Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 4 - 52 | 4.7e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 5 - 37 | 1.2e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.2e-16 | PPR repeat family |
| PPR | PF01535 | 11 - 41 | 7.5e-07 | PPR repeat |
| PPR_1 | PF12854 | 40 - 71 | 1e-07 | PPR repeat |
| PPR_2 | PF13041 | 55 - 91 | 1.1e-08 | PPR repeat family |
| PPR_1 | PF12854 | 75 - 107 | 1.4e-12 | PPR repeat |
| PPR_2 | PF13041 | 78 - 127 | 1.2e-13 | PPR repeat family |
| PPR | PF01535 | 81 - 110 | 8.5e-09 | PPR repeat |
| PPR_long | PF17177 | 96 - 191 | 3.1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 103 - 161 | 6.3e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 114 - 162 | 7.4e-15 | PPR repeat family |
| PPR_long | PF17177 | 129 - 219 | 1.1e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 136 - 195 | 4e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 146 - 177 | 4.6e-14 | PPR repeat |
| PPR_2 | PF13041 | 148 - 196 | 2.5e-19 | PPR repeat family |
| TPR_24 | PF23276 | 151 - 244 | 1.8e-10 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 151 - 180 | 5.1e-10 | PPR repeat |
| PPR_1 | PF12854 | 180 - 212 | 9e-07 | PPR repeat |
| PPR_2 | PF13041 | 191 - 231 | 3.6e-08 | PPR repeat family |
| PPR_3 | PF13812 | 207 - 256 | 2.9e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 216 - 243 | 5.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 219 - 254 | 5.8e-07 | PPR repeat family |
| PPR_2 | PF13041 | 270 - 306 | 3.6e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 365 |
| AccI | GTMKAC | 1 cut(s) | 954 |
| AciI | CCGC | 2 cut(s) | 1083, 1103 |
| AclI | AACGTT | 1 cut(s) | 532 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcoI | YGGCCR | 1 cut(s) | 538 |
| AcuI | CTGAAG | 1 cut(s) | 127 |
| AfaI | GTAC | 3 cut(s) | 10, 355, 753 |
| AgsI | TTSAA | 6 cut(s) | 53, 100, 218, 230, 683, 745 |
| AjnI | CCWGG | 2 cut(s) | 22, 1056 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 912, 944 |
| AluBI | AGCT | 5 cut(s) | 86, 514, 698, 962, 1118 |
| AluI | AGCT | 5 cut(s) | 86, 514, 698, 962, 1118 |
| Alw26I | GTCTC | 1 cut(s) | 859 |
| AlwI | GGATC | 1 cut(s) | 152 |
| AoxI | GGCC | 2 cut(s) | 70, 538 |
| ApeKI | GCWGC | 1 cut(s) | 1010 |
| AspS9I | GGNCC | 1 cut(s) | 807 |
| AsuHPI | GGTGA | 2 cut(s) | 121, 130 |
| AsuII | TTCGAA | 1 cut(s) | 1039 |
| AvaII | GGWCC | 1 cut(s) | 807 |
| BalI | TGGCCA | 1 cut(s) | 540 |
| BanII | GRGCYC | 1 cut(s) | 332 |
| BbsI | GAAGAC | 2 cut(s) | 127, 718 |
| BbvI | GCAGC | 1 cut(s) | 997 |
| BccI | CCATC | 4 cut(s) | 172, 257, 280, 794 |
| BceAI | ACGGC | 1 cut(s) | 960 |
| BciT130I | CCWGG | 2 cut(s) | 24, 1058 |
| BcoDI | GTCTC | 1 cut(s) | 859 |
| BfaI | CTAG | 1 cut(s) | 699 |
| BfmI | CTRYAG | 2 cut(s) | 612, 900 |
| BisI | GCNGC | 2 cut(s) | 1011, 1083 |
| BlsI | GCNGC | 2 cut(s) | 1012, 1084 |
| Bme1390I | CCNGG | 2 cut(s) | 24, 1058 |
| Bme18I | GGWCC | 1 cut(s) | 807 |
| BmgT120I | GGNCC | 1 cut(s) | 807 |
| BmiI | GGNNCC | 1 cut(s) | 331 |
| BmrFI | CCNGG | 2 cut(s) | 24, 1058 |
| BmrI | ACTGGG | 1 cut(s) | 1081 |
| BmsI | GCATC | 7 cut(s) | 433, 516, 568, 860, 895, 917, 997 |
| BmuI | ACTGGG | 1 cut(s) | 1081 |
| BpiI | GAAGAC | 2 cut(s) | 127, 718 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 713, 745 |
| BpmI | CTGGAG | 2 cut(s) | 6, 780 |
| Bpu14I | TTCGAA | 1 cut(s) | 1039 |
| BsaJI | CCNNGG | 2 cut(s) | 333, 826 |
| Bse1I | ACTGG | 3 cut(s) | 73, 657, 1087 |
| BseBI | CCWGG | 2 cut(s) | 24, 1058 |
| BseDI | CCNNGG | 2 cut(s) | 333, 826 |
| BseGI | GGATG | 4 cut(s) | 183, 268, 544, 1012 |
| BseMII | CTCAG | 2 cut(s) | 536, 758 |
| BseNI | ACTGG | 3 cut(s) | 73, 657, 1087 |
| BseRI | GAGGAG | 1 cut(s) | 294 |
| BseXI | GCAGC | 1 cut(s) | 997 |
| BseYI | CCCAGC | 1 cut(s) | 958 |
| BshFI | GGCC | 2 cut(s) | 72, 540 |
| BsmAI | GTCTC | 1 cut(s) | 859 |
| BsnI | GGCC | 2 cut(s) | 72, 540 |
| Bsp119I | TTCGAA | 1 cut(s) | 1039 |
| Bsp1286I | GDGCHC | 1 cut(s) | 332 |
| Bsp1407I | TGTACA | 1 cut(s) | 751 |
| Bsp143I | GATC | 1 cut(s) | 157 |
| Bsp19I | CCATGG | 1 cut(s) | 333 |
| BspACI | CCGC | 2 cut(s) | 1083, 1103 |
| BspANI | GGCC | 2 cut(s) | 72, 540 |
| BspCNI | CTCAG | 2 cut(s) | 535, 759 |
| BspHI | TCATGA | 1 cut(s) | 1096 |
| BspLI | GGNNCC | 1 cut(s) | 331 |
| BspMAI | CTGCAG | 1 cut(s) | 904 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BspT104I | TTCGAA | 1 cut(s) | 1039 |
| BsrGI | TGTACA | 1 cut(s) | 751 |
| BsrI | ACTGG | 3 cut(s) | 73, 657, 1087 |
| BssECI | CCNNGG | 2 cut(s) | 333, 826 |
| BssMI | GATC | 1 cut(s) | 157 |
| BssT1I | CCWWGG | 1 cut(s) | 333 |
| Bst2UI | CCWGG | 2 cut(s) | 24, 1058 |
| Bst4CI | ACNGT | 6 cut(s) | 199, 251, 272, 451, 568, 671 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstAUI | TGTACA | 1 cut(s) | 751 |
| BstBI | TTCGAA | 1 cut(s) | 1039 |
| BstDEI | CTNAG | 4 cut(s) | 522, 606, 623, 767 |
| BstDSI | CCRYGG | 1 cut(s) | 333 |
| BstF5I | GGATG | 4 cut(s) | 183, 268, 544, 1012 |
| BstKTI | GATC | 1 cut(s) | 160 |
| BstMAI | GTCTC | 1 cut(s) | 859 |
| BstMBI | GATC | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 69, 857, 1115 |
| BstNI | CCWGG | 2 cut(s) | 24, 1058 |
| BstSCI | CCNGG | 2 cut(s) | 22, 1056 |
| BstSFI | CTRYAG | 2 cut(s) | 612, 900 |
| BstV1I | GCAGC | 1 cut(s) | 997 |
| BstV2I | GAAGAC | 2 cut(s) | 127, 718 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 199, 804 |
| BsuRI | GGCC | 2 cut(s) | 72, 540 |
| BtgI | CCRYGG | 1 cut(s) | 333 |
| BtsCI | GGATG | 4 cut(s) | 183, 268, 544, 1012 |
| BtsIMutI | CAGTG | 4 cut(s) | 80, 151, 353, 564 |
| CciI | TCATGA | 1 cut(s) | 1096 |
| Cfr13I | GGNCC | 1 cut(s) | 807 |
| CseI | GACGC | 1 cut(s) | 857 |
| Csp6I | GTAC | 3 cut(s) | 9, 354, 752 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 451, 486 |
| CviAII | CATG | 3 cut(s) | 208, 334, 1097 |
| CviQI | GTAC | 3 cut(s) | 9, 354, 752 |
| DdeI | CTNAG | 4 cut(s) | 522, 606, 623, 767 |
| DpnI | GATC | 1 cut(s) | 159 |
| DpnII | GATC | 1 cut(s) | 157 |
| EaeI | YGGCCR | 1 cut(s) | 538 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| Eco130I | CCWWGG | 1 cut(s) | 333 |
| Eco24I | GRGCYC | 1 cut(s) | 332 |
| Eco47I | GGWCC | 1 cut(s) | 807 |
| Eco57I | CTGAAG | 1 cut(s) | 127 |
| EcoRII | CCWGG | 2 cut(s) | 22, 1056 |
| EcoT14I | CCWWGG | 1 cut(s) | 333 |
| EcoT22I | ATGCAT | 2 cut(s) | 426, 910 |
| EcoT38I | GRGCYC | 1 cut(s) | 332 |
| ErhI | CCWWGG | 1 cut(s) | 333 |
| FaeI | CATG | 3 cut(s) | 211, 337, 1100 |
| FatI | CATG | 3 cut(s) | 207, 333, 1096 |
| FauI | CCCGC | 1 cut(s) | 1096 |
| FblI | GTMKAC | 1 cut(s) | 954 |
| Fnu4HI | GCNGC | 2 cut(s) | 1011, 1083 |
| FokI | GGATG | 4 cut(s) | 190, 275, 531, 1019 |
| FriOI | GRGCYC | 1 cut(s) | 332 |
| Fsp4HI | GCNGC | 2 cut(s) | 1011, 1083 |
| FspBI | CTAG | 1 cut(s) | 699 |
| GluI | GCNGC | 2 cut(s) | 1011, 1083 |
| GsaI | CCCAGC | 1 cut(s) | 962 |
| GsuI | CTGGAG | 2 cut(s) | 6, 780 |
| HaeIII | GGCC | 2 cut(s) | 72, 540 |
| HgaI | GACGC | 1 cut(s) | 857 |
| Hin1II | CATG | 3 cut(s) | 211, 337, 1100 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 6 cut(s) | 49, 112, 214, 710, 887, 1024 |
| HphI | GGTGA | 2 cut(s) | 121, 130 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 752, 955 |
| Hpy188I | TCNGA | 2 cut(s) | 525, 827 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 797, 875, 1028, 1097 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 752, 955 |
| HpyAV | CCTTC | 4 cut(s) | 151, 628, 677, 1035 |
| HpyCH4III | ACNGT | 6 cut(s) | 199, 251, 272, 451, 568, 671 |
| HpyCH4IV | ACGT | 1 cut(s) | 532 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 69, 857, 1115 |
| HpyF3I | CTNAG | 4 cut(s) | 522, 606, 623, 767 |
| HpySE526I | ACGT | 1 cut(s) | 532 |
| Hsp92II | CATG | 3 cut(s) | 211, 337, 1100 |
| Kzo9I | GATC | 1 cut(s) | 157 |
| LmnI | GCTCC | 2 cut(s) | 25, 335 |
| Lsp1109I | GCAGC | 1 cut(s) | 997 |
| LweI | GCATC | 7 cut(s) | 433, 516, 568, 860, 895, 917, 997 |
| MaeI | CTAG | 1 cut(s) | 699 |
| MaeII | ACGT | 1 cut(s) | 532 |
| MaeIII | GTNAC | 4 cut(s) | 31, 241, 266, 451 |
| MalI | GATC | 1 cut(s) | 159 |
| MboI | GATC | 1 cut(s) | 157 |
| MboII | GAAGA | 3 cut(s) | 127, 407, 718 |
| MhlI | GDGCHC | 1 cut(s) | 332 |
| MlsI | TGGCCA | 1 cut(s) | 540 |
| MluCI | AATT | 5 cut(s) | 64, 617, 663, 760, 920 |
| MluNI | TGGCCA | 1 cut(s) | 540 |
| MlyI | GAGTC | 1 cut(s) | 121 |
| MmeI | TCCRAC | 2 cut(s) | 627, 785 |
| Mox20I | TGGCCA | 1 cut(s) | 540 |
| Mph1103I | ATGCAT | 2 cut(s) | 426, 910 |
| MscI | TGGCCA | 1 cut(s) | 540 |
| MseI | TTAA | 3 cut(s) | 314, 339, 836 |
| Msp20I | TGGCCA | 1 cut(s) | 540 |
| MspR9I | CCNGG | 2 cut(s) | 24, 1058 |
| MvaI | CCWGG | 2 cut(s) | 24, 1058 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 69, 857, 1115 |
| NcoI | CCATGG | 1 cut(s) | 333 |
| NdeII | GATC | 1 cut(s) | 157 |
| NlaIII | CATG | 3 cut(s) | 211, 337, 1100 |
| NlaIV | GGNNCC | 1 cut(s) | 331 |
| NsiI | ATGCAT | 2 cut(s) | 426, 910 |
| NspV | TTCGAA | 1 cut(s) | 1039 |
| PagI | TCATGA | 1 cut(s) | 1096 |
| PfeI | GAWTC | 5 cut(s) | 49, 214, 710, 887, 1024 |
| PkrI | GCNGC | 2 cut(s) | 1012, 1084 |
| PleI | GAGTC | 1 cut(s) | 120 |
| PpsI | GAGTC | 1 cut(s) | 120 |
| PsiI | TTATAA | 1 cut(s) | 365 |
| Psp1406I | AACGTT | 1 cut(s) | 532 |
| Psp6I | CCWGG | 2 cut(s) | 22, 1056 |
| PspFI | CCCAGC | 1 cut(s) | 958 |
| PspGI | CCWGG | 2 cut(s) | 22, 1056 |
| PspN4I | GGNNCC | 1 cut(s) | 331 |
| PspPI | GGNCC | 1 cut(s) | 807 |
| PstI | CTGCAG | 1 cut(s) | 904 |
| RsaI | GTAC | 3 cut(s) | 10, 355, 753 |
| RsaNI | GTAC | 3 cut(s) | 9, 354, 752 |
| SaqAI | TTAA | 3 cut(s) | 314, 339, 836 |
| SatI | GCNGC | 2 cut(s) | 1011, 1083 |
| Sau3AI | GATC | 1 cut(s) | 157 |
| Sau96I | GGNCC | 1 cut(s) | 807 |
| SchI | GAGTC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 24, 1058 |
| SduI | GDGCHC | 1 cut(s) | 332 |
| SfaNI | GCATC | 7 cut(s) | 433, 516, 568, 860, 895, 917, 997 |
| SfcI | CTRYAG | 2 cut(s) | 612, 900 |
| SfuI | TTCGAA | 1 cut(s) | 1039 |
| SinI | GGWCC | 1 cut(s) | 807 |
| Sse9I | AATT | 5 cut(s) | 64, 617, 663, 760, 920 |
| SsiI | CCGC | 2 cut(s) | 1083, 1103 |
| SspMI | CTAG | 1 cut(s) | 699 |
| StyD4I | CCNGG | 2 cut(s) | 22, 1056 |
| StyI | CCWWGG | 1 cut(s) | 333 |
| TaaI | ACNGT | 6 cut(s) | 199, 251, 272, 451, 568, 671 |
| TaiI | ACGT | 1 cut(s) | 535 |
| TaqI | TCGA | 2 cut(s) | 393, 1039 |
| TasI | AATT | 5 cut(s) | 64, 617, 663, 760, 920 |
| TatI | WGTACW | 1 cut(s) | 751 |
| TauI | GCSGC | 1 cut(s) | 1085 |
| TfiI | GAWTC | 5 cut(s) | 49, 214, 710, 887, 1024 |
| Tru1I | TTAA | 3 cut(s) | 314, 339, 836 |
| Tru9I | TTAA | 3 cut(s) | 314, 339, 836 |
| TscAI | CASTG | 4 cut(s) | 80, 151, 353, 571 |
| TseI | GCWGC | 1 cut(s) | 1010 |
| TspDTI | ATGAA | 6 cut(s) | 117, 446, 545, 647, 1001, 1085 |
| TspRI | CASTG | 4 cut(s) | 80, 151, 353, 571 |
| VpaK11BI | GGWCC | 1 cut(s) | 807 |
| XmiI | GTMKAC | 1 cut(s) | 954 |
| XspI | CTAG | 1 cut(s) | 699 |
| Zsp2I | ATGCAT | 2 cut(s) | 426, 910 |