Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 4 - 36 | 2.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 2.6e-11 | PPR repeat family |
| TPR_24 | PF23276 | 31 - 106 | 2.1e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 40 - 71 | 4.7e-10 | PPR repeat |
| PPR_2 | PF13041 | 44 - 92 | 5.4e-14 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 1.4e-08 | PPR repeat |
| PPR_1 | PF12854 | 78 - 107 | 4.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 79 - 106 | 6.6e-08 | PPR repeat family |
| PPR | PF01535 | 82 - 106 | 3.6e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 192 |
| AgsI | TTSAA | 4 cut(s) | 40, 101, 113, 310 |
| AluBI | AGCT | 1 cut(s) | 127 |
| AluI | AGCT | 1 cut(s) | 127 |
| AlwI | GGATC | 1 cut(s) | 192 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 165 |
| AseI | ATTAAT | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 227 |
| BccI | CCATC | 1 cut(s) | 5 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmsI | GCATC | 1 cut(s) | 63 |
| BsaJI | CCNNGG | 1 cut(s) | 228 |
| BseDI | CCNNGG | 1 cut(s) | 228 |
| BseGI | GGATG | 2 cut(s) | 78, 111 |
| BseRI | GAGGAG | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp143I | GATC | 3 cut(s) | 184, 205, 289 |
| Bsp19I | CCATGG | 1 cut(s) | 228 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspPI | GGATC | 1 cut(s) | 192 |
| BssECI | CCNNGG | 1 cut(s) | 228 |
| BssMI | GATC | 3 cut(s) | 184, 205, 289 |
| BssT1I | CCWWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 2 cut(s) | 161, 167 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstF5I | GGATG | 2 cut(s) | 78, 111 |
| BstKTI | GATC | 3 cut(s) | 187, 208, 292 |
| BstMBI | GATC | 3 cut(s) | 184, 205, 289 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 94 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtsCI | GGATG | 2 cut(s) | 78, 111 |
| CaiI | CAGNNNCTG | 1 cut(s) | 165 |
| CviAII | CATG | 1 cut(s) | 229 |
| CviJI | RGCY | 3 cut(s) | 127, 225, 296 |
| CviKI_1 | RGCY | 3 cut(s) | 127, 225, 296 |
| DpnI | GATC | 3 cut(s) | 186, 207, 291 |
| DpnII | GATC | 3 cut(s) | 184, 205, 289 |
| Eco130I | CCWWGG | 1 cut(s) | 228 |
| Eco24I | GRGCYC | 1 cut(s) | 227 |
| EcoT14I | CCWWGG | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 228 |
| FaeI | CATG | 1 cut(s) | 232 |
| FaiI | YATR | 5 cut(s) | 120, 155, 212, 230, 254 |
| FatI | CATG | 1 cut(s) | 228 |
| FokI | GGATG | 2 cut(s) | 85, 118 |
| FriOI | GRGCYC | 1 cut(s) | 227 |
| Hin1II | CATG | 1 cut(s) | 232 |
| HinfI | GANTC | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 1 cut(s) | 243 |
| HpyCH4III | ACNGT | 2 cut(s) | 161, 167 |
| HpyCH4V | TGCA | 1 cut(s) | 273 |
| Hsp92II | CATG | 1 cut(s) | 232 |
| Kzo9I | GATC | 3 cut(s) | 184, 205, 289 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 1 cut(s) | 278 |
| LweI | GCATC | 1 cut(s) | 63 |
| MaeIII | GTNAC | 3 cut(s) | 31, 161, 248 |
| MalI | GATC | 3 cut(s) | 186, 207, 291 |
| MboI | GATC | 3 cut(s) | 184, 205, 289 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MluCI | AATT | 1 cut(s) | 135 |
| MnlI | CCTC | 1 cut(s) | 167 |
| MseI | TTAA | 2 cut(s) | 234, 261 |
| NcoI | CCATGG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 184, 205, 289 |
| NlaIII | CATG | 1 cut(s) | 232 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PshBI | ATTAAT | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PstNI | CAGNNNCTG | 1 cut(s) | 165 |
| SaqAI | TTAA | 2 cut(s) | 234, 261 |
| Sau3AI | GATC | 3 cut(s) | 184, 205, 289 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SetI | ASST | 1 cut(s) | 129 |
| SfaNI | GCATC | 1 cut(s) | 63 |
| Sse9I | AATT | 1 cut(s) | 135 |
| SspI | AATATT | 1 cut(s) | 238 |
| StyI | CCWWGG | 1 cut(s) | 228 |
| TaaI | ACNGT | 2 cut(s) | 161, 167 |
| TasI | AATT | 1 cut(s) | 135 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| Tru1I | TTAA | 2 cut(s) | 234, 261 |
| Tru9I | TTAA | 2 cut(s) | 234, 261 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| VspI | ATTAAT | 1 cut(s) | 261 |