Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 8 - 55 | 1.1e-08 | PPR repeat family |
| PPR_3 | PF13812 | 36 - 89 | 3.1e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 40 - 71 | 2.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 2.8e-13 | PPR repeat family |
| PPR_3 | PF13812 | 77 - 125 | 1.5e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 77 - 108 | 2.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 79 - 128 | 2.7e-16 | PPR repeat family |
| PPR_1 | PF12854 | 110 - 136 | 1.2e-07 | PPR repeat |
| PPR_3 | PF13812 | 132 - 191 | 3.6e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 139 - 171 | 1.2e-12 | PPR repeat |
| PPR_2 | PF13041 | 143 - 192 | 9.9e-19 | PPR repeat family |
| PPR | PF01535 | 146 - 176 | 6.2e-07 | PPR repeat |
| MRP-S27 | PF10037 | 147 - 209 | 4.7e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 174 - 206 | 4.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 178 - 226 | 4.4e-14 | PPR repeat family |
| TPR_24 | PF23276 | 188 - 320 | 1.9e-10 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 202 - 260 | 7.9e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 210 - 241 | 1.1e-11 | PPR repeat |
| PPR_2 | PF13041 | 213 - 262 | 1e-13 | PPR repeat family |
| PPR | PF01535 | 216 - 245 | 2.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 268 - 309 | 7.1e-10 | PPR repeat family |
| PPR_1 | PF12854 | 293 - 320 | 2.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 295 - 344 | 2.2e-15 | PPR repeat family |
| PPR_1 | PF12854 | 327 - 358 | 1.1e-09 | PPR repeat |
| PPR | PF01535 | 334 - 363 | 1.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 341 - 378 | 3.2e-08 | PPR repeat family |
| PPR_2 | PF13041 | 369 - 406 | 7.4e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 212 |
| AccII | CGCG | 1 cut(s) | 596 |
| AciI | CCGC | 2 cut(s) | 682, 945 |
| AclWI | GGATC | 1 cut(s) | 1247 |
| AfaI | GTAC | 1 cut(s) | 34 |
| AhlI | ACTAGT | 1 cut(s) | 391 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1209, 1241 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1072, 1104 |
| AluBI | AGCT | 3 cut(s) | 87, 491, 929 |
| AluI | AGCT | 3 cut(s) | 87, 491, 929 |
| Alw26I | GTCTC | 1 cut(s) | 1139 |
| AlwI | GGATC | 1 cut(s) | 1247 |
| AoxI | GGCC | 2 cut(s) | 475, 811 |
| ApeKI | GCWGC | 3 cut(s) | 191, 214, 296 |
| AseI | ATTAAT | 1 cut(s) | 456 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 852, 1167 |
| AspS9I | GGNCC | 1 cut(s) | 1104 |
| AsuHPI | GGTGA | 4 cut(s) | 130, 136, 196, 535 |
| AvaII | GGWCC | 1 cut(s) | 1104 |
| AxyI | CCTNAGG | 1 cut(s) | 186 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 378, 411 |
| BanII | GRGCYC | 1 cut(s) | 737 |
| BbsI | GAAGAC | 1 cut(s) | 113 |
| BbvI | GCAGC | 3 cut(s) | 178, 201, 283 |
| BccI | CCATC | 6 cut(s) | 313, 371, 577, 662, 803, 856 |
| BceAI | ACGGC | 2 cut(s) | 175, 524 |
| BciVI | GTATCC | 1 cut(s) | 379 |
| BcoDI | GTCTC | 1 cut(s) | 1139 |
| BcuI | ACTAGT | 1 cut(s) | 391 |
| BfaI | CTAG | 1 cut(s) | 392 |
| BfmI | CTRYAG | 4 cut(s) | 215, 355, 837, 1197 |
| BfuAI | ACCTGC | 1 cut(s) | 212 |
| BfuI | GTATCC | 1 cut(s) | 379 |
| BglII | AGATCT | 1 cut(s) | 952 |
| BisI | GCNGC | 3 cut(s) | 192, 215, 297 |
| BlsI | GCNGC | 3 cut(s) | 193, 216, 298 |
| Bme18I | GGWCC | 1 cut(s) | 1104 |
| BmgT120I | GGNCC | 1 cut(s) | 1104 |
| BmiI | GGNNCC | 1 cut(s) | 736 |
| BmsI | GCATC | 1 cut(s) | 391 |
| BpiI | GAAGAC | 1 cut(s) | 113 |
| BpmI | CTGGAG | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 2 cut(s) | 738, 1123 |
| Bse1I | ACTGG | 1 cut(s) | 485 |
| Bse21I | CCTNAGG | 1 cut(s) | 186 |
| Bse3DI | GCAATG | 1 cut(s) | 411 |
| BseDI | CCNNGG | 2 cut(s) | 738, 1123 |
| BseGI | GGATG | 4 cut(s) | 511, 588, 673, 1091 |
| BseMI | GCAATG | 1 cut(s) | 411 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseNI | ACTGG | 1 cut(s) | 485 |
| BseXI | GCAGC | 3 cut(s) | 178, 201, 283 |
| BseYI | CCCAGC | 1 cut(s) | 1063 |
| BsgI | GTGCAG | 1 cut(s) | 177 |
| Bsh1236I | CGCG | 1 cut(s) | 596 |
| BshFI | GGCC | 2 cut(s) | 477, 813 |
| BsiSI | CCGG | 1 cut(s) | 1256 |
| BslFI | GGGAC | 1 cut(s) | 699 |
| BsmAI | GTCTC | 1 cut(s) | 1139 |
| BsmFI | GGGAC | 1 cut(s) | 699 |
| BsnI | GGCC | 2 cut(s) | 477, 813 |
| Bsp1286I | GDGCHC | 1 cut(s) | 737 |
| Bsp143I | GATC | 3 cut(s) | 715, 952, 1252 |
| Bsp19I | CCATGG | 1 cut(s) | 738 |
| BspACI | CCGC | 2 cut(s) | 682, 945 |
| BspANI | GGCC | 2 cut(s) | 477, 813 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BspFNI | CGCG | 1 cut(s) | 596 |
| BspLI | GGNNCC | 1 cut(s) | 736 |
| BspMAI | CTGCAG | 2 cut(s) | 219, 1201 |
| BspMI | ACCTGC | 1 cut(s) | 212 |
| BspPI | GGATC | 1 cut(s) | 1247 |
| BsrDI | GCAATG | 1 cut(s) | 411 |
| BsrI | ACTGG | 1 cut(s) | 485 |
| BssECI | CCNNGG | 2 cut(s) | 738, 1123 |
| BssMI | GATC | 3 cut(s) | 715, 952, 1252 |
| BssT1I | CCWWGG | 1 cut(s) | 738 |
| Bst4CI | ACNGT | 5 cut(s) | 32, 293, 332, 677, 1272 |
| BstC8I | GCNNGC | 1 cut(s) | 219 |
| BstDEI | CTNAG | 3 cut(s) | 186, 311, 1239 |
| BstDSI | CCRYGG | 1 cut(s) | 738 |
| BstF5I | GGATG | 4 cut(s) | 511, 588, 673, 1091 |
| BstFNI | CGCG | 1 cut(s) | 596 |
| BstKTI | GATC | 3 cut(s) | 718, 955, 1255 |
| BstMAI | GTCTC | 1 cut(s) | 1139 |
| BstMBI | GATC | 3 cut(s) | 715, 952, 1252 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 474 |
| BstSFI | CTRYAG | 4 cut(s) | 215, 355, 837, 1197 |
| BstUI | CGCG | 1 cut(s) | 596 |
| BstV1I | GCAGC | 3 cut(s) | 178, 201, 283 |
| BstV2I | GAAGAC | 1 cut(s) | 113 |
| BstX2I | RGATCY | 2 cut(s) | 952, 1252 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1101 |
| BstYI | RGATCY | 2 cut(s) | 952, 1252 |
| Bsu36I | CCTNAGG | 1 cut(s) | 186 |
| BsuI | GTATCC | 1 cut(s) | 379 |
| BsuRI | GGCC | 2 cut(s) | 477, 813 |
| BtgI | CCRYGG | 1 cut(s) | 738 |
| BtsCI | GGATG | 4 cut(s) | 511, 588, 673, 1091 |
| BtsIMutI | CAGTG | 4 cut(s) | 28, 298, 478, 1268 |
| BveI | ACCTGC | 1 cut(s) | 212 |
| Cac8I | GCNNGC | 1 cut(s) | 219 |
| Cfr13I | GGNCC | 1 cut(s) | 1104 |
| CseI | GACGC | 2 cut(s) | 602, 1211 |
| Csp6I | GTAC | 1 cut(s) | 33 |
| CviAII | CATG | 5 cut(s) | 277, 301, 613, 739, 1152 |
| CviQI | GTAC | 1 cut(s) | 33 |
| DdeI | CTNAG | 3 cut(s) | 186, 311, 1239 |
| DpnI | GATC | 3 cut(s) | 717, 954, 1254 |
| DpnII | GATC | 3 cut(s) | 715, 952, 1252 |
| Eco130I | CCWWGG | 1 cut(s) | 738 |
| Eco24I | GRGCYC | 1 cut(s) | 737 |
| Eco47I | GGWCC | 1 cut(s) | 1104 |
| Eco81I | CCTNAGG | 1 cut(s) | 186 |
| EcoT14I | CCWWGG | 1 cut(s) | 738 |
| EcoT38I | GRGCYC | 1 cut(s) | 737 |
| ErhI | CCWWGG | 1 cut(s) | 738 |
| FaeI | CATG | 5 cut(s) | 280, 304, 616, 742, 1155 |
| FaqI | GGGAC | 1 cut(s) | 699 |
| FatI | CATG | 5 cut(s) | 276, 300, 612, 738, 1151 |
| FauI | CCCGC | 1 cut(s) | 675 |
| Fnu4HI | GCNGC | 3 cut(s) | 192, 215, 297 |
| FokI | GGATG | 4 cut(s) | 518, 595, 680, 1098 |
| FriOI | GRGCYC | 1 cut(s) | 737 |
| Fsp4HI | GCNGC | 3 cut(s) | 192, 215, 297 |
| FspBI | CTAG | 1 cut(s) | 392 |
| GluI | GCNGC | 3 cut(s) | 192, 215, 297 |
| GsaI | CCCAGC | 1 cut(s) | 1067 |
| GsuI | CTGGAG | 1 cut(s) | 411 |
| HaeIII | GGCC | 2 cut(s) | 477, 813 |
| HapII | CCGG | 1 cut(s) | 1256 |
| HgaI | GACGC | 2 cut(s) | 602, 1211 |
| Hin1II | CATG | 5 cut(s) | 280, 304, 616, 742, 1155 |
| HincII | GTYRAC | 1 cut(s) | 610 |
| HindII | GTYRAC | 1 cut(s) | 610 |
| HinfI | GANTC | 3 cut(s) | 619, 941, 1280 |
| HpaII | CCGG | 1 cut(s) | 1256 |
| HphI | GGTGA | 4 cut(s) | 130, 136, 196, 535 |
| Hpy166II | GTNNAC | 5 cut(s) | 246, 592, 610, 898, 1022 |
| Hpy188I | TCNGA | 2 cut(s) | 753, 1124 |
| Hpy188III | TCNNGA | 4 cut(s) | 428, 857, 1172, 1284 |
| Hpy8I | GTNNAC | 5 cut(s) | 246, 592, 610, 898, 1022 |
| HpyAV | CCTTC | 3 cut(s) | 151, 556, 908 |
| HpyCH4III | ACNGT | 5 cut(s) | 32, 293, 332, 677, 1272 |
| HpyCH4IV | ACGT | 1 cut(s) | 432 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 474 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 311, 1239 |
| HpySE526I | ACGT | 1 cut(s) | 432 |
| Hsp92II | CATG | 5 cut(s) | 280, 304, 616, 742, 1155 |
| Kzo9I | GATC | 3 cut(s) | 715, 952, 1252 |
| LmnI | GCTCC | 2 cut(s) | 25, 740 |
| Lsp1109I | GCAGC | 3 cut(s) | 178, 201, 283 |
| LweI | GCATC | 1 cut(s) | 391 |
| MaeI | CTAG | 1 cut(s) | 392 |
| MaeII | ACGT | 1 cut(s) | 432 |
| MaeIII | GTNAC | 6 cut(s) | 436, 541, 671, 758, 818, 1266 |
| MalI | GATC | 3 cut(s) | 717, 954, 1254 |
| MboI | GATC | 3 cut(s) | 715, 952, 1252 |
| MboII | GAAGA | 5 cut(s) | 100, 113, 127, 328, 335 |
| MflI | RGATCY | 2 cut(s) | 952, 1252 |
| MhlI | GDGCHC | 1 cut(s) | 737 |
| MluCI | AATT | 7 cut(s) | 15, 104, 113, 305, 848, 936, 1217 |
| MmeI | TCCRAC | 2 cut(s) | 483, 1082 |
| MnlI | CCTC | 5 cut(s) | 181, 410, 691, 1070, 1118 |
| MroXI | GAANNNNTTC | 2 cut(s) | 852, 1167 |
| MseI | TTAA | 6 cut(s) | 39, 456, 744, 771, 1133, 1274 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 1010 |
| MspI | CCGG | 1 cut(s) | 1256 |
| MvnI | CGCG | 1 cut(s) | 596 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 474 |
| NcoI | CCATGG | 1 cut(s) | 738 |
| NdeII | GATC | 3 cut(s) | 715, 952, 1252 |
| NlaIII | CATG | 5 cut(s) | 280, 304, 616, 742, 1155 |
| NlaIV | GGNNCC | 1 cut(s) | 736 |
| NmuCI | GTSAC | 2 cut(s) | 541, 1266 |
| PdmI | GAANNNNTTC | 2 cut(s) | 852, 1167 |
| PfeI | GAWTC | 3 cut(s) | 619, 941, 1280 |
| PflFI | GACNNNGTC | 1 cut(s) | 1026 |
| PkrI | GCNGC | 3 cut(s) | 193, 216, 298 |
| PshBI | ATTAAT | 1 cut(s) | 456 |
| PspFI | CCCAGC | 1 cut(s) | 1063 |
| PspN4I | GGNNCC | 1 cut(s) | 736 |
| PspPI | GGNCC | 1 cut(s) | 1104 |
| PstI | CTGCAG | 2 cut(s) | 219, 1201 |
| PsuI | RGATCY | 2 cut(s) | 952, 1252 |
| PsyI | GACNNNGTC | 1 cut(s) | 1026 |
| RsaI | GTAC | 1 cut(s) | 34 |
| RsaNI | GTAC | 1 cut(s) | 33 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 1010 |
| SaqAI | TTAA | 6 cut(s) | 39, 456, 744, 771, 1133, 1274 |
| SatI | GCNGC | 3 cut(s) | 192, 215, 297 |
| Sau3AI | GATC | 3 cut(s) | 715, 952, 1252 |
| Sau96I | GGNCC | 1 cut(s) | 1104 |
| SduI | GDGCHC | 1 cut(s) | 737 |
| SfaNI | GCATC | 1 cut(s) | 391 |
| SfcI | CTRYAG | 4 cut(s) | 215, 355, 837, 1197 |
| SinI | GGWCC | 1 cut(s) | 1104 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 1010 |
| SpeI | ACTAGT | 1 cut(s) | 391 |
| Sse9I | AATT | 7 cut(s) | 15, 104, 113, 305, 848, 936, 1217 |
| SsiI | CCGC | 2 cut(s) | 682, 945 |
| SspMI | CTAG | 1 cut(s) | 392 |
| StyI | CCWWGG | 1 cut(s) | 738 |
| TaaI | ACNGT | 5 cut(s) | 32, 293, 332, 677, 1272 |
| TaiI | ACGT | 1 cut(s) | 435 |
| TasI | AATT | 7 cut(s) | 15, 104, 113, 305, 848, 936, 1217 |
| TatI | WGTACW | 1 cut(s) | 32 |
| TfiI | GAWTC | 3 cut(s) | 619, 941, 1280 |
| Tru1I | TTAA | 6 cut(s) | 39, 456, 744, 771, 1133, 1274 |
| Tru9I | TTAA | 6 cut(s) | 39, 456, 744, 771, 1133, 1274 |
| TscAI | CASTG | 4 cut(s) | 35, 298, 485, 1275 |
| TseFI | GTSAC | 2 cut(s) | 541, 1266 |
| TseI | GCWGC | 3 cut(s) | 191, 214, 296 |
| Tsp45I | GTSAC | 2 cut(s) | 541, 1266 |
| TspDTI | ATGAA | 1 cut(s) | 522 |
| TspRI | CASTG | 4 cut(s) | 35, 298, 485, 1275 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1026 |
| VpaK11BI | GGWCC | 1 cut(s) | 1104 |
| VspI | ATTAAT | 1 cut(s) | 456 |
| XmnI | GAANNNNTTC | 2 cut(s) | 852, 1167 |
| XspI | CTAG | 1 cut(s) | 392 |