pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 8 - 57 | 6.9e-08 | PPR repeat family |
| PPR_3 | PF13812 | 67 - 125 | 2.3e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 79 - 127 | 8.9e-11 | PPR repeat family |
| PPR_3 | PF13812 | 107 - 160 | 2.5e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 111 - 143 | 2.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 114 - 163 | 2.7e-11 | PPR repeat family |
| PPR_1 | PF12854 | 147 - 165 | 5.2e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 359 |
| AccIII | TCCGGA | 1 cut(s) | 116 |
| AciI | CCGC | 1 cut(s) | 402 |
| AclI | AACGTT | 1 cut(s) | 450 |
| AcsI | RAATTY | 1 cut(s) | 120 |
| AcyI | GRCGYC | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 50 |
| AflII | CTTAAG | 2 cut(s) | 275, 416 |
| AgsI | TTSAA | 5 cut(s) | 8, 70, 97, 217, 310 |
| AleI | CACNNNNGTG | 1 cut(s) | 44 |
| AluBI | AGCT | 1 cut(s) | 437 |
| AluI | AGCT | 1 cut(s) | 437 |
| Alw21I | GWGCWC | 1 cut(s) | 510 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| Alw44I | GTGCAC | 1 cut(s) | 506 |
| Aor13HI | TCCGGA | 1 cut(s) | 116 |
| AoxI | GGCC | 2 cut(s) | 288, 372 |
| ApaLI | GTGCAC | 1 cut(s) | 506 |
| ApeKI | GCWGC | 2 cut(s) | 296, 299 |
| ApoI | RAATTY | 1 cut(s) | 120 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| AspS9I | GGNCC | 1 cut(s) | 373 |
| BaeGI | GKGCMC | 1 cut(s) | 510 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 483, 516 |
| BanI | GGYRCC | 1 cut(s) | 359 |
| Bbv12I | GWGCWC | 1 cut(s) | 510 |
| BbvI | GCAGC | 2 cut(s) | 308, 311 |
| BccI | CCATC | 2 cut(s) | 313, 418 |
| BceAI | ACGGC | 1 cut(s) | 280 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BfaI | CTAG | 1 cut(s) | 497 |
| BfrI | CTTAAG | 2 cut(s) | 275, 416 |
| BisI | GCNGC | 3 cut(s) | 297, 300, 402 |
| BlsI | GCNGC | 3 cut(s) | 298, 301, 403 |
| BmgT120I | GGNCC | 1 cut(s) | 373 |
| BmiI | GGNNCC | 1 cut(s) | 361 |
| BoxI | GACNNNNGTC | 1 cut(s) | 236 |
| BpmI | CTGGAG | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 1 cut(s) | 13 |
| BsaJI | CCNNGG | 1 cut(s) | 291 |
| BsaWI | WCCGGW | 1 cut(s) | 116 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 50 |
| Bse1I | ACTGG | 1 cut(s) | 44 |
| Bse3DI | GCAATG | 1 cut(s) | 396 |
| BseAI | TCCGGA | 1 cut(s) | 116 |
| BseDI | CCNNGG | 1 cut(s) | 291 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 50 |
| BseMI | GCAATG | 1 cut(s) | 396 |
| BseNI | ACTGG | 1 cut(s) | 44 |
| BseRI | GAGGAG | 1 cut(s) | 447 |
| BseSI | GKGCMC | 1 cut(s) | 510 |
| BseXI | GCAGC | 2 cut(s) | 308, 311 |
| BsgI | GTGCAG | 1 cut(s) | 496 |
| BshFI | GGCC | 2 cut(s) | 290, 374 |
| BshNI | GGYRCC | 1 cut(s) | 359 |
| BsiHKAI | GWGCWC | 1 cut(s) | 510 |
| BsiSI | CCGG | 1 cut(s) | 117 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 50 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| BsnI | GGCC | 2 cut(s) | 290, 374 |
| Bsp1286I | GDGCHC | 1 cut(s) | 510 |
| Bsp13I | TCCGGA | 1 cut(s) | 116 |
| BspACI | CCGC | 1 cut(s) | 402 |
| BspANI | GGCC | 2 cut(s) | 290, 374 |
| BspEI | TCCGGA | 1 cut(s) | 116 |
| BspLI | GGNNCC | 1 cut(s) | 361 |
| BspT107I | GGYRCC | 1 cut(s) | 359 |
| BspTI | CTTAAG | 2 cut(s) | 275, 416 |
| BsrDI | GCAATG | 1 cut(s) | 396 |
| BsrI | ACTGG | 1 cut(s) | 44 |
| BssECI | CCNNGG | 1 cut(s) | 291 |
| BssNI | GRCGYC | 1 cut(s) | 13 |
| Bst4CI | ACNGT | 2 cut(s) | 85, 479 |
| BstACI | GRCGYC | 1 cut(s) | 13 |
| BstAFI | CTTAAG | 2 cut(s) | 275, 416 |
| BstC8I | GCNNGC | 3 cut(s) | 338, 439, 443 |
| BstDEI | CTNAG | 2 cut(s) | 364, 522 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 296 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 236 |
| BstSLI | GKGCMC | 1 cut(s) | 510 |
| BstV1I | GCAGC | 2 cut(s) | 308, 311 |
| BsuRI | GGCC | 2 cut(s) | 290, 374 |
| BtsI | GCAGTG | 1 cut(s) | 508 |
| BtsIMutI | CAGTG | 2 cut(s) | 51, 508 |
| Cac8I | GCNNGC | 3 cut(s) | 338, 439, 443 |
| Cfr13I | GGNCC | 1 cut(s) | 373 |
| CseI | GACGC | 1 cut(s) | 2 |
| CviAII | CATG | 1 cut(s) | 382 |
| CviJI | RGCY | 6 cut(s) | 267, 290, 340, 374, 437, 445 |
| CviKI_1 | RGCY | 6 cut(s) | 267, 290, 340, 374, 437, 445 |
| DdeI | CTNAG | 2 cut(s) | 364, 522 |
| EcoO109I | RGGNCCY | 1 cut(s) | 373 |
| EcoRI | GAATTC | 1 cut(s) | 120 |
| FaeI | CATG | 1 cut(s) | 385 |
| FaiI | YATR | 3 cut(s) | 138, 383, 462 |
| FatI | CATG | 1 cut(s) | 381 |
| Fnu4HI | GCNGC | 3 cut(s) | 297, 300, 402 |
| Fsp4HI | GCNGC | 3 cut(s) | 297, 300, 402 |
| FspBI | CTAG | 1 cut(s) | 497 |
| GluI | GCNGC | 3 cut(s) | 297, 300, 402 |
| GsuI | CTGGAG | 1 cut(s) | 27 |
| HaeIII | GGCC | 2 cut(s) | 290, 374 |
| HapII | CCGG | 1 cut(s) | 117 |
| HgaI | GACGC | 1 cut(s) | 2 |
| Hin1I | GRCGYC | 1 cut(s) | 13 |
| Hin1II | CATG | 1 cut(s) | 385 |
| HincII | GTYRAC | 1 cut(s) | 56 |
| HindII | GTYRAC | 1 cut(s) | 56 |
| HpaII | CCGG | 1 cut(s) | 117 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 508 |
| Hpy188I | TCNGA | 1 cut(s) | 525 |
| Hpy188III | TCNNGA | 2 cut(s) | 117, 128 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 508 |
| HpyAV | CCTTC | 2 cut(s) | 33, 422 |
| HpyCH4III | ACNGT | 2 cut(s) | 85, 479 |
| HpyCH4IV | ACGT | 1 cut(s) | 450 |
| HpyCH4V | TGCA | 6 cut(s) | 336, 381, 441, 486, 508, 513 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 364, 522 |
| HpySE526I | ACGT | 1 cut(s) | 450 |
| Hsp92I | GRCGYC | 1 cut(s) | 13 |
| Hsp92II | CATG | 1 cut(s) | 385 |
| Kpn2I | TCCGGA | 1 cut(s) | 116 |
| LmnI | GCTCC | 1 cut(s) | 434 |
| LpnPI | CCDG | 3 cut(s) | 57, 130, 141 |
| Lsp1109I | GCAGC | 2 cut(s) | 308, 311 |
| MaeI | CTAG | 1 cut(s) | 497 |
| MaeII | ACGT | 1 cut(s) | 450 |
| MaeIII | GTNAC | 4 cut(s) | 206, 238, 349, 389 |
| MboII | GAAGA | 4 cut(s) | 205, 263, 433, 510 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 510 |
| MluCI | AATT | 5 cut(s) | 120, 157, 218, 331, 410 |
| MnlI | CCTC | 5 cut(s) | 27, 280, 286, 320, 425 |
| MroI | TCCGGA | 1 cut(s) | 116 |
| MseI | TTAA | 3 cut(s) | 156, 276, 417 |
| MslI | CAYNNNNRTG | 1 cut(s) | 44 |
| MspCI | CTTAAG | 2 cut(s) | 275, 416 |
| MspI | CCGG | 1 cut(s) | 117 |
| MunI | CAATTG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 296 |
| NlaIII | CATG | 1 cut(s) | 385 |
| NlaIV | GGNNCC | 1 cut(s) | 361 |
| NmeAIII | GCCGAG | 1 cut(s) | 316 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| OliI | CACNNNNGTG | 1 cut(s) | 44 |
| PkrI | GCNGC | 3 cut(s) | 298, 301, 403 |
| PshAI | GACNNNNGTC | 1 cut(s) | 236 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| Psp1406I | AACGTT | 1 cut(s) | 450 |
| PspN4I | GGNNCC | 1 cut(s) | 361 |
| PspPI | GGNCC | 1 cut(s) | 373 |
| RseI | CAYNNNNRTG | 1 cut(s) | 44 |
| SaqAI | TTAA | 3 cut(s) | 156, 276, 417 |
| SatI | GCNGC | 3 cut(s) | 297, 300, 402 |
| Sau96I | GGNCC | 1 cut(s) | 373 |
| SduI | GDGCHC | 1 cut(s) | 510 |
| SetI | ASST | 6 cut(s) | 226, 331, 365, 391, 439, 453 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 44 |
| SmlI | CTYRAG | 2 cut(s) | 275, 416 |
| SmoI | CTYRAG | 2 cut(s) | 275, 416 |
| Sse9I | AATT | 5 cut(s) | 120, 157, 218, 331, 410 |
| SsiI | CCGC | 1 cut(s) | 402 |
| SspMI | CTAG | 1 cut(s) | 497 |
| TaaI | ACNGT | 2 cut(s) | 85, 479 |
| TaiI | ACGT | 1 cut(s) | 453 |
| TasI | AATT | 5 cut(s) | 120, 157, 218, 331, 410 |
| TauI | GCSGC | 1 cut(s) | 404 |
| Tru1I | TTAA | 3 cut(s) | 156, 276, 417 |
| Tru9I | TTAA | 3 cut(s) | 156, 276, 417 |
| TscAI | CASTG | 2 cut(s) | 51, 515 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| TseI | GCWGC | 2 cut(s) | 296, 299 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 1 cut(s) | 398 |
| TspRI | CASTG | 2 cut(s) | 51, 515 |
| Vha464I | CTTAAG | 2 cut(s) | 275, 416 |
| VneI | GTGCAC | 1 cut(s) | 506 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XapI | RAATTY | 1 cut(s) | 120 |
| XspI | CTAG | 1 cut(s) | 497 |