Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 75 - 123 | 4.3e-08 | PPR repeat family |
| PPR_3 | PF13812 | 140 - 192 | 8.3e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 142 - 174 | 1.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 145 - 194 | 1.3e-13 | PPR repeat family |
| PPR_1 | PF12854 | 179 - 210 | 4.1e-10 | PPR repeat |
| PPR_3 | PF13812 | 180 - 230 | 8.2e-12 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 181 - 229 | 5.4e-15 | PPR repeat family |
| PPR | PF01535 | 184 - 214 | 6.8e-06 | PPR repeat |
| PPR_1 | PF12854 | 212 - 244 | 1.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 216 - 265 | 2.4e-17 | PPR repeat family |
| PPR_long | PF17177 | 219 - 307 | 2.1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR | PF01535 | 219 - 249 | 4.5e-06 | PPR repeat |
| PPR_3 | PF13812 | 240 - 299 | 8.4e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 247 - 280 | 1.3e-09 | PPR repeat |
| PPR_2 | PF13041 | 251 - 300 | 1.1e-16 | PPR repeat family |
| MRP-S27 | PF10037 | 255 - 314 | 6.8e-06 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 282 - 314 | 8.2e-11 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 141 |
| Acc36I | ACCTGC | 1 cut(s) | 141 |
| AccBSI | CCGCTC | 1 cut(s) | 488 |
| AccIII | TCCGGA | 1 cut(s) | 618 |
| AciI | CCGC | 2 cut(s) | 488, 602 |
| AclI | AACGTT | 1 cut(s) | 756 |
| AcsI | RAATTY | 1 cut(s) | 298 |
| AcuI | CTGAAG | 1 cut(s) | 26 |
| AdeI | CACNNNGTG | 1 cut(s) | 657 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 164, 625, 724 |
| AhlI | ACTAGT | 1 cut(s) | 697 |
| AjnI | CCWGG | 1 cut(s) | 681 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 13, 45 |
| AluBI | AGCT | 1 cut(s) | 815 |
| AluI | AGCT | 1 cut(s) | 815 |
| Alw26I | GTCTC | 1 cut(s) | 317 |
| Aor13HI | TCCGGA | 1 cut(s) | 618 |
| AoxI | GGCC | 2 cut(s) | 406, 799 |
| ApeKI | GCWGC | 2 cut(s) | 45, 154 |
| ApoI | RAATTY | 1 cut(s) | 298 |
| AseI | ATTAAT | 1 cut(s) | 566 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 191, 204, 719 |
| AspLEI | GCGC | 1 cut(s) | 18 |
| AspS9I | GGNCC | 1 cut(s) | 406 |
| AsuHPI | GGTGA | 2 cut(s) | 850, 859 |
| BbsI | GAAGAC | 1 cut(s) | 419 |
| BbvI | GCAGC | 2 cut(s) | 57, 141 |
| BccI | CCATC | 1 cut(s) | 677 |
| BceAI | ACGGC | 1 cut(s) | 468 |
| BciT130I | CCWGG | 1 cut(s) | 683 |
| BcoDI | GTCTC | 1 cut(s) | 317 |
| BcuI | ACTAGT | 1 cut(s) | 697 |
| BfaI | CTAG | 1 cut(s) | 698 |
| BfuAI | ACCTGC | 1 cut(s) | 141 |
| BglII | AGATCT | 1 cut(s) | 246 |
| BisI | GCNGC | 4 cut(s) | 46, 155, 489, 603 |
| BlsI | GCNGC | 4 cut(s) | 47, 156, 490, 604 |
| Bme1390I | CCNGG | 1 cut(s) | 683 |
| BmgT120I | GGNCC | 1 cut(s) | 406 |
| BmrFI | CCNGG | 1 cut(s) | 683 |
| BmsI | GCATC | 5 cut(s) | 3, 223, 484, 629, 877 |
| BpiI | GAAGAC | 1 cut(s) | 419 |
| BsaI | GGTCTC | 1 cut(s) | 317 |
| BsaJI | CCNNGG | 3 cut(s) | 316, 463, 682 |
| BsaWI | WCCGGW | 1 cut(s) | 618 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 164, 625, 724 |
| Bse1I | ACTGG | 2 cut(s) | 235, 809 |
| BseAI | TCCGGA | 1 cut(s) | 618 |
| BseBI | CCWGG | 1 cut(s) | 683 |
| BseDI | CCNNGG | 3 cut(s) | 316, 463, 682 |
| BseGI | GGATG | 1 cut(s) | 644 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 164, 625, 724 |
| BseMII | CTCAG | 1 cut(s) | 257 |
| BseNI | ACTGG | 2 cut(s) | 235, 809 |
| BseXI | GCAGC | 2 cut(s) | 57, 141 |
| BshFI | GGCC | 2 cut(s) | 408, 801 |
| BsiSI | CCGG | 1 cut(s) | 619 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 164, 625, 724 |
| BsmAI | GTCTC | 1 cut(s) | 317 |
| BsnI | GGCC | 2 cut(s) | 408, 801 |
| Bso31I | GGTCTC | 1 cut(s) | 317 |
| Bsp13I | TCCGGA | 1 cut(s) | 618 |
| Bsp143I | GATC | 2 cut(s) | 142, 246 |
| BspACI | CCGC | 2 cut(s) | 488, 602 |
| BspANI | GGCC | 2 cut(s) | 408, 801 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspEI | TCCGGA | 1 cut(s) | 618 |
| BspMI | ACCTGC | 1 cut(s) | 141 |
| BspTNI | GGTCTC | 1 cut(s) | 317 |
| BsrBI | CCGCTC | 1 cut(s) | 488 |
| BsrI | ACTGG | 2 cut(s) | 235, 809 |
| BssECI | CCNNGG | 3 cut(s) | 316, 463, 682 |
| BssMI | GATC | 2 cut(s) | 142, 246 |
| Bst2UI | CCWGG | 1 cut(s) | 683 |
| Bst4CI | ACNGT | 1 cut(s) | 655 |
| Bst6I | CTCTTC | 1 cut(s) | 725 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 1 cut(s) | 644 |
| BstDEI | CTNAG | 2 cut(s) | 243, 344 |
| BstDSI | CCRYGG | 2 cut(s) | 316, 463 |
| BstF5I | GGATG | 1 cut(s) | 644 |
| BstHHI | GCGC | 1 cut(s) | 18 |
| BstKTI | GATC | 2 cut(s) | 145, 249 |
| BstMAI | GTCTC | 1 cut(s) | 317 |
| BstMBI | GATC | 2 cut(s) | 142, 246 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 22, 211, 220, 494, 798 |
| BstNI | CCWGG | 1 cut(s) | 683 |
| BstSCI | CCNGG | 1 cut(s) | 681 |
| BstV1I | GCAGC | 2 cut(s) | 57, 141 |
| BstV2I | GAAGAC | 1 cut(s) | 419 |
| BstX2I | RGATCY | 1 cut(s) | 246 |
| BstYI | RGATCY | 1 cut(s) | 246 |
| BsuRI | GGCC | 2 cut(s) | 408, 801 |
| BtgI | CCRYGG | 2 cut(s) | 316, 463 |
| BtsCI | GGATG | 1 cut(s) | 644 |
| BtsI | GCAGTG | 1 cut(s) | 597 |
| BtsIMutI | CAGTG | 3 cut(s) | 597, 660, 802 |
| BveI | ACCTGC | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 1 cut(s) | 644 |
| CfoI | GCGC | 1 cut(s) | 18 |
| Cfr13I | GGNCC | 1 cut(s) | 406 |
| CviAII | CATG | 1 cut(s) | 583 |
| DdeI | CTNAG | 2 cut(s) | 243, 344 |
| DpnI | GATC | 2 cut(s) | 144, 248 |
| DpnII | GATC | 2 cut(s) | 142, 246 |
| DraIII | CACNNNGTG | 1 cut(s) | 657 |
| Eam1104I | CTCTTC | 1 cut(s) | 725 |
| EarI | CTCTTC | 1 cut(s) | 725 |
| Eco31I | GGTCTC | 1 cut(s) | 317 |
| Eco32I | GATATC | 1 cut(s) | 850 |
| Eco57I | CTGAAG | 1 cut(s) | 26 |
| EcoRI | GAATTC | 1 cut(s) | 298 |
| EcoRII | CCWGG | 1 cut(s) | 681 |
| EcoRV | GATATC | 1 cut(s) | 850 |
| EcoT22I | ATGCAT | 1 cut(s) | 892 |
| FaeI | CATG | 1 cut(s) | 586 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 704, 736 |
| FatI | CATG | 1 cut(s) | 582 |
| Fnu4HI | GCNGC | 4 cut(s) | 46, 155, 489, 603 |
| FokI | GGATG | 1 cut(s) | 651 |
| Fsp4HI | GCNGC | 4 cut(s) | 46, 155, 489, 603 |
| FspBI | CTAG | 1 cut(s) | 698 |
| GlaI | GCGC | 1 cut(s) | 17 |
| GluI | GCNGC | 4 cut(s) | 46, 155, 489, 603 |
| HaeIII | GGCC | 2 cut(s) | 408, 801 |
| HapII | CCGG | 1 cut(s) | 619 |
| HhaI | GCGC | 1 cut(s) | 18 |
| Hin1II | CATG | 1 cut(s) | 586 |
| Hin6I | GCGC | 1 cut(s) | 16 |
| HinP1I | GCGC | 1 cut(s) | 16 |
| HincII | GTYRAC | 1 cut(s) | 703 |
| HindII | GTYRAC | 1 cut(s) | 703 |
| HinfI | GANTC | 4 cut(s) | 35, 271, 778, 931 |
| HpaII | CCGG | 1 cut(s) | 619 |
| HphI | GGTGA | 2 cut(s) | 850, 859 |
| Hpy166II | GTNNAC | 2 cut(s) | 240, 703 |
| Hpy188I | TCNGA | 5 cut(s) | 34, 246, 727, 930, 936 |
| Hpy188III | TCNNGA | 3 cut(s) | 250, 329, 619 |
| Hpy8I | GTNNAC | 2 cut(s) | 240, 703 |
| HpyAV | CCTTC | 4 cut(s) | 234, 457, 880, 896 |
| HpyCH4III | ACNGT | 1 cut(s) | 655 |
| HpyCH4IV | ACGT | 2 cut(s) | 756, 821 |
| HpyCH4V | TGCA | 7 cut(s) | 45, 443, 497, 582, 792, 890, 897 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 22, 211, 220, 494, 798 |
| HpyF3I | CTNAG | 2 cut(s) | 243, 344 |
| HpySE526I | ACGT | 2 cut(s) | 756, 821 |
| Hsp92II | CATG | 1 cut(s) | 586 |
| HspAI | GCGC | 1 cut(s) | 16 |
| Kpn2I | TCCGGA | 1 cut(s) | 618 |
| Kzo9I | GATC | 2 cut(s) | 142, 246 |
| LmnI | GCTCC | 1 cut(s) | 754 |
| Lsp1109I | GCAGC | 2 cut(s) | 57, 141 |
| LweI | GCATC | 5 cut(s) | 3, 223, 484, 629, 877 |
| MaeI | CTAG | 1 cut(s) | 698 |
| MaeII | ACGT | 2 cut(s) | 756, 821 |
| MaeIII | GTNAC | 2 cut(s) | 550, 760 |
| MalI | GATC | 2 cut(s) | 144, 248 |
| MbiI | CCGCTC | 1 cut(s) | 488 |
| MboI | GATC | 2 cut(s) | 142, 246 |
| MboII | GAAGA | 6 cut(s) | 19, 21, 419, 641, 712, 844 |
| MfeI | CAATTG | 1 cut(s) | 358 |
| MflI | RGATCY | 1 cut(s) | 246 |
| MluCI | AATT | 7 cut(s) | 266, 275, 298, 321, 358, 419, 611 |
| MmeI | TCCRAC | 1 cut(s) | 143 |
| Mph1103I | ATGCAT | 1 cut(s) | 892 |
| MroI | TCCGGA | 1 cut(s) | 618 |
| MroXI | GAANNNNTTC | 3 cut(s) | 191, 204, 719 |
| MseI | TTAA | 2 cut(s) | 566, 946 |
| MspI | CCGG | 1 cut(s) | 619 |
| MspR9I | CCNGG | 1 cut(s) | 683 |
| MunI | CAATTG | 1 cut(s) | 358 |
| MvaI | CCWGG | 1 cut(s) | 683 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 22, 211, 220, 494, 798 |
| NdeII | GATC | 2 cut(s) | 142, 246 |
| NlaIII | CATG | 1 cut(s) | 586 |
| NsiI | ATGCAT | 1 cut(s) | 892 |
| PaqCI | CACCTGC | 1 cut(s) | 141 |
| PdmI | GAANNNNTTC | 3 cut(s) | 191, 204, 719 |
| PfeI | GAWTC | 4 cut(s) | 35, 271, 778, 931 |
| PkrI | GCNGC | 4 cut(s) | 47, 156, 490, 604 |
| PshBI | ATTAAT | 1 cut(s) | 566 |
| Psp1406I | AACGTT | 1 cut(s) | 756 |
| Psp6I | CCWGG | 1 cut(s) | 681 |
| PspGI | CCWGG | 1 cut(s) | 681 |
| PspPI | GGNCC | 1 cut(s) | 406 |
| PsuI | RGATCY | 1 cut(s) | 246 |
| SaqAI | TTAA | 2 cut(s) | 566, 946 |
| SatI | GCNGC | 4 cut(s) | 46, 155, 489, 603 |
| Sau3AI | GATC | 2 cut(s) | 142, 246 |
| Sau96I | GGNCC | 1 cut(s) | 406 |
| ScrFI | CCNGG | 1 cut(s) | 683 |
| SfaNI | GCATC | 5 cut(s) | 3, 223, 484, 629, 877 |
| SpeI | ACTAGT | 1 cut(s) | 697 |
| Sse9I | AATT | 7 cut(s) | 266, 275, 298, 321, 358, 419, 611 |
| SsiI | CCGC | 2 cut(s) | 488, 602 |
| SspMI | CTAG | 1 cut(s) | 698 |
| StyD4I | CCNGG | 1 cut(s) | 681 |
| TaaI | ACNGT | 1 cut(s) | 655 |
| TaiI | ACGT | 2 cut(s) | 759, 824 |
| TaqI | TCGA | 4 cut(s) | 145, 195, 484, 675 |
| TasI | AATT | 7 cut(s) | 266, 275, 298, 321, 358, 419, 611 |
| TauI | GCSGC | 2 cut(s) | 491, 605 |
| TfiI | GAWTC | 4 cut(s) | 35, 271, 778, 931 |
| Tru1I | TTAA | 2 cut(s) | 566, 946 |
| Tru9I | TTAA | 2 cut(s) | 566, 946 |
| TscAI | CASTG | 3 cut(s) | 604, 660, 809 |
| TseI | GCWGC | 2 cut(s) | 45, 154 |
| TspDTI | ATGAA | 4 cut(s) | 27, 89, 213, 846 |
| TspGWI | ACGGA | 2 cut(s) | 305, 480 |
| TspRI | CASTG | 3 cut(s) | 604, 660, 809 |
| VspI | ATTAAT | 1 cut(s) | 566 |
| XapI | RAATTY | 1 cut(s) | 298 |
| XmnI | GAANNNNTTC | 3 cut(s) | 191, 204, 719 |
| XspI | CTAG | 1 cut(s) | 698 |
| Zsp2I | ATGCAT | 1 cut(s) | 892 |