Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 82 - 129 | 1.6e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 83 - 109 | 1.2e-07 | PPR repeat |
| PPR_2 | PF13041 | 83 - 128 | 5.4e-13 | PPR repeat family |
| PPR | PF01535 | 83 - 113 | 9.6e-06 | PPR repeat |
| PPR_1 | PF12854 | 111 - 143 | 1.4e-09 | PPR repeat |
| PPR_2 | PF13041 | 115 - 149 | 6.4e-06 | PPR repeat family |
| PPR_2 | PF13041 | 147 - 194 | 2.1e-12 | PPR repeat family |
| PPR | PF01535 | 150 - 179 | 3.3e-06 | PPR repeat |
| PPR_1 | PF12854 | 177 - 210 | 1.3e-09 | PPR repeat |
| PPR_2 | PF13041 | 181 - 212 | 8.9e-06 | PPR repeat family |
| PPR | PF01535 | 185 - 213 | 1.2e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 659 |
| AccI | GTMKAC | 1 cut(s) | 221 |
| AccII | CGCG | 1 cut(s) | 299 |
| AciI | CCGC | 4 cut(s) | 239, 297, 299, 636 |
| AcoI | YGGCCR | 1 cut(s) | 300 |
| AfaI | GTAC | 1 cut(s) | 131 |
| AfeI | AGCGCT | 1 cut(s) | 34 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 126 |
| AgsI | TTSAA | 5 cut(s) | 256, 454, 515, 527, 539 |
| AhlI | ACTAGT | 1 cut(s) | 394 |
| AluBI | AGCT | 1 cut(s) | 310 |
| AluI | AGCT | 1 cut(s) | 310 |
| Alw26I | GTCTC | 1 cut(s) | 85 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 313 |
| Aor51HI | AGCGCT | 1 cut(s) | 34 |
| AoxI | GGCC | 2 cut(s) | 12, 300 |
| ApeKI | GCWGC | 3 cut(s) | 176, 185, 633 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 416 |
| AspLEI | GCGC | 1 cut(s) | 35 |
| AsuC2I | CCSGG | 2 cut(s) | 121, 139 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 381, 414 |
| BbvI | GCAGC | 3 cut(s) | 188, 197, 645 |
| BccI | CCATC | 6 cut(s) | 124, 277, 316, 374, 481, 566 |
| BciVI | GTATCC | 1 cut(s) | 382 |
| BcnI | CCSGG | 2 cut(s) | 121, 139 |
| BcoDI | GTCTC | 1 cut(s) | 85 |
| BcuI | ACTAGT | 1 cut(s) | 394 |
| BfaI | CTAG | 3 cut(s) | 30, 56, 395 |
| BfmI | CTRYAG | 1 cut(s) | 358 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BfuI | GTATCC | 1 cut(s) | 382 |
| BisI | GCNGC | 6 cut(s) | 177, 186, 240, 300, 634, 637 |
| BlsI | GCNGC | 6 cut(s) | 178, 187, 241, 301, 635, 638 |
| Bme1390I | CCNGG | 2 cut(s) | 121, 139 |
| BmiI | GGNNCC | 2 cut(s) | 114, 640 |
| BmrFI | CCNGG | 2 cut(s) | 121, 139 |
| BmsI | GCATC | 5 cut(s) | 188, 326, 394, 457, 487 |
| BpuMI | CCSGG | 2 cut(s) | 121, 139 |
| Bsa29I | ATCGAT | 1 cut(s) | 495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 491 |
| BsaI | GGTCTC | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 3 cut(s) | 86, 120, 297 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 126 |
| Bse1I | ACTGG | 1 cut(s) | 267 |
| Bse3DI | GCAATG | 1 cut(s) | 414 |
| Bse8I | GATNNNNATC | 1 cut(s) | 491 |
| BseCI | ATCGAT | 1 cut(s) | 495 |
| BseDI | CCNNGG | 3 cut(s) | 86, 120, 297 |
| BseGI | GGATG | 5 cut(s) | 61, 116, 341, 492, 577 |
| BseJI | GATNNNNATC | 1 cut(s) | 491 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 126 |
| BseMI | GCAATG | 1 cut(s) | 414 |
| BseMII | CTCAG | 2 cut(s) | 305, 435 |
| BseNI | ACTGG | 1 cut(s) | 267 |
| BseRI | GAGGAG | 1 cut(s) | 603 |
| BseXI | GCAGC | 3 cut(s) | 188, 197, 645 |
| BseYI | CCCAGC | 1 cut(s) | 125 |
| Bsh1236I | CGCG | 1 cut(s) | 299 |
| BshFI | GGCC | 2 cut(s) | 14, 302 |
| BshVI | ATCGAT | 1 cut(s) | 495 |
| BsiSI | CCGG | 2 cut(s) | 120, 138 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 126 |
| BsmAI | GTCTC | 1 cut(s) | 85 |
| BsnI | GGCC | 2 cut(s) | 14, 302 |
| Bso31I | GGTCTC | 1 cut(s) | 85 |
| Bsp143I | GATC | 2 cut(s) | 58, 619 |
| BspACI | CCGC | 4 cut(s) | 239, 297, 299, 636 |
| BspANI | GGCC | 2 cut(s) | 14, 302 |
| BspCNI | CTCAG | 2 cut(s) | 306, 434 |
| BspDI | ATCGAT | 1 cut(s) | 495 |
| BspFNI | CGCG | 1 cut(s) | 299 |
| BspLI | GGNNCC | 2 cut(s) | 114, 640 |
| BspQI | GCTCTTC | 1 cut(s) | 186 |
| BspTNI | GGTCTC | 1 cut(s) | 85 |
| BsrDI | GCAATG | 1 cut(s) | 414 |
| BsrI | ACTGG | 1 cut(s) | 267 |
| BssECI | CCNNGG | 3 cut(s) | 86, 120, 297 |
| BssMI | GATC | 2 cut(s) | 58, 619 |
| BssNAI | GTATAC | 1 cut(s) | 222 |
| Bst1107I | GTATAC | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 1 cut(s) | 377 |
| Bst6I | CTCTTC | 4 cut(s) | 81, 186, 422, 430 |
| BstC8I | GCNNGC | 3 cut(s) | 16, 341, 584 |
| BstDEI | CTNAG | 2 cut(s) | 314, 421 |
| BstDSI | CCRYGG | 1 cut(s) | 297 |
| BstF5I | GGATG | 5 cut(s) | 61, 116, 341, 492, 577 |
| BstFNI | CGCG | 1 cut(s) | 299 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 1 cut(s) | 35 |
| BstKTI | GATC | 2 cut(s) | 61, 622 |
| BstMAI | GTCTC | 1 cut(s) | 85 |
| BstMBI | GATC | 2 cut(s) | 58, 619 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 182, 185 |
| BstSCI | CCNGG | 2 cut(s) | 119, 137 |
| BstSFI | CTRYAG | 1 cut(s) | 358 |
| BstUI | CGCG | 1 cut(s) | 299 |
| BstV1I | GCAGC | 3 cut(s) | 188, 197, 645 |
| BstZ17I | GTATAC | 1 cut(s) | 222 |
| Bsu15I | ATCGAT | 1 cut(s) | 495 |
| BsuI | GTATCC | 1 cut(s) | 382 |
| BsuRI | GGCC | 2 cut(s) | 14, 302 |
| BsuTUI | ATCGAT | 1 cut(s) | 495 |
| BtgI | CCRYGG | 1 cut(s) | 297 |
| BtsCI | GGATG | 5 cut(s) | 61, 116, 341, 492, 577 |
| BtsIMutI | CAGTG | 1 cut(s) | 260 |
| Cac8I | GCNNGC | 3 cut(s) | 16, 341, 584 |
| CaiI | CAGNNNCTG | 1 cut(s) | 313 |
| CfoI | GCGC | 1 cut(s) | 35 |
| Cfr42I | CCGCGG | 1 cut(s) | 300 |
| ClaI | ATCGAT | 1 cut(s) | 495 |
| Csp6I | GTAC | 1 cut(s) | 130 |
| CviAII | CATG | 1 cut(s) | 280 |
| CviQI | GTAC | 1 cut(s) | 130 |
| DdeI | CTNAG | 2 cut(s) | 314, 421 |
| DpnI | GATC | 2 cut(s) | 60, 621 |
| DpnII | GATC | 2 cut(s) | 58, 619 |
| EaeI | YGGCCR | 1 cut(s) | 300 |
| Eam1104I | CTCTTC | 4 cut(s) | 81, 186, 422, 430 |
| EarI | CTCTTC | 4 cut(s) | 81, 186, 422, 430 |
| Eco147I | AGGCCT | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 1 cut(s) | 85 |
| Eco47III | AGCGCT | 1 cut(s) | 34 |
| FaeI | CATG | 1 cut(s) | 283 |
| FatI | CATG | 1 cut(s) | 279 |
| FblI | GTMKAC | 1 cut(s) | 221 |
| Fnu4HI | GCNGC | 6 cut(s) | 177, 186, 240, 300, 634, 637 |
| FokI | GGATG | 5 cut(s) | 48, 103, 348, 499, 584 |
| Fsp4HI | GCNGC | 6 cut(s) | 177, 186, 240, 300, 634, 637 |
| FspBI | CTAG | 3 cut(s) | 30, 56, 395 |
| GlaI | GCGC | 1 cut(s) | 34 |
| GluI | GCNGC | 6 cut(s) | 177, 186, 240, 300, 634, 637 |
| GsaI | CCCAGC | 1 cut(s) | 129 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 2 cut(s) | 14, 302 |
| HapII | CCGG | 2 cut(s) | 120, 138 |
| HhaI | GCGC | 1 cut(s) | 35 |
| Hin1II | CATG | 1 cut(s) | 283 |
| Hin6I | GCGC | 1 cut(s) | 33 |
| HinP1I | GCGC | 1 cut(s) | 33 |
| HinfI | GANTC | 1 cut(s) | 523 |
| HpaII | CCGG | 2 cut(s) | 120, 138 |
| Hpy166II | GTNNAC | 1 cut(s) | 222 |
| Hpy188I | TCNGA | 5 cut(s) | 10, 90, 315, 424, 653 |
| Hpy188III | TCNNGA | 1 cut(s) | 56 |
| Hpy8I | GTNNAC | 1 cut(s) | 222 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 4 cut(s) | 54, 60, 92, 320 |
| HpyCH4III | ACNGT | 1 cut(s) | 377 |
| HpyCH4IV | ACGT | 1 cut(s) | 456 |
| HpyCH4V | TGCA | 7 cut(s) | 18, 176, 279, 407, 445, 470, 500 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 182, 185 |
| HpyF3I | CTNAG | 2 cut(s) | 314, 421 |
| HpySE526I | ACGT | 1 cut(s) | 456 |
| Hsp92II | CATG | 1 cut(s) | 283 |
| HspAI | GCGC | 1 cut(s) | 33 |
| KspI | CCGCGG | 1 cut(s) | 300 |
| Kzo9I | GATC | 2 cut(s) | 58, 619 |
| LguI | GCTCTTC | 1 cut(s) | 186 |
| LmnI | GCTCC | 2 cut(s) | 112, 644 |
| LpnPI | CCDG | 8 cut(s) | 21, 28, 78, 111, 117, 133, 151, 248 |
| Lsp1109I | GCAGC | 3 cut(s) | 188, 197, 645 |
| LweI | GCATC | 5 cut(s) | 188, 326, 394, 457, 487 |
| MaeI | CTAG | 3 cut(s) | 30, 56, 395 |
| MaeII | ACGT | 1 cut(s) | 456 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 2 cut(s) | 60, 621 |
| MboI | GATC | 2 cut(s) | 58, 619 |
| MboII | GAAGA | 8 cut(s) | 68, 92, 161, 203, 331, 409, 442, 447 |
| MluCI | AATT | 3 cut(s) | 171, 534, 559 |
| MroXI | GAANNNNTTC | 1 cut(s) | 416 |
| MspA1I | CMGCKG | 2 cut(s) | 299, 636 |
| MspI | CCGG | 2 cut(s) | 120, 138 |
| MspR9I | CCNGG | 2 cut(s) | 121, 139 |
| MvnI | CGCG | 1 cut(s) | 299 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 182, 185 |
| NciI | CCSGG | 2 cut(s) | 121, 139 |
| NdeII | GATC | 2 cut(s) | 58, 619 |
| NlaIII | CATG | 1 cut(s) | 283 |
| NlaIV | GGNNCC | 2 cut(s) | 114, 640 |
| PceI | AGGCCT | 1 cut(s) | 14 |
| PciSI | GCTCTTC | 1 cut(s) | 186 |
| PdmI | GAANNNNTTC | 1 cut(s) | 416 |
| PfeI | GAWTC | 1 cut(s) | 523 |
| PkrI | GCNGC | 6 cut(s) | 178, 187, 241, 301, 635, 638 |
| PsiI | TTATAA | 1 cut(s) | 659 |
| PspFI | CCCAGC | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 2 cut(s) | 114, 640 |
| PstNI | CAGNNNCTG | 1 cut(s) | 313 |
| RsaI | GTAC | 1 cut(s) | 131 |
| RsaNI | GTAC | 1 cut(s) | 130 |
| SacII | CCGCGG | 1 cut(s) | 300 |
| SapI | GCTCTTC | 1 cut(s) | 186 |
| SatI | GCNGC | 6 cut(s) | 177, 186, 240, 300, 634, 637 |
| Sau3AI | GATC | 2 cut(s) | 58, 619 |
| ScrFI | CCNGG | 2 cut(s) | 121, 139 |
| SetI | ASST | 5 cut(s) | 97, 215, 312, 417, 459 |
| SfaNI | GCATC | 5 cut(s) | 188, 326, 394, 457, 487 |
| SfcI | CTRYAG | 1 cut(s) | 358 |
| Sfr303I | CCGCGG | 1 cut(s) | 300 |
| SgrBI | CCGCGG | 1 cut(s) | 300 |
| SpeI | ACTAGT | 1 cut(s) | 394 |
| Sse9I | AATT | 3 cut(s) | 171, 534, 559 |
| SseBI | AGGCCT | 1 cut(s) | 14 |
| SsiI | CCGC | 4 cut(s) | 239, 297, 299, 636 |
| SspMI | CTAG | 3 cut(s) | 30, 56, 395 |
| StuI | AGGCCT | 1 cut(s) | 14 |
| StyD4I | CCNGG | 2 cut(s) | 119, 137 |
| TaaI | ACNGT | 1 cut(s) | 377 |
| TaiI | ACGT | 1 cut(s) | 459 |
| TaqI | TCGA | 1 cut(s) | 495 |
| TasI | AATT | 3 cut(s) | 171, 534, 559 |
| TauI | GCSGC | 3 cut(s) | 242, 302, 639 |
| TfiI | GAWTC | 1 cut(s) | 523 |
| TscAI | CASTG | 1 cut(s) | 267 |
| TseI | GCWGC | 3 cut(s) | 176, 185, 633 |
| TspDTI | ATGAA | 1 cut(s) | 425 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| TspRI | CASTG | 1 cut(s) | 267 |
| XbaI | TCTAGA | 1 cut(s) | 55 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 241 |
| XmiI | GTMKAC | 1 cut(s) | 221 |
| XmnI | GAANNNNTTC | 1 cut(s) | 416 |
| XspI | CTAG | 3 cut(s) | 30, 56, 395 |