Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_24 | PF23276 | 5 - 86 | 7.8e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 15 - 48 | 4.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 19 - 68 | 1.9e-13 | PPR repeat family |
| PPR | PF01535 | 22 - 51 | 1.2e-08 | PPR repeat |
| PPR_3 | PF13812 | 43 - 98 | 9.9e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 55 - 103 | 1.7e-14 | PPR repeat family |
| PPR_long | PF17177 | 70 - 181 | 3.2e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 81 - 136 | 2.1e-07 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 84 - 183 | 9.5e-11 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 86 - 118 | 5.7e-14 | PPR repeat |
| PPR_2 | PF13041 | 89 - 137 | 4.7e-18 | PPR repeat family |
| PPR | PF01535 | 92 - 121 | 4e-09 | PPR repeat |
| PPR_1 | PF12854 | 121 - 153 | 1e-06 | PPR repeat |
| PPR_1 | PF12854 | 157 - 177 | 1.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 160 - 208 | 4.7e-16 | PPR repeat family |
| PPR_3 | PF13812 | 187 - 241 | 3.2e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 190 - 223 | 4.7e-10 | PPR repeat |
| PPR_2 | PF13041 | 201 - 242 | 1.3e-09 | PPR repeat family |
| PPR_1 | PF12854 | 225 - 257 | 4.7e-06 | PPR repeat |
| PPR_2 | PF13041 | 229 - 274 | 1.1e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 839 |
| AcsI | RAATTY | 1 cut(s) | 649 |
| AfaI | GTAC | 1 cut(s) | 697 |
| AgsI | TTSAA | 5 cut(s) | 41, 53, 238, 506, 764 |
| AjiI | CACGTC | 1 cut(s) | 7 |
| AjnI | CCWGG | 2 cut(s) | 55, 847 |
| AluBI | AGCT | 2 cut(s) | 337, 521 |
| AluI | AGCT | 2 cut(s) | 337, 521 |
| Alw26I | GTCTC | 2 cut(s) | 731, 748 |
| AlwI | GGATC | 1 cut(s) | 839 |
| ApoI | RAATTY | 1 cut(s) | 649 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 261, 651 |
| AspLEI | GCGC | 1 cut(s) | 632 |
| AsuII | TTCGAA | 1 cut(s) | 379 |
| AxyI | CCTNAGG | 1 cut(s) | 429 |
| BanII | GRGCYC | 1 cut(s) | 155 |
| BccI | CCATC | 2 cut(s) | 80, 290 |
| BciT130I | CCWGG | 2 cut(s) | 57, 849 |
| BclI | TGATCA | 1 cut(s) | 217 |
| BcoDI | GTCTC | 2 cut(s) | 731, 748 |
| BfaI | CTAG | 1 cut(s) | 476 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BglII | AGATCT | 1 cut(s) | 544 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 849 |
| BmgBI | CACGTC | 1 cut(s) | 7 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmrFI | CCNGG | 2 cut(s) | 57, 849 |
| BmsI | GCATC | 3 cut(s) | 339, 391, 784 |
| BpmI | CTGGAG | 1 cut(s) | 543 |
| Bpu14I | TTCGAA | 1 cut(s) | 379 |
| BpuEI | CTTGAG | 1 cut(s) | 794 |
| BsaJI | CCNNGG | 2 cut(s) | 156, 715 |
| Bse21I | CCTNAGG | 1 cut(s) | 429 |
| Bse3DI | GCAATG | 1 cut(s) | 860 |
| BseBI | CCWGG | 2 cut(s) | 57, 849 |
| BseDI | CCNNGG | 2 cut(s) | 156, 715 |
| BseGI | GGATG | 2 cut(s) | 91, 367 |
| BseMI | GCAATG | 1 cut(s) | 860 |
| BseMII | CTCAG | 1 cut(s) | 359 |
| BsmAI | GTCTC | 2 cut(s) | 731, 748 |
| Bsp119I | TTCGAA | 1 cut(s) | 379 |
| Bsp1286I | GDGCHC | 1 cut(s) | 155 |
| Bsp143I | GATC | 4 cut(s) | 133, 217, 544, 844 |
| Bsp19I | CCATGG | 1 cut(s) | 156 |
| BspCNI | CTCAG | 1 cut(s) | 358 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspMAI | CTGCAG | 1 cut(s) | 793 |
| BspPI | GGATC | 1 cut(s) | 839 |
| BspQI | GCTCTTC | 2 cut(s) | 344, 685 |
| BspT104I | TTCGAA | 1 cut(s) | 379 |
| BsrDI | GCAATG | 1 cut(s) | 860 |
| BssECI | CCNNGG | 2 cut(s) | 156, 715 |
| BssMI | GATC | 4 cut(s) | 133, 217, 544, 844 |
| BssT1I | CCWWGG | 1 cut(s) | 156 |
| Bst2UI | CCWGG | 2 cut(s) | 57, 849 |
| Bst4CI | ACNGT | 4 cut(s) | 22, 74, 95, 274 |
| Bst6I | CTCTTC | 4 cut(s) | 294, 344, 554, 685 |
| BstBI | TTCGAA | 1 cut(s) | 379 |
| BstDEI | CTNAG | 3 cut(s) | 345, 429, 656 |
| BstDSI | CCRYGG | 1 cut(s) | 156 |
| BstF5I | GGATG | 2 cut(s) | 91, 367 |
| BstHHI | GCGC | 1 cut(s) | 632 |
| BstKTI | GATC | 4 cut(s) | 136, 220, 547, 847 |
| BstMAI | GTCTC | 2 cut(s) | 731, 748 |
| BstMBI | GATC | 4 cut(s) | 133, 217, 544, 844 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 627 |
| BstNI | CCWGG | 2 cut(s) | 57, 849 |
| BstSCI | CCNGG | 2 cut(s) | 55, 847 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstX2I | RGATCY | 2 cut(s) | 544, 844 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 22 |
| BstYI | RGATCY | 2 cut(s) | 544, 844 |
| Bsu36I | CCTNAGG | 1 cut(s) | 429 |
| BtgI | CCRYGG | 1 cut(s) | 156 |
| BtgZI | GCGATG | 1 cut(s) | 44 |
| BtrI | CACGTC | 1 cut(s) | 7 |
| BtsCI | GGATG | 2 cut(s) | 91, 367 |
| CfoI | GCGC | 1 cut(s) | 632 |
| CseI | GACGC | 2 cut(s) | 236, 786 |
| Csp6I | GTAC | 1 cut(s) | 696 |
| CviAII | CATG | 1 cut(s) | 157 |
| CviJI | RGCY | 9 cut(s) | 14, 153, 224, 337, 357, 521, 580, 678, 749 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 153, 224, 337, 357, 521, 580, 678, 749 |
| CviQI | GTAC | 1 cut(s) | 696 |
| DdeI | CTNAG | 3 cut(s) | 345, 429, 656 |
| DpnI | GATC | 4 cut(s) | 135, 219, 546, 846 |
| DpnII | GATC | 4 cut(s) | 133, 217, 544, 844 |
| Eam1104I | CTCTTC | 4 cut(s) | 294, 344, 554, 685 |
| EarI | CTCTTC | 4 cut(s) | 294, 344, 554, 685 |
| Eco130I | CCWWGG | 1 cut(s) | 156 |
| Eco24I | GRGCYC | 1 cut(s) | 155 |
| Eco81I | CCTNAGG | 1 cut(s) | 429 |
| EcoRII | CCWGG | 2 cut(s) | 55, 847 |
| EcoT14I | CCWWGG | 1 cut(s) | 156 |
| EcoT38I | GRGCYC | 1 cut(s) | 155 |
| ErhI | CCWWGG | 1 cut(s) | 156 |
| FaeI | CATG | 1 cut(s) | 160 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 756, 788 |
| FatI | CATG | 1 cut(s) | 156 |
| FauNDI | CATATG | 1 cut(s) | 595 |
| FbaI | TGATCA | 1 cut(s) | 217 |
| FokI | GGATG | 2 cut(s) | 98, 354 |
| FriOI | GRGCYC | 1 cut(s) | 155 |
| FspBI | CTAG | 1 cut(s) | 476 |
| GlaI | GCGC | 1 cut(s) | 631 |
| GsuI | CTGGAG | 1 cut(s) | 543 |
| HgaI | GACGC | 2 cut(s) | 236, 786 |
| HhaI | GCGC | 1 cut(s) | 632 |
| Hin1II | CATG | 1 cut(s) | 160 |
| Hin6I | GCGC | 1 cut(s) | 630 |
| HinP1I | GCGC | 1 cut(s) | 630 |
| HincII | GTYRAC | 2 cut(s) | 365, 801 |
| HindII | GTYRAC | 2 cut(s) | 365, 801 |
| HinfI | GANTC | 2 cut(s) | 37, 872 |
| Hpy166II | GTNNAC | 3 cut(s) | 365, 614, 801 |
| Hpy188I | TCNGA | 5 cut(s) | 171, 348, 716, 832, 881 |
| Hpy188III | TCNNGA | 2 cut(s) | 293, 764 |
| Hpy8I | GTNNAC | 3 cut(s) | 365, 614, 801 |
| Hpy99I | CGWCG | 1 cut(s) | 252 |
| HpyAV | CCTTC | 2 cut(s) | 451, 500 |
| HpyCH4III | ACNGT | 4 cut(s) | 22, 74, 95, 274 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 7 cut(s) | 100, 201, 306, 352, 516, 621, 791 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 627 |
| HpyF3I | CTNAG | 3 cut(s) | 345, 429, 656 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92II | CATG | 1 cut(s) | 160 |
| HspAI | GCGC | 1 cut(s) | 630 |
| Ksp22I | TGATCA | 1 cut(s) | 217 |
| Kzo9I | GATC | 4 cut(s) | 133, 217, 544, 844 |
| LguI | GCTCTTC | 2 cut(s) | 344, 685 |
| LmnI | GCTCC | 1 cut(s) | 158 |
| LpnPI | CCDG | 9 cut(s) | 42, 69, 86, 206, 431, 507, 594, 834, 861 |
| LweI | GCATC | 3 cut(s) | 339, 391, 784 |
| MaeI | CTAG | 1 cut(s) | 476 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MaeIII | GTNAC | 2 cut(s) | 89, 274 |
| MalI | GATC | 4 cut(s) | 135, 219, 546, 846 |
| MboI | GATC | 4 cut(s) | 133, 217, 544, 844 |
| MboII | GAAGA | 4 cut(s) | 281, 331, 541, 672 |
| MflI | RGATCY | 2 cut(s) | 544, 844 |
| MhlI | GDGCHC | 1 cut(s) | 155 |
| MluCI | AATT | 5 cut(s) | 48, 440, 649, 708, 809 |
| MmeI | TCCRAC | 1 cut(s) | 450 |
| MnlI | CCTC | 7 cut(s) | 38, 109, 620, 653, 710, 771, 826 |
| MroXI | GAANNNNTTC | 2 cut(s) | 261, 651 |
| MseI | TTAA | 3 cut(s) | 189, 635, 867 |
| MslI | CAYNNNNRTG | 2 cut(s) | 372, 452 |
| MspR9I | CCNGG | 2 cut(s) | 57, 849 |
| MvaI | CCWGG | 2 cut(s) | 57, 849 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 627 |
| NcoI | CCATGG | 1 cut(s) | 156 |
| NdeI | CATATG | 1 cut(s) | 595 |
| NdeII | GATC | 4 cut(s) | 133, 217, 544, 844 |
| NlaIII | CATG | 1 cut(s) | 160 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NspV | TTCGAA | 1 cut(s) | 379 |
| PciSI | GCTCTTC | 2 cut(s) | 344, 685 |
| PdmI | GAANNNNTTC | 2 cut(s) | 261, 651 |
| PfeI | GAWTC | 2 cut(s) | 37, 872 |
| Psp6I | CCWGG | 2 cut(s) | 55, 847 |
| PspGI | CCWGG | 2 cut(s) | 55, 847 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PstI | CTGCAG | 1 cut(s) | 793 |
| PsuI | RGATCY | 2 cut(s) | 544, 844 |
| RsaI | GTAC | 1 cut(s) | 697 |
| RsaNI | GTAC | 1 cut(s) | 696 |
| RseI | CAYNNNNRTG | 2 cut(s) | 372, 452 |
| SapI | GCTCTTC | 2 cut(s) | 344, 685 |
| SaqAI | TTAA | 3 cut(s) | 189, 635, 867 |
| Sau3AI | GATC | 4 cut(s) | 133, 217, 544, 844 |
| ScrFI | CCNGG | 2 cut(s) | 57, 849 |
| SduI | GDGCHC | 1 cut(s) | 155 |
| SetI | ASST | 7 cut(s) | 9, 58, 339, 511, 523, 701, 721 |
| SfaNI | GCATC | 3 cut(s) | 339, 391, 784 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SfuI | TTCGAA | 1 cut(s) | 379 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 372, 452 |
| SmlI | CTYRAG | 1 cut(s) | 773 |
| SmoI | CTYRAG | 1 cut(s) | 773 |
| Sse9I | AATT | 5 cut(s) | 48, 440, 649, 708, 809 |
| SspI | AATATT | 1 cut(s) | 496 |
| SspMI | CTAG | 1 cut(s) | 476 |
| StyD4I | CCNGG | 2 cut(s) | 55, 847 |
| StyI | CCWWGG | 1 cut(s) | 156 |
| TaaI | ACNGT | 4 cut(s) | 22, 74, 95, 274 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqI | TCGA | 1 cut(s) | 379 |
| TasI | AATT | 5 cut(s) | 48, 440, 649, 708, 809 |
| TfiI | GAWTC | 2 cut(s) | 37, 872 |
| Tru1I | TTAA | 3 cut(s) | 189, 635, 867 |
| Tru9I | TTAA | 3 cut(s) | 189, 635, 867 |
| TspDTI | ATGAA | 1 cut(s) | 470 |
| TspGWI | ACGGA | 1 cut(s) | 207 |
| XapI | RAATTY | 1 cut(s) | 649 |
| XmnI | GAANNNNTTC | 2 cut(s) | 261, 651 |
| XspI | CTAG | 1 cut(s) | 476 |