Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 3 - 55 | 1.8e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 36 | 3.3e-11 | PPR repeat |
| PPR_2 | PF13041 | 9 - 57 | 1e-17 | PPR repeat family |
| PPR | PF01535 | 11 - 41 | 4.2e-08 | PPR repeat |
| MRP-S27 | PF10037 | 12 - 84 | 8.4e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 40 - 71 | 3.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 43 - 91 | 1.5e-12 | PPR repeat family |
| PPR_1 | PF12854 | 74 - 104 | 5.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 78 - 123 | 4.5e-10 | PPR repeat family |
| PPR | PF01535 | 81 - 110 | 1.1e-06 | PPR repeat |
| PPR_3 | PF13812 | 102 - 159 | 1.5e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 110 - 142 | 2.6e-06 | PPR repeat |
| PPR_long | PF17177 | 112 - 219 | 1.1e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 114 - 162 | 1.1e-17 | PPR repeat family |
| PPR | PF01535 | 116 - 144 | 2.1e-06 | PPR repeat |
| PPR_1 | PF12854 | 145 - 177 | 6.1e-16 | PPR repeat |
| PPR_2 | PF13041 | 148 - 196 | 7.7e-19 | PPR repeat family |
| PPR | PF01535 | 151 - 180 | 3.2e-11 | PPR repeat |
| PPR_1 | PF12854 | 180 - 212 | 7.9e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 488, 537 |
| AcoI | YGGCCR | 1 cut(s) | 538 |
| AfaI | GTAC | 1 cut(s) | 135 |
| AflIII | ACRYGT | 1 cut(s) | 301 |
| AgsI | TTSAA | 4 cut(s) | 100, 145, 218, 557 |
| AluBI | AGCT | 2 cut(s) | 86, 514 |
| AluI | AGCT | 2 cut(s) | 86, 514 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AoxI | GGCC | 4 cut(s) | 70, 328, 399, 538 |
| ApaI | GGGCCC | 1 cut(s) | 332 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 438 |
| AspS9I | GGNCC | 2 cut(s) | 328, 329 |
| AsuHPI | GGTGA | 1 cut(s) | 407 |
| BaeGI | GKGCMC | 1 cut(s) | 332 |
| BanII | GRGCYC | 1 cut(s) | 332 |
| BccI | CCATC | 3 cut(s) | 172, 467, 625 |
| BceAI | ACGGC | 1 cut(s) | 624 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 1 cut(s) | 653 |
| BisI | GCNGC | 1 cut(s) | 538 |
| BlpI | GCTNAGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 1 cut(s) | 539 |
| BmgT120I | GGNCC | 2 cut(s) | 328, 329 |
| BmiI | GGNNCC | 1 cut(s) | 330 |
| BmsI | GCATC | 2 cut(s) | 516, 568 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 503, 535 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 228 |
| Bse1I | ACTGG | 2 cut(s) | 73, 321 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseGI | GGATG | 1 cut(s) | 183 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 3 cut(s) | 101, 219, 513 |
| BseNI | ACTGG | 2 cut(s) | 73, 321 |
| BseRI | GAGGAG | 1 cut(s) | 294 |
| BseSI | GKGCMC | 1 cut(s) | 332 |
| BshFI | GGCC | 4 cut(s) | 72, 330, 401, 540 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 4 cut(s) | 72, 330, 401, 540 |
| Bsp120I | GGGCCC | 1 cut(s) | 328 |
| Bsp1286I | GDGCHC | 1 cut(s) | 332 |
| Bsp143I | GATC | 1 cut(s) | 310 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 228 |
| BspACI | CCGC | 2 cut(s) | 488, 537 |
| BspANI | GGCC | 4 cut(s) | 72, 330, 401, 540 |
| BspCNI | CTCAG | 3 cut(s) | 102, 220, 514 |
| BspLI | GGNNCC | 1 cut(s) | 330 |
| BspQI | GCTCTTC | 1 cut(s) | 504 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BsrI | ACTGG | 2 cut(s) | 73, 321 |
| BssMI | GATC | 1 cut(s) | 310 |
| Bst4CI | ACNGT | 4 cut(s) | 266, 272, 671, 680 |
| Bst6I | CTCTTC | 1 cut(s) | 504 |
| BstDEI | CTNAG | 3 cut(s) | 110, 228, 522 |
| BstF5I | GGATG | 1 cut(s) | 183 |
| BstKTI | GATC | 1 cut(s) | 313 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 69 |
| BstSLI | GKGCMC | 1 cut(s) | 332 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 646 |
| BsuRI | GGCC | 4 cut(s) | 72, 330, 401, 540 |
| BtsCI | GGATG | 1 cut(s) | 183 |
| BtsIMutI | CAGTG | 2 cut(s) | 80, 676 |
| Cfr13I | GGNCC | 2 cut(s) | 328, 329 |
| Csp6I | GTAC | 1 cut(s) | 134 |
| CviAII | CATG | 1 cut(s) | 53 |
| CviJI | RGCY | 9 cut(s) | 72, 86, 232, 330, 401, 514, 540, 594, 638 |
| CviKI_1 | RGCY | 9 cut(s) | 72, 86, 232, 330, 401, 514, 540, 594, 638 |
| CviQI | GTAC | 1 cut(s) | 134 |
| DdeI | CTNAG | 3 cut(s) | 110, 228, 522 |
| DpnI | GATC | 1 cut(s) | 312 |
| DpnII | GATC | 1 cut(s) | 310 |
| EaeI | YGGCCR | 1 cut(s) | 538 |
| Eam1104I | CTCTTC | 1 cut(s) | 504 |
| EarI | CTCTTC | 1 cut(s) | 504 |
| Eco24I | GRGCYC | 1 cut(s) | 332 |
| EcoO109I | RGGNCCY | 2 cut(s) | 328, 329 |
| EcoT38I | GRGCYC | 1 cut(s) | 332 |
| FaeI | CATG | 1 cut(s) | 56 |
| FaiI | YATR | 8 cut(s) | 54, 247, 249, 260, 335, 348, 359, 586 |
| FatI | CATG | 1 cut(s) | 52 |
| FauI | CCCGC | 1 cut(s) | 481 |
| Fnu4HI | GCNGC | 1 cut(s) | 538 |
| FokI | GGATG | 1 cut(s) | 190 |
| FriOI | GRGCYC | 1 cut(s) | 332 |
| Fsp4HI | GCNGC | 1 cut(s) | 538 |
| FspBI | CTAG | 1 cut(s) | 653 |
| GluI | GCNGC | 1 cut(s) | 538 |
| HaeIII | GGCC | 4 cut(s) | 72, 330, 401, 540 |
| Hin1II | CATG | 1 cut(s) | 56 |
| HinfI | GANTC | 2 cut(s) | 49, 214 |
| HphI | GGTGA | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 2 cut(s) | 667, 674 |
| Hpy188I | TCNGA | 1 cut(s) | 523 |
| Hpy188III | TCNNGA | 1 cut(s) | 548 |
| Hpy8I | GTNNAC | 2 cut(s) | 667, 674 |
| HpyAV | CCTTC | 4 cut(s) | 110, 151, 167, 319 |
| HpyCH4III | ACNGT | 4 cut(s) | 266, 272, 671, 680 |
| HpyCH4IV | ACGT | 2 cut(s) | 27, 303 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 63, 378, 529, 588 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 69 |
| HpyF3I | CTNAG | 3 cut(s) | 110, 228, 522 |
| HpySE526I | ACGT | 2 cut(s) | 27, 303 |
| Hsp92II | CATG | 1 cut(s) | 56 |
| Kzo9I | GATC | 1 cut(s) | 310 |
| LguI | GCTCTTC | 1 cut(s) | 504 |
| LpnPI | CCDG | 4 cut(s) | 86, 302, 561, 676 |
| LweI | GCATC | 2 cut(s) | 516, 568 |
| MaeI | CTAG | 1 cut(s) | 653 |
| MaeII | ACGT | 2 cut(s) | 27, 303 |
| MaeIII | GTNAC | 4 cut(s) | 31, 266, 353, 451 |
| MalI | GATC | 1 cut(s) | 312 |
| MboI | GATC | 1 cut(s) | 310 |
| MboII | GAAGA | 3 cut(s) | 115, 394, 521 |
| MhlI | GDGCHC | 1 cut(s) | 332 |
| MluCI | AATT | 5 cut(s) | 235, 250, 599, 617, 644 |
| MnlI | CCTC | 5 cut(s) | 5, 215, 272, 286, 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 438 |
| MseI | TTAA | 5 cut(s) | 204, 339, 414, 459, 624 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 69 |
| NdeII | GATC | 1 cut(s) | 310 |
| NlaIII | CATG | 1 cut(s) | 56 |
| NlaIV | GGNNCC | 1 cut(s) | 330 |
| PciSI | GCTCTTC | 1 cut(s) | 504 |
| PdmI | GAANNNNTTC | 1 cut(s) | 438 |
| PfeI | GAWTC | 2 cut(s) | 49, 214 |
| PkrI | GCNGC | 1 cut(s) | 539 |
| PspN4I | GGNNCC | 1 cut(s) | 330 |
| PspOMI | GGGCCC | 1 cut(s) | 328 |
| PspPI | GGNCC | 2 cut(s) | 328, 329 |
| RsaI | GTAC | 1 cut(s) | 135 |
| RsaNI | GTAC | 1 cut(s) | 134 |
| SapI | GCTCTTC | 1 cut(s) | 504 |
| SaqAI | TTAA | 5 cut(s) | 204, 339, 414, 459, 624 |
| SatI | GCNGC | 1 cut(s) | 538 |
| Sau3AI | GATC | 1 cut(s) | 310 |
| Sau96I | GGNCC | 2 cut(s) | 328, 329 |
| SduI | GDGCHC | 1 cut(s) | 332 |
| SetI | ASST | 9 cut(s) | 16, 30, 88, 121, 143, 226, 306, 516, 535 |
| SfaNI | GCATC | 2 cut(s) | 516, 568 |
| Sse9I | AATT | 5 cut(s) | 235, 250, 599, 617, 644 |
| SsiI | CCGC | 2 cut(s) | 488, 537 |
| SspMI | CTAG | 1 cut(s) | 653 |
| TaaI | ACNGT | 4 cut(s) | 266, 272, 671, 680 |
| TaiI | ACGT | 2 cut(s) | 30, 306 |
| TaqI | TCGA | 1 cut(s) | 239 |
| TasI | AATT | 5 cut(s) | 235, 250, 599, 617, 644 |
| TauI | GCSGC | 1 cut(s) | 540 |
| TfiI | GAWTC | 2 cut(s) | 49, 214 |
| Tru1I | TTAA | 5 cut(s) | 204, 339, 414, 459, 624 |
| Tru9I | TTAA | 5 cut(s) | 204, 339, 414, 459, 624 |
| TscAI | CASTG | 2 cut(s) | 80, 683 |
| TspDTI | ATGAA | 1 cut(s) | 41 |
| TspRI | CASTG | 2 cut(s) | 80, 683 |
| XmnI | GAANNNNTTC | 1 cut(s) | 438 |
| XspI | CTAG | 1 cut(s) | 653 |