Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 4 - 36 | 8.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 7.4e-13 | PPR repeat family |
| PPR_1 | PF12854 | 40 - 72 | 3.7e-11 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 4.8e-15 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 4.1e-09 | PPR repeat |
| PPR_3 | PF13812 | 66 - 122 | 1.2e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 79 - 124 | 1.3e-14 | PPR repeat family |
| PPR | PF01535 | 82 - 111 | 3.2e-06 | PPR repeat |
| PPR_1 | PF12854 | 83 - 106 | 4.6e-06 | PPR repeat |
| PPR_1 | PF12854 | 123 - 155 | 8.7e-15 | PPR repeat |
| PPR_3 | PF13812 | 123 - 172 | 1.2e-08 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 127 - 176 | 7.2e-18 | PPR repeat family |
| PPR | PF01535 | 131 - 160 | 1.3e-09 | PPR repeat |
| PPR_1 | PF12854 | 158 - 191 | 2e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 668 |
| AccIII | TCCGGA | 2 cut(s) | 22, 484 |
| AclWI | GGATC | 2 cut(s) | 33, 638 |
| AcsI | RAATTY | 1 cut(s) | 830 |
| AcuI | CTGAAG | 1 cut(s) | 459 |
| AfaI | GTAC | 1 cut(s) | 250 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 326 |
| AgsI | TTSAA | 7 cut(s) | 40, 113, 125, 310, 563, 856, 885 |
| AjnI | CCWGG | 1 cut(s) | 45 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 185, 217, 600, 632 |
| AluBI | AGCT | 2 cut(s) | 723, 909 |
| AluI | AGCT | 2 cut(s) | 723, 909 |
| Alw26I | GTCTC | 1 cut(s) | 462 |
| AlwI | GGATC | 2 cut(s) | 33, 638 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 912 |
| Aor13HI | TCCGGA | 2 cut(s) | 22, 484 |
| AoxI | GGCC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 2 cut(s) | 477, 906 |
| ApoI | RAATTY | 1 cut(s) | 830 |
| AspLEI | GCGC | 1 cut(s) | 668 |
| AspS9I | GGNCC | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 1 cut(s) | 839 |
| AvaII | GGWCC | 1 cut(s) | 495 |
| BbsI | GAAGAC | 1 cut(s) | 193 |
| BbvI | GCAGC | 1 cut(s) | 464 |
| BccI | CCATC | 4 cut(s) | 67, 205, 362, 482 |
| BciT130I | CCWGG | 1 cut(s) | 47 |
| BciVI | GTATCC | 1 cut(s) | 787 |
| BcoDI | GTCTC | 1 cut(s) | 462 |
| BfaI | CTAG | 1 cut(s) | 173 |
| BfmI | CTRYAG | 1 cut(s) | 588 |
| BfuI | GTATCC | 1 cut(s) | 787 |
| BisI | GCNGC | 2 cut(s) | 478, 907 |
| BlsI | GCNGC | 2 cut(s) | 479, 908 |
| Bme1390I | CCNGG | 1 cut(s) | 47 |
| Bme18I | GGWCC | 1 cut(s) | 495 |
| BmgT120I | GGNCC | 1 cut(s) | 495 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmrFI | CCNGG | 1 cut(s) | 47 |
| BmsI | GCATC | 4 cut(s) | 583, 605, 800, 878 |
| BpiI | GAAGAC | 1 cut(s) | 193 |
| BpmI | CTGGAG | 1 cut(s) | 717 |
| Bsa29I | ATCGAT | 1 cut(s) | 288 |
| BsaAI | YACGTR | 1 cut(s) | 775 |
| BsaJI | CCNNGG | 3 cut(s) | 228, 514, 630 |
| BsaWI | WCCGGW | 2 cut(s) | 22, 484 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 326 |
| Bse1I | ACTGG | 1 cut(s) | 734 |
| BseAI | TCCGGA | 2 cut(s) | 22, 484 |
| BseBI | CCWGG | 1 cut(s) | 47 |
| BseCI | ATCGAT | 1 cut(s) | 288 |
| BseDI | CCNNGG | 3 cut(s) | 228, 514, 630 |
| BseGI | GGATG | 3 cut(s) | 78, 493, 510 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 326 |
| BseMII | CTCAG | 1 cut(s) | 446 |
| BseNI | ACTGG | 1 cut(s) | 734 |
| BseXI | GCAGC | 1 cut(s) | 464 |
| Bsh1236I | CGCG | 1 cut(s) | 668 |
| BshFI | GGCC | 1 cut(s) | 191 |
| BshVI | ATCGAT | 1 cut(s) | 288 |
| BsiSI | CCGG | 3 cut(s) | 23, 485, 647 |
| BslFI | GGGAC | 2 cut(s) | 342, 567 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 326 |
| BsmAI | GTCTC | 1 cut(s) | 462 |
| BsmFI | GGGAC | 2 cut(s) | 342, 567 |
| BsnI | GGCC | 1 cut(s) | 191 |
| Bsp13I | TCCGGA | 2 cut(s) | 22, 484 |
| Bsp143I | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| Bsp19I | CCATGG | 1 cut(s) | 228 |
| BspANI | GGCC | 1 cut(s) | 191 |
| BspCNI | CTCAG | 1 cut(s) | 447 |
| BspDI | ATCGAT | 1 cut(s) | 288 |
| BspEI | TCCGGA | 2 cut(s) | 22, 484 |
| BspFNI | CGCG | 1 cut(s) | 668 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspMAI | CTGCAG | 1 cut(s) | 592 |
| BspPI | GGATC | 2 cut(s) | 33, 638 |
| BspQI | GCTCTTC | 1 cut(s) | 665 |
| BsrI | ACTGG | 1 cut(s) | 734 |
| BssECI | CCNNGG | 3 cut(s) | 228, 514, 630 |
| BssMI | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| BssT1I | CCWWGG | 2 cut(s) | 228, 630 |
| Bst2UI | CCWGG | 1 cut(s) | 47 |
| Bst4CI | ACNGT | 4 cut(s) | 161, 167, 696, 898 |
| Bst6I | CTCTTC | 2 cut(s) | 665, 688 |
| BstBAI | YACGTR | 1 cut(s) | 775 |
| BstDEI | CTNAG | 2 cut(s) | 323, 455 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstF5I | GGATG | 3 cut(s) | 78, 493, 510 |
| BstFNI | CGCG | 1 cut(s) | 668 |
| BstHHI | GCGC | 1 cut(s) | 668 |
| BstKTI | GATC | 6 cut(s) | 28, 208, 292, 646, 676, 880 |
| BstMAI | GTCTC | 1 cut(s) | 462 |
| BstMBI | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| BstNI | CCWGG | 1 cut(s) | 47 |
| BstSCI | CCNGG | 1 cut(s) | 45 |
| BstSFI | CTRYAG | 1 cut(s) | 588 |
| BstSNI | TACGTA | 1 cut(s) | 775 |
| BstUI | CGCG | 1 cut(s) | 668 |
| BstV1I | GCAGC | 1 cut(s) | 464 |
| BstV2I | GAAGAC | 1 cut(s) | 193 |
| BstX2I | RGATCY | 2 cut(s) | 25, 643 |
| BstYI | RGATCY | 2 cut(s) | 25, 643 |
| Bsu15I | ATCGAT | 1 cut(s) | 288 |
| BsuI | GTATCC | 1 cut(s) | 787 |
| BsuRI | GGCC | 1 cut(s) | 191 |
| BsuTUI | ATCGAT | 1 cut(s) | 288 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtsCI | GGATG | 3 cut(s) | 78, 493, 510 |
| BtsI | GCAGTG | 1 cut(s) | 820 |
| BtsIMutI | CAGTG | 2 cut(s) | 163, 820 |
| CaiI | CAGNNNCTG | 1 cut(s) | 912 |
| CfoI | GCGC | 1 cut(s) | 668 |
| Cfr13I | GGNCC | 1 cut(s) | 495 |
| ClaI | ATCGAT | 1 cut(s) | 288 |
| Csp6I | GTAC | 1 cut(s) | 249 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 769, 804 |
| CviAII | CATG | 3 cut(s) | 229, 410, 543 |
| CviQI | GTAC | 1 cut(s) | 249 |
| DdeI | CTNAG | 2 cut(s) | 323, 455 |
| DpnI | GATC | 6 cut(s) | 27, 207, 291, 645, 675, 879 |
| DpnII | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| Eam1104I | CTCTTC | 2 cut(s) | 665, 688 |
| EarI | CTCTTC | 2 cut(s) | 665, 688 |
| Eco105I | TACGTA | 1 cut(s) | 775 |
| Eco130I | CCWWGG | 2 cut(s) | 228, 630 |
| Eco47I | GGWCC | 1 cut(s) | 495 |
| Eco57I | CTGAAG | 1 cut(s) | 459 |
| EcoRII | CCWGG | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 2 cut(s) | 228, 630 |
| EcoT22I | ATGCAT | 2 cut(s) | 598, 872 |
| ErhI | CCWWGG | 2 cut(s) | 228, 630 |
| FaeI | CATG | 3 cut(s) | 232, 413, 546 |
| FaqI | GGGAC | 2 cut(s) | 342, 567 |
| FatI | CATG | 3 cut(s) | 228, 409, 542 |
| Fnu4HI | GCNGC | 2 cut(s) | 478, 907 |
| FokI | GGATG | 3 cut(s) | 85, 497, 500 |
| Fsp4HI | GCNGC | 2 cut(s) | 478, 907 |
| FspBI | CTAG | 1 cut(s) | 173 |
| GlaI | GCGC | 1 cut(s) | 667 |
| GluI | GCNGC | 2 cut(s) | 478, 907 |
| GsuI | CTGGAG | 1 cut(s) | 717 |
| HaeIII | GGCC | 1 cut(s) | 191 |
| HapII | CCGG | 3 cut(s) | 23, 485, 647 |
| HhaI | GCGC | 1 cut(s) | 668 |
| Hin1II | CATG | 3 cut(s) | 232, 413, 546 |
| Hin6I | GCGC | 1 cut(s) | 666 |
| HinP1I | GCGC | 1 cut(s) | 666 |
| HinfI | GANTC | 2 cut(s) | 109, 406 |
| HpaII | CCGG | 3 cut(s) | 23, 485, 647 |
| HphI | GGTGA | 1 cut(s) | 839 |
| Hpy188I | TCNGA | 4 cut(s) | 102, 210, 243, 515 |
| Hpy188III | TCNNGA | 5 cut(s) | 23, 338, 485, 563, 885 |
| HpyAV | CCTTC | 1 cut(s) | 46 |
| HpyCH4III | ACNGT | 4 cut(s) | 161, 167, 696, 898 |
| HpyCH4IV | ACGT | 1 cut(s) | 774 |
| HpyCH4V | TGCA | 6 cut(s) | 590, 596, 791, 870, 891, 906 |
| HpyF3I | CTNAG | 2 cut(s) | 323, 455 |
| HpySE526I | ACGT | 1 cut(s) | 774 |
| Hsp92II | CATG | 3 cut(s) | 232, 413, 546 |
| HspAI | GCGC | 1 cut(s) | 666 |
| Kpn2I | TCCGGA | 2 cut(s) | 22, 484 |
| Kzo9I | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| LguI | GCTCTTC | 1 cut(s) | 665 |
| LmnI | GCTCC | 2 cut(s) | 230, 914 |
| LpnPI | CCDG | 8 cut(s) | 32, 36, 59, 278, 498, 660, 747, 877 |
| Lsp1109I | GCAGC | 1 cut(s) | 464 |
| LweI | GCATC | 4 cut(s) | 583, 605, 800, 878 |
| MaeI | CTAG | 1 cut(s) | 173 |
| MaeII | ACGT | 1 cut(s) | 774 |
| MaeIII | GTNAC | 5 cut(s) | 136, 161, 741, 770, 815 |
| MalI | GATC | 6 cut(s) | 27, 207, 291, 645, 675, 879 |
| MboI | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| MboII | GAAGA | 3 cut(s) | 193, 652, 675 |
| MflI | RGATCY | 2 cut(s) | 25, 643 |
| MluCI | AATT | 5 cut(s) | 130, 145, 608, 785, 830 |
| MmeI | TCCRAC | 1 cut(s) | 473 |
| MnlI | CCTC | 6 cut(s) | 61, 181, 330, 381, 509, 851 |
| Mph1103I | ATGCAT | 2 cut(s) | 598, 872 |
| MroI | TCCGGA | 2 cut(s) | 22, 484 |
| MseI | TTAA | 4 cut(s) | 234, 261, 434, 524 |
| MslI | CAYNNNNRTG | 1 cut(s) | 101 |
| MspI | CCGG | 3 cut(s) | 23, 485, 647 |
| MspR9I | CCNGG | 1 cut(s) | 47 |
| MvaI | CCWGG | 1 cut(s) | 47 |
| MvnI | CGCG | 1 cut(s) | 668 |
| NcoI | CCATGG | 1 cut(s) | 228 |
| NdeII | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| NlaIII | CATG | 3 cut(s) | 232, 413, 546 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 2 cut(s) | 161, 815 |
| NsiI | ATGCAT | 2 cut(s) | 598, 872 |
| PciSI | GCTCTTC | 1 cut(s) | 665 |
| PfeI | GAWTC | 2 cut(s) | 109, 406 |
| PkrI | GCNGC | 2 cut(s) | 479, 908 |
| Ppu21I | YACGTR | 1 cut(s) | 775 |
| Psp6I | CCWGG | 1 cut(s) | 45 |
| PspGI | CCWGG | 1 cut(s) | 45 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PspPI | GGNCC | 1 cut(s) | 495 |
| PstI | CTGCAG | 1 cut(s) | 592 |
| PstNI | CAGNNNCTG | 1 cut(s) | 912 |
| PsuI | RGATCY | 2 cut(s) | 25, 643 |
| RsaI | GTAC | 1 cut(s) | 250 |
| RsaNI | GTAC | 1 cut(s) | 249 |
| RseI | CAYNNNNRTG | 1 cut(s) | 101 |
| SapI | GCTCTTC | 1 cut(s) | 665 |
| SaqAI | TTAA | 4 cut(s) | 234, 261, 434, 524 |
| SatI | GCNGC | 2 cut(s) | 478, 907 |
| Sau3AI | GATC | 6 cut(s) | 25, 205, 289, 643, 673, 877 |
| Sau96I | GGNCC | 1 cut(s) | 495 |
| ScrFI | CCNGG | 1 cut(s) | 47 |
| SetI | ASST | 8 cut(s) | 16, 38, 130, 500, 725, 777, 905, 911 |
| SfaNI | GCATC | 4 cut(s) | 583, 605, 800, 878 |
| SfcI | CTRYAG | 1 cut(s) | 588 |
| SinI | GGWCC | 1 cut(s) | 495 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 101 |
| SnaBI | TACGTA | 1 cut(s) | 775 |
| Sse9I | AATT | 5 cut(s) | 130, 145, 608, 785, 830 |
| SspMI | CTAG | 1 cut(s) | 173 |
| StyD4I | CCNGG | 1 cut(s) | 45 |
| StyI | CCWWGG | 2 cut(s) | 228, 630 |
| TaaI | ACNGT | 4 cut(s) | 161, 167, 696, 898 |
| TaiI | ACGT | 1 cut(s) | 777 |
| TaqI | TCGA | 2 cut(s) | 204, 288 |
| TasI | AATT | 5 cut(s) | 130, 145, 608, 785, 830 |
| TfiI | GAWTC | 2 cut(s) | 109, 406 |
| Tru1I | TTAA | 4 cut(s) | 234, 261, 434, 524 |
| Tru9I | TTAA | 4 cut(s) | 234, 261, 434, 524 |
| TscAI | CASTG | 2 cut(s) | 170, 820 |
| TseFI | GTSAC | 2 cut(s) | 161, 815 |
| TseI | GCWGC | 2 cut(s) | 477, 906 |
| Tsp45I | GTSAC | 2 cut(s) | 161, 815 |
| TspDTI | ATGAA | 3 cut(s) | 398, 549, 675 |
| TspGWI | ACGGA | 1 cut(s) | 279 |
| TspRI | CASTG | 2 cut(s) | 170, 820 |
| VpaK11BI | GGWCC | 1 cut(s) | 495 |
| XapI | RAATTY | 1 cut(s) | 830 |
| XspI | CTAG | 1 cut(s) | 173 |
| Zsp2I | ATGCAT | 2 cut(s) | 598, 872 |