Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 22 | 1e-05 | PPR repeat family |
| PPR_3 | PF13812 | 1 - 56 | 9.4e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 37 | 2e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1e-13 | PPR repeat family |
| PPR_1 | PF12854 | 40 - 71 | 2.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 43 - 91 | 5e-14 | PPR repeat family |
| PPR_3 | PF13812 | 67 - 125 | 3.3e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 74 - 105 | 7.4e-12 | PPR repeat |
| PPR_2 | PF13041 | 78 - 127 | 5.9e-16 | PPR repeat family |
| PPR | PF01535 | 81 - 111 | 5.1e-07 | PPR repeat |
| PPR_1 | PF12854 | 110 - 141 | 7.7e-08 | PPR repeat |
| PPR | PF01535 | 117 - 146 | 3.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 121 - 150 | 3.1e-06 | PPR repeat family |
| PPR_3 | PF13812 | 137 - 193 | 4.3e-08 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 142 - 245 | 1e-09 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 144 - 177 | 1.3e-13 | PPR repeat |
| PPR_2 | PF13041 | 148 - 197 | 1.1e-19 | PPR repeat family |
| PPR | PF01535 | 151 - 180 | 4.4e-08 | PPR repeat |
| PPR_1 | PF12854 | 180 - 212 | 3.4e-09 | PPR repeat |
| PPR | PF01535 | 187 - 215 | 6.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 191 - 232 | 6.2e-13 | PPR repeat family |
| PPR_3 | PF13812 | 207 - 265 | 1.2e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 217 - 244 | 7e-09 | PPR repeat |
| PPR_2 | PF13041 | 219 - 267 | 7.6e-19 | PPR repeat family |
| PPR | PF01535 | 221 - 251 | 1.7e-06 | PPR repeat |
| PPR_1 | PF12854 | 249 - 282 | 4.6e-11 | PPR repeat |
| PPR | PF01535 | 257 - 285 | 9.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 259 - 300 | 2.4e-10 | PPR repeat family |
| PPR_1 | PF12854 | 284 - 317 | 7.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 291 - 332 | 7.3e-09 | PPR repeat family |
| PPR | PF01535 | 292 - 321 | 2.6e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 459 |
| AciI | CCGC | 3 cut(s) | 926, 983, 1052 |
| AclWI | GGATC | 1 cut(s) | 729 |
| AcuI | CTGAAG | 1 cut(s) | 1029 |
| AfaI | GTAC | 2 cut(s) | 137, 878 |
| AflIII | ACRYGT | 1 cut(s) | 812 |
| AgsI | TTSAA | 9 cut(s) | 100, 218, 311, 617, 683, 710, 755, 904, 941 |
| AluBI | AGCT | 3 cut(s) | 382, 533, 698 |
| AluI | AGCT | 3 cut(s) | 382, 533, 698 |
| Alw26I | GTCTC | 1 cut(s) | 429 |
| AlwI | GGATC | 1 cut(s) | 729 |
| Ama87I | CYCGRG | 1 cut(s) | 605 |
| AoxI | GGCC | 2 cut(s) | 538, 580 |
| AspS9I | GGNCC | 1 cut(s) | 181 |
| AsuC2I | CCSGG | 1 cut(s) | 403 |
| AsuHPI | GGTGA | 2 cut(s) | 121, 940 |
| AvaI | CYCGRG | 1 cut(s) | 605 |
| AvaII | GGWCC | 1 cut(s) | 181 |
| BccI | CCATC | 5 cut(s) | 257, 467, 481, 572, 625 |
| BceAI | ACGGC | 1 cut(s) | 385 |
| BciVI | GTATCC | 1 cut(s) | 399 |
| BcnI | CCSGG | 1 cut(s) | 403 |
| BcoDI | GTCTC | 1 cut(s) | 429 |
| BfmI | CTRYAG | 1 cut(s) | 966 |
| BfuI | GTATCC | 1 cut(s) | 399 |
| BglII | AGATCT | 1 cut(s) | 1021 |
| Bme1390I | CCNGG | 1 cut(s) | 403 |
| Bme18I | GGWCC | 1 cut(s) | 181 |
| BmeT110I | CYCGRG | 1 cut(s) | 605 |
| BmgT120I | GGNCC | 1 cut(s) | 181 |
| BmrFI | CCNGG | 1 cut(s) | 403 |
| BmsI | GCATC | 5 cut(s) | 320, 388, 493, 961, 983 |
| Bpu10I | CCTNAGC | 1 cut(s) | 833 |
| BpuMI | CCSGG | 1 cut(s) | 403 |
| BsaAI | YACGTR | 1 cut(s) | 876 |
| BsaJI | CCNNGG | 2 cut(s) | 606, 892 |
| Bse1I | ACTGG | 1 cut(s) | 579 |
| BseDI | CCNNGG | 2 cut(s) | 606, 892 |
| BseGI | GGATG | 3 cut(s) | 268, 335, 583 |
| BseNI | ACTGG | 1 cut(s) | 579 |
| BseRI | GAGGAG | 1 cut(s) | 294 |
| BsgI | GTGCAG | 1 cut(s) | 712 |
| BshFI | GGCC | 2 cut(s) | 540, 582 |
| BsiHKCI | CYCGRG | 1 cut(s) | 605 |
| BsiSI | CCGG | 1 cut(s) | 403 |
| BsmAI | GTCTC | 1 cut(s) | 429 |
| BsnI | GGCC | 2 cut(s) | 540, 582 |
| BsoBI | CYCGRG | 1 cut(s) | 605 |
| Bsp1407I | TGTACA | 1 cut(s) | 135 |
| Bsp143I | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| BspACI | CCGC | 3 cut(s) | 926, 983, 1052 |
| BspANI | GGCC | 2 cut(s) | 540, 582 |
| BspMAI | CTGCAG | 1 cut(s) | 970 |
| BspPI | GGATC | 1 cut(s) | 729 |
| BsrGI | TGTACA | 1 cut(s) | 135 |
| BsrI | ACTGG | 1 cut(s) | 579 |
| BssECI | CCNNGG | 2 cut(s) | 606, 892 |
| BssMI | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| Bst6I | CTCTTC | 2 cut(s) | 306, 840 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 330, 980 |
| BstAUI | TGTACA | 1 cut(s) | 135 |
| BstBAI | YACGTR | 1 cut(s) | 876 |
| BstC8I | GCNNGC | 1 cut(s) | 531 |
| BstDEI | CTNAG | 1 cut(s) | 833 |
| BstF5I | GGATG | 3 cut(s) | 268, 335, 583 |
| BstKTI | GATC | 4 cut(s) | 204, 724, 993, 1024 |
| BstMAI | GTCTC | 1 cut(s) | 429 |
| BstMBI | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 330, 980, 1034 |
| BstNSI | RCATGY | 1 cut(s) | 816 |
| BstSCI | CCNGG | 1 cut(s) | 401 |
| BstSFI | CTRYAG | 1 cut(s) | 966 |
| BstX2I | RGATCY | 2 cut(s) | 721, 1021 |
| BstYI | RGATCY | 2 cut(s) | 721, 1021 |
| BsuI | GTATCC | 1 cut(s) | 399 |
| BsuRI | GGCC | 2 cut(s) | 540, 582 |
| BtsCI | GGATG | 3 cut(s) | 268, 335, 583 |
| Cac8I | GCNNGC | 1 cut(s) | 531 |
| Cfr13I | GGNCC | 1 cut(s) | 181 |
| Csp6I | GTAC | 2 cut(s) | 136, 877 |
| CviAII | CATG | 4 cut(s) | 53, 334, 717, 813 |
| CviJI | RGCY | 8 cut(s) | 372, 382, 533, 540, 582, 698, 808, 934 |
| CviKI_1 | RGCY | 8 cut(s) | 372, 382, 533, 540, 582, 698, 808, 934 |
| CviQI | GTAC | 2 cut(s) | 136, 877 |
| DdeI | CTNAG | 1 cut(s) | 833 |
| DpnI | GATC | 4 cut(s) | 203, 723, 992, 1023 |
| DpnII | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| Eam1104I | CTCTTC | 2 cut(s) | 306, 840 |
| EarI | CTCTTC | 2 cut(s) | 306, 840 |
| Eco47I | GGWCC | 1 cut(s) | 181 |
| Eco57I | CTGAAG | 1 cut(s) | 1029 |
| Eco88I | CYCGRG | 1 cut(s) | 605 |
| EcoT22I | ATGCAT | 3 cut(s) | 335, 718, 976 |
| FaeI | CATG | 4 cut(s) | 56, 337, 720, 816 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1008, 1040 |
| FatI | CATG | 4 cut(s) | 52, 333, 716, 812 |
| FokI | GGATG | 3 cut(s) | 275, 342, 590 |
| HaeIII | GGCC | 2 cut(s) | 540, 582 |
| HapII | CCGG | 1 cut(s) | 403 |
| Hin1II | CATG | 4 cut(s) | 56, 337, 720, 816 |
| HindIII | AAGCTT | 2 cut(s) | 380, 531 |
| HinfI | GANTC | 2 cut(s) | 49, 214 |
| HpaII | CCGG | 1 cut(s) | 403 |
| HphI | GGTGA | 2 cut(s) | 121, 940 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 136 |
| Hpy188I | TCNGA | 3 cut(s) | 732, 893, 1009 |
| Hpy188III | TCNNGA | 4 cut(s) | 31, 416, 605, 941 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 136 |
| HpyCH4IV | ACGT | 1 cut(s) | 875 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 330, 980, 1034 |
| HpyF3I | CTNAG | 1 cut(s) | 833 |
| HpySE526I | ACGT | 1 cut(s) | 875 |
| Hsp92II | CATG | 4 cut(s) | 56, 337, 720, 816 |
| Kzo9I | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| LmnI | GCTCC | 1 cut(s) | 195 |
| LpnPI | CCDG | 9 cut(s) | 36, 56, 246, 312, 401, 416, 560, 751, 771 |
| LweI | GCATC | 5 cut(s) | 320, 388, 493, 961, 983 |
| MaeII | ACGT | 1 cut(s) | 875 |
| MaeIII | GTNAC | 1 cut(s) | 661 |
| MalI | GATC | 4 cut(s) | 203, 723, 992, 1023 |
| MboI | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| MboII | GAAGA | 4 cut(s) | 16, 323, 857, 1022 |
| MflI | RGATCY | 2 cut(s) | 721, 1021 |
| MluCI | AATT | 7 cut(s) | 65, 250, 435, 599, 617, 885, 997 |
| MmeI | TCCRAC | 2 cut(s) | 603, 627 |
| Mph1103I | ATGCAT | 3 cut(s) | 335, 718, 976 |
| MseI | TTAA | 5 cut(s) | 144, 339, 384, 654, 996 |
| MspI | CCGG | 1 cut(s) | 403 |
| MspR9I | CCNGG | 1 cut(s) | 403 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 330, 980, 1034 |
| NciI | CCSGG | 1 cut(s) | 403 |
| NdeII | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| NlaIII | CATG | 4 cut(s) | 56, 337, 720, 816 |
| NsiI | ATGCAT | 3 cut(s) | 335, 718, 976 |
| NspI | RCATGY | 1 cut(s) | 816 |
| PciI | ACATGT | 1 cut(s) | 812 |
| PfeI | GAWTC | 2 cut(s) | 49, 214 |
| Ppu21I | YACGTR | 1 cut(s) | 876 |
| PscI | ACATGT | 1 cut(s) | 812 |
| PsiI | TTATAA | 1 cut(s) | 459 |
| PspPI | GGNCC | 1 cut(s) | 181 |
| PstI | CTGCAG | 1 cut(s) | 970 |
| PsuI | RGATCY | 2 cut(s) | 721, 1021 |
| RsaI | GTAC | 2 cut(s) | 137, 878 |
| RsaNI | GTAC | 2 cut(s) | 136, 877 |
| SaqAI | TTAA | 5 cut(s) | 144, 339, 384, 654, 996 |
| Sau3AI | GATC | 4 cut(s) | 201, 721, 990, 1021 |
| Sau96I | GGNCC | 1 cut(s) | 181 |
| ScrFI | CCNGG | 1 cut(s) | 403 |
| SfaNI | GCATC | 5 cut(s) | 320, 388, 493, 961, 983 |
| SfcI | CTRYAG | 1 cut(s) | 966 |
| SinI | GGWCC | 1 cut(s) | 181 |
| Sse9I | AATT | 7 cut(s) | 65, 250, 435, 599, 617, 885, 997 |
| SsiI | CCGC | 3 cut(s) | 926, 983, 1052 |
| SspI | AATATT | 2 cut(s) | 658, 673 |
| StyD4I | CCNGG | 1 cut(s) | 401 |
| TaiI | ACGT | 1 cut(s) | 878 |
| TaqI | TCGA | 3 cut(s) | 204, 228, 743 |
| TasI | AATT | 7 cut(s) | 65, 250, 435, 599, 617, 885, 997 |
| TatI | WGTACW | 1 cut(s) | 135 |
| TfiI | GAWTC | 2 cut(s) | 49, 214 |
| Tru1I | TTAA | 5 cut(s) | 144, 339, 384, 654, 996 |
| Tru9I | TTAA | 5 cut(s) | 144, 339, 384, 654, 996 |
| TspDTI | ATGAA | 4 cut(s) | 17, 41, 117, 1029 |
| VpaK11BI | GGWCC | 1 cut(s) | 181 |
| XceI | RCATGY | 1 cut(s) | 816 |
| Zsp2I | ATGCAT | 3 cut(s) | 335, 718, 976 |