s) | 5 |
| BsuI | GTATCC | 2 cut(s) | 136, 649 |
| BsuRI | GGCC | 2 cut(s) | 118, 455 |
| BtsCI | GGATG | 1 cut(s) | 876 |
| Cac8I | GCNNGC | 2 cut(s) | 503, 608 |
| CciI | TCATGA | 1 cut(s) | 405 |
| Cfr13I | GGNCC | 1 cut(s) | 116 |
| CseI | GACGC | 2 cut(s) | 167, 527 |
| CviAII | CATG | 2 cut(s) | 406, 746 |
| DpnI | GATC | 1 cut(s) | 635 |
| DpnII | GATC | 1 cut(s) | 633 |
| Eco88I | CYCGRG | 1 cut(s) | 72 |
| EcoRI | GAATTC | 1 cut(s) | 285 |
| EcoT22I | ATGCAT | 1 cut(s) | 676 |
| FaeI | CATG | 2 cut(s) | 409, 749 |
| FaiI | YATR | 6 cut(s) | 303, 407, 627, 732, 747, 813 |
| FaqI | GGGAC | 1 cut(s) | 182 |
| FatI | CATG | 2 cut(s) | 405, 745 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 462, 465, 567 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 462, 465, 567 |
| FspBI | CTAG | 4 cut(s) | 96, 308, 662, 877 |
| GluI | GCNGC | 4 cut(s) | 5, 462, 465, 567 |
| HaeIII | GGCC | 2 cut(s) | 118, 455 |
| HgaI | GACGC | 2 cut(s) | 167, 527 |
| Hin1I | GRCGYC | 1 cut(s) | 178 |
| Hin1II | CATG | 2 cut(s) | 409, 749 |
| HinfI | GANTC | 3 cut(s) | 92, 217, 742 |
| HphI | GGTGA | 1 cut(s) | 814 |
| Hpy166II | GTNNAC | 2 cut(s) | 809, 829 |
| Hpy188III | TCNNGA | 6 cut(s) | 72, 96, 214, 282, 293, 406 |
| Hpy8I | GTNNAC | 2 cut(s) | 809, 829 |
| Hpy99I | CGWCG | 1 cut(s) | 164 |
| HpyAV | CCTTC | 2 cut(s) | 198, 844 |
| HpyCH4III | ACNGT | 1 cut(s) | 554 |
| HpyCH4IV | ACGT | 1 cut(s) | 615 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 175, 184, 461 |
| HpySE526I | ACGT | 1 cut(s) | 615 |
| Hsp92I | GRCGYC | 1 cut(s) | 178 |
| Hsp92II | CATG | 2 cut(s) | 409, 749 |
| Kzo9I | GATC | 1 cut(s) | 633 |
| LpnPI | CCDG | 4 cut(s) | 132, 295, 306, 411 |
| Lsp1109I | GCAGC | 3 cut(s) | 448, 476, 578 |
| LweI | GCATC | 1 cut(s) | 661 |
| MaeI | CTAG | 4 cut(s) | 96, 308, 662, 877 |
| MaeII | ACGT | 1 cut(s) | 615 |
| MaeIII | GTNAC | 2 cut(s) | 371, 554 |
| MalI | GATC | 1 cut(s) | 635 |
| MboI | GATC | 1 cut(s) | 633 |
| MboII | GAAGA | 9 cut(s) | 5, 8, 15, 18, 34, 370, 428, 598, 605 |
| MfeI | CAATTG | 1 cut(s) | 575 |
| MhlI | GDGCHC | 1 cut(s) | 831 |
| MluCI | AATT | 9 cut(s) | 49, 285, 322, 383, 496, 575, 699, 758, 766 |
| MlyI | GAGTC | 1 cut(s) | 211 |
| MmeI | TCCRAC | 1 cut(s) | 465 |
| MnlI | CCTC | 6 cut(s) | 18, 133, 192, 445, 451, 745 |
| Mph1103I | ATGCAT | 1 cut(s) | 676 |
| MroXI | GAANNNNTTC | 1 cut(s) | 168 |
| MseI | TTAA | 5 cut(s) | 321, 441, 534, 582, 702 |
| MspCI | CTTAAG | 2 cut(s) | 440, 581 |
| MunI | CAATTG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 175, 184, 461 |
| NdeII | GATC | 1 cut(s) | 633 |
| NlaIII | CATG | 2 cut(s) | 409, 749 |
| NmeAIII | GCCGAG | 1 cut(s) | 481 |
| NsiI | ATGCAT | 1 cut(s) | 676 |
| PaeR7I | CTCGAG | 1 cut(s) | 72 |
| PagI | TCATGA | 1 cut(s) | 405 |
| PdmI | GAANNNNTTC | 1 cut(s) | 168 |
| PfeI | GAWTC | 2 cut(s) | 92, 742 |
| PkrI | GCNGC | 4 cut(s) | 6, 463, 466, 568 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| PshBI | ATTAAT | 1 cut(s) | 321 |
| PspPI | GGNCC | 1 cut(s) | 116 |
| PstI | CTGCAG | 1 cut(s) | 466 |
| SaqAI | TTAA | 5 cut(s) | 321, 441, 534, 582, 702 |
| SatI | GCNGC | 4 cut(s) | 5, 462, 465, 567 |
| Sau3AI | GATC | 1 cut(s) | 633 |
| Sau96I | GGNCC | 1 cut(s) | 116 |
| SchI | GAGTC | 1 cut(s) | 211 |
| SduI | GDGCHC | 1 cut(s) | 831 |
| SetI | ASST | 9 cut(s) | 79, 391, 413, 618, 684, 731, 737, 781, 836 |
| SfaNI | GCATC | 1 cut(s) | 661 |
| SfcI | CTRYAG | 2 cut(s) | 462, 625 |
| Sfr274I | CTCGAG | 1 cut(s) | 72 |
| SlaI | CTCGAG | 1 cut(s) | 72 |
| SmlI | CTYRAG | 3 cut(s) | 72, 440, 581 |
| SmoI | CTYRAG | 3 cut(s) | 72, 440, 581 |
| Sse9I | AATT | 9 cut(s) | 49, 285, 322, 383, 496, 575, 699, 758, 766 |
| SspMI | CTAG | 4 cut(s) | 96, 308, 662, 877 |
| TaaI | ACNGT | 1 cut(s) | 554 |
| TaiI | ACGT | 1 cut(s) | 618 |
| TaqI | TCGA | 4 cut(s) | 73, 159, 474, 639 |
| TasI | AATT | 9 cut(s) | 49, 285, 322, 383, 496, 575, 699, 758, 766 |
| TfiI | GAWTC | 2 cut(s) | 92, 742 |
| Tru1I | TTAA | 5 cut(s) | 321, 441, 534, 582, 702 |
| Tru9I | TTAA | 5 cut(s) | 321, 441, 534, 582, 702 |
| TseI | GCWGC | 4 cut(s) | 4, 461, 464, 566 |
| TspDTI | ATGAA | 3 cut(s) | 161, 734, 810 |
| TspGWI | ACGGA | 1 cut(s) | 181 |
| Vha464I | CTTAAG | 2 cut(s) | 440, 581 |
| VneI | GTGCAC | 1 cut(s) | 827 |
| VspI | ATTAAT | 1 cut(s) | 321 |
| XapI | RAATTY | 1 cut(s) | 285 |
| XbaI | TCTAGA | 1 cut(s) | 95 |
| XhoI | CTCGAG | 1 cut(s) | 72 |
| XmnI | GAANNNNTTC | 1 cut(s) | 168 |
| XspI | CTAG | 4 cut(s) | 96, 308, 662, 877 |
| Zsp2I | ATGCAT | 1 cut(s) | 676 |