Pentacotripeptide-repeat region of PRORP
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 55 | 3.8e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 36 | 2e-13 | PPR repeat |
| TPR_24 | PF23276 | 4 - 64 | 5e-06 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 8 - 57 | 1.7e-17 | PPR repeat family |
| PPR | PF01535 | 11 - 41 | 6.5e-09 | PPR repeat |
| PPR_1 | PF12854 | 70 - 99 | 1.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 72 - 120 | 6.2e-14 | PPR repeat family |
| PPR_2 | PF13041 | 145 - 188 | 1.6e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 358 |
| AcyI | GRCGYC | 1 cut(s) | 189 |
| AfaI | GTAC | 1 cut(s) | 181 |
| AluBI | AGCT | 4 cut(s) | 93, 443, 479, 497 |
| AluI | AGCT | 4 cut(s) | 93, 443, 479, 497 |
| AoxI | GGCC | 1 cut(s) | 84 |
| ApeKI | GCWGC | 1 cut(s) | 535 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 117, 284, 309 |
| BbvI | GCAGC | 1 cut(s) | 522 |
| BccI | CCATC | 3 cut(s) | 103, 200, 582 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 69 |
| BglII | AGATCT | 1 cut(s) | 205 |
| BisI | GCNGC | 1 cut(s) | 536 |
| BlsI | GCNGC | 1 cut(s) | 537 |
| BmsI | GCATC | 4 cut(s) | 148, 321, 340, 577 |
| BsaHI | GRCGYC | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 2 cut(s) | 52, 183 |
| Bse1I | ACTGG | 1 cut(s) | 303 |
| BseDI | CCNNGG | 2 cut(s) | 52, 183 |
| BseGI | GGATG | 3 cut(s) | 118, 375, 574 |
| BseNI | ACTGG | 1 cut(s) | 303 |
| BseXI | GCAGC | 1 cut(s) | 522 |
| BshFI | GGCC | 1 cut(s) | 86 |
| BsnI | GGCC | 1 cut(s) | 86 |
| Bsp143I | GATC | 3 cut(s) | 3, 205, 490 |
| Bsp19I | CCATGG | 1 cut(s) | 52 |
| BspACI | CCGC | 1 cut(s) | 358 |
| BspANI | GGCC | 1 cut(s) | 86 |
| BsrI | ACTGG | 1 cut(s) | 303 |
| BssECI | CCNNGG | 2 cut(s) | 52, 183 |
| BssMI | GATC | 3 cut(s) | 3, 205, 490 |
| BssNI | GRCGYC | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 2 cut(s) | 52, 183 |
| Bst4CI | ACNGT | 1 cut(s) | 236 |
| BstACI | GRCGYC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 2 cut(s) | 95, 385 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstDSI | CCRYGG | 1 cut(s) | 52 |
| BstF5I | GGATG | 3 cut(s) | 118, 375, 574 |
| BstKTI | GATC | 3 cut(s) | 6, 208, 493 |
| BstMBI | GATC | 3 cut(s) | 3, 205, 490 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 69, 389, 398, 544 |
| BstV1I | GCAGC | 1 cut(s) | 522 |
| BstX2I | RGATCY | 1 cut(s) | 205 |
| BstYI | RGATCY | 1 cut(s) | 205 |
| BsuRI | GGCC | 1 cut(s) | 86 |
| BtgI | CCRYGG | 1 cut(s) | 52 |
| BtsCI | GGATG | 3 cut(s) | 118, 375, 574 |
| Cac8I | GCNNGC | 2 cut(s) | 95, 385 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 180 |
| CviAII | CATG | 3 cut(s) | 53, 245, 428 |
| CviJI | RGCY | 7 cut(s) | 86, 93, 383, 443, 468, 479, 497 |
| CviKI_1 | RGCY | 7 cut(s) | 86, 93, 383, 443, 468, 479, 497 |
| CviQI | GTAC | 1 cut(s) | 180 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DpnI | GATC | 3 cut(s) | 5, 207, 492 |
| DpnII | GATC | 3 cut(s) | 3, 205, 490 |
| Eco130I | CCWWGG | 2 cut(s) | 52, 183 |
| EcoT14I | CCWWGG | 2 cut(s) | 52, 183 |
| ErhI | CCWWGG | 2 cut(s) | 52, 183 |
| FaeI | CATG | 3 cut(s) | 56, 248, 431 |
| FatI | CATG | 3 cut(s) | 52, 244, 427 |
| FauNDI | CATATG | 1 cut(s) | 251 |
| Fnu4HI | GCNGC | 1 cut(s) | 536 |
| FokI | GGATG | 3 cut(s) | 125, 382, 561 |
| Fsp4HI | GCNGC | 1 cut(s) | 536 |
| GluI | GCNGC | 1 cut(s) | 536 |
| HaeIII | GGCC | 1 cut(s) | 86 |
| HgaI | GACGC | 1 cut(s) | 197 |
| Hin1I | GRCGYC | 1 cut(s) | 189 |
| Hin1II | CATG | 3 cut(s) | 56, 248, 431 |
| HindIII | AAGCTT | 2 cut(s) | 91, 495 |
| HphI | GGTGA | 4 cut(s) | 25, 117, 284, 309 |
| Hpy166II | GTNNAC | 1 cut(s) | 19 |
| Hpy188III | TCNNGA | 2 cut(s) | 215, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 19 |
| HpyAV | CCTTC | 2 cut(s) | 110, 505 |
| HpyCH4III | ACNGT | 1 cut(s) | 236 |
| HpyCH4V | TGCA | 4 cut(s) | 137, 168, 255, 547 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 69, 389, 398, 544 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| Hsp92I | GRCGYC | 1 cut(s) | 189 |
| Hsp92II | CATG | 3 cut(s) | 56, 248, 431 |
| Kzo9I | GATC | 3 cut(s) | 3, 205, 490 |
| LpnPI | CCDG | 5 cut(s) | 54, 228, 284, 293, 447 |
| Lsp1109I | GCAGC | 1 cut(s) | 522 |
| LweI | GCATC | 4 cut(s) | 148, 321, 340, 577 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 3 cut(s) | 5, 207, 492 |
| MboI | GATC | 3 cut(s) | 3, 205, 490 |
| MflI | RGATCY | 1 cut(s) | 205 |
| MluCI | AATT | 4 cut(s) | 153, 240, 327, 516 |
| MnlI | CCTC | 5 cut(s) | 5, 76, 157, 415, 495 |
| MseI | TTAA | 5 cut(s) | 47, 99, 143, 239, 462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 265 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 69, 389, 398, 544 |
| NcoI | CCATGG | 1 cut(s) | 52 |
| NdeI | CATATG | 1 cut(s) | 251 |
| NdeII | GATC | 3 cut(s) | 3, 205, 490 |
| NlaIII | CATG | 3 cut(s) | 56, 248, 431 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| PkrI | GCNGC | 1 cut(s) | 537 |
| PsuI | RGATCY | 1 cut(s) | 205 |
| RsaI | GTAC | 1 cut(s) | 181 |
| RsaNI | GTAC | 1 cut(s) | 180 |
| RseI | CAYNNNNRTG | 1 cut(s) | 265 |
| SaqAI | TTAA | 5 cut(s) | 47, 99, 143, 239, 462 |
| SatI | GCNGC | 1 cut(s) | 536 |
| Sau3AI | GATC | 3 cut(s) | 3, 205, 490 |
| SfaNI | GCATC | 4 cut(s) | 148, 321, 340, 577 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 265 |
| Sse9I | AATT | 4 cut(s) | 153, 240, 327, 516 |
| SsiI | CCGC | 1 cut(s) | 358 |
| SspI | AATATT | 1 cut(s) | 405 |
| StyI | CCWWGG | 2 cut(s) | 52, 183 |
| TaaI | ACNGT | 1 cut(s) | 236 |
| TasI | AATT | 4 cut(s) | 153, 240, 327, 516 |
| Tru1I | TTAA | 5 cut(s) | 47, 99, 143, 239, 462 |
| Tru9I | TTAA | 5 cut(s) | 47, 99, 143, 239, 462 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| TseI | GCWGC | 1 cut(s) | 535 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 4 cut(s) | 129, 233, 309, 435 |