Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 3 - 59 | 3.2e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 14 - 40 | 1.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 15 - 63 | 2.9e-16 | PPR repeat family |
| PPR_1 | PF12854 | 46 - 77 | 4.3e-09 | PPR repeat |
| PPR_2 | PF13041 | 53 - 91 | 1.7e-09 | PPR repeat family |
| PPR | PF01535 | 53 - 82 | 1.4e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AfaI | GTAC | 1 cut(s) | 262 |
| AgsI | TTSAA | 3 cut(s) | 71, 98, 330 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 333, 365 |
| AluBI | AGCT | 1 cut(s) | 86 |
| AluI | AGCT | 1 cut(s) | 86 |
| Alw26I | GTCTC | 1 cut(s) | 186 |
| AseI | ATTAAT | 1 cut(s) | 174 |
| AsuII | TTCGAA | 1 cut(s) | 131 |
| BbsI | GAAGAC | 3 cut(s) | 30, 106, 120 |
| BccI | CCATC | 4 cut(s) | 13, 68, 283, 338 |
| BcoDI | GTCTC | 1 cut(s) | 186 |
| BfaI | CTAG | 2 cut(s) | 41, 120 |
| BfmI | CTRYAG | 1 cut(s) | 355 |
| BmsI | GCATC | 2 cut(s) | 350, 372 |
| BpiI | GAAGAC | 3 cut(s) | 30, 106, 120 |
| Bpu14I | TTCGAA | 1 cut(s) | 131 |
| BsaI | GGTCTC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 1 cut(s) | 282 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 333, 363 |
| BseDI | CCNNGG | 1 cut(s) | 282 |
| BseGI | GGATG | 1 cut(s) | 278 |
| BslFI | GGGAC | 1 cut(s) | 334 |
| BsmAI | GTCTC | 1 cut(s) | 186 |
| BsmFI | GGGAC | 1 cut(s) | 334 |
| Bso31I | GGTCTC | 1 cut(s) | 186 |
| Bsp119I | TTCGAA | 1 cut(s) | 131 |
| Bsp1407I | TGTACA | 1 cut(s) | 260 |
| BspMAI | CTGCAG | 1 cut(s) | 359 |
| BspT104I | TTCGAA | 1 cut(s) | 131 |
| BspTNI | GGTCTC | 1 cut(s) | 186 |
| BsrGI | TGTACA | 1 cut(s) | 260 |
| BssECI | CCNNGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| BstAUI | TGTACA | 1 cut(s) | 260 |
| BstBI | TTCGAA | 1 cut(s) | 131 |
| BstDEI | CTNAG | 2 cut(s) | 11, 221 |
| BstF5I | GGATG | 1 cut(s) | 278 |
| BstMAI | GTCTC | 1 cut(s) | 186 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 312 |
| BstSFI | CTRYAG | 1 cut(s) | 355 |
| BstV2I | GAAGAC | 3 cut(s) | 30, 106, 120 |
| BtsCI | GGATG | 1 cut(s) | 278 |
| CseI | GACGC | 1 cut(s) | 295 |
| Csp6I | GTAC | 1 cut(s) | 261 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 298, 333 |
| CviJI | RGCY | 5 cut(s) | 86, 145, 203, 243, 315 |
| CviKI_1 | RGCY | 5 cut(s) | 86, 145, 203, 243, 315 |
| CviQI | GTAC | 1 cut(s) | 261 |
| DdeI | CTNAG | 2 cut(s) | 11, 221 |
| Eco31I | GGTCTC | 1 cut(s) | 186 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| EcoT22I | ATGCAT | 1 cut(s) | 365 |
| FaiI | YATR | 5 cut(s) | 160, 162, 255, 265, 267 |
| FaqI | GGGAC | 1 cut(s) | 334 |
| FokI | GGATG | 1 cut(s) | 265 |
| FspBI | CTAG | 2 cut(s) | 41, 120 |
| HgaI | GACGC | 1 cut(s) | 295 |
| HinfI | GANTC | 1 cut(s) | 98 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 1 cut(s) | 330 |
| HpyAV | CCTTC | 2 cut(s) | 65, 148 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 4 cut(s) | 81, 104, 357, 363 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 312 |
| HpyF3I | CTNAG | 2 cut(s) | 11, 221 |
| LpnPI | CCDG | 2 cut(s) | 72, 159 |
| LweI | GCATC | 2 cut(s) | 350, 372 |
| MaeI | CTAG | 2 cut(s) | 41, 120 |
| MboII | GAAGA | 3 cut(s) | 35, 106, 120 |
| MluCI | AATT | 3 cut(s) | 51, 375, 382 |
| MnlI | CCTC | 1 cut(s) | 277 |
| Mph1103I | ATGCAT | 1 cut(s) | 365 |
| MseI | TTAA | 1 cut(s) | 174 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 312 |
| NsiI | ATGCAT | 1 cut(s) | 365 |
| NspV | TTCGAA | 1 cut(s) | 131 |
| PfeI | GAWTC | 1 cut(s) | 98 |
| PshBI | ATTAAT | 1 cut(s) | 174 |
| PstI | CTGCAG | 1 cut(s) | 359 |
| RsaI | GTAC | 1 cut(s) | 262 |
| RsaNI | GTAC | 1 cut(s) | 261 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| SetI | ASST | 3 cut(s) | 76, 88, 198 |
| SfaNI | GCATC | 2 cut(s) | 350, 372 |
| SfcI | CTRYAG | 1 cut(s) | 355 |
| SfuI | TTCGAA | 1 cut(s) | 131 |
| SgeI | CNNG | 9 cut(s) | 40, 53, 99, 107, 132, 158, 295, 322, 342 |
| Sse9I | AATT | 3 cut(s) | 51, 375, 382 |
| SspMI | CTAG | 2 cut(s) | 41, 120 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaqI | TCGA | 1 cut(s) | 131 |
| TasI | AATT | 3 cut(s) | 51, 375, 382 |
| TatI | WGTACW | 1 cut(s) | 260 |
| TfiI | GAWTC | 1 cut(s) | 98 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TspGWI | ACGGA | 1 cut(s) | 387 |
| VspI | ATTAAT | 1 cut(s) | 174 |
| XspI | CTAG | 2 cut(s) | 41, 120 |
| Zsp2I | ATGCAT | 1 cut(s) | 365 |