pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 60 - 109 | 3.7e-08 | PPR repeat family |
| PPR_long | PF17177 | 79 - 207 | 3.2e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 121 - 154 | 1.4e-08 | PPR repeat family |
| PPR_3 | PF13812 | 128 - 186 | 4e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 137 - 168 | 9.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 140 - 188 | 9.5e-14 | PPR repeat family |
| PPR_1 | PF12854 | 174 - 203 | 2.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 175 - 224 | 2.1e-13 | PPR repeat family |
| PPR | PF01535 | 178 - 207 | 2.2e-08 | PPR repeat |
| TPR_24 | PF23276 | 191 - 306 | 5.1e-07 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 199 - 255 | 8.1e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 207 - 239 | 3.4e-07 | PPR repeat |
| PPR_2 | PF13041 | 211 - 259 | 2.3e-18 | PPR repeat family |
| PPR | PF01535 | 214 - 241 | 2.6e-07 | PPR repeat |
| PPR_1 | PF12854 | 242 - 265 | 6e-09 | PPR repeat |
| PPR_3 | PF13812 | 270 - 326 | 3.7e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 282 - 330 | 2.9e-15 | PPR repeat family |
| PPR_1 | PF12854 | 312 - 344 | 2.2e-10 | PPR repeat |
| PPR | PF01535 | 320 - 349 | 6.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 324 - 364 | 1.6e-08 | PPR repeat family |
| PPR_1 | PF12854 | 347 - 380 | 1.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 354 - 393 | 8.6e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 903 |
| AcsI | RAATTY | 2 cut(s) | 699, 1015 |
| AgsI | TTSAA | 9 cut(s) | 226, 331, 436, 509, 706, 872, 899, 1007, 1130 |
| AjnI | CCWGG | 1 cut(s) | 357 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 456, 488, 1167, 1199 |
| AluBI | AGCT | 4 cut(s) | 348, 377, 887, 1217 |
| AluI | AGCT | 4 cut(s) | 348, 377, 887, 1217 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 205 |
| AoxI | GGCC | 1 cut(s) | 361 |
| ApeKI | GCWGC | 1 cut(s) | 1214 |
| ApoI | RAATTY | 2 cut(s) | 699, 1015 |
| AseI | ATTAAT | 1 cut(s) | 657 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 159, 729, 1017, 1125 |
| AspLEI | GCGC | 1 cut(s) | 1228 |
| AspS9I | GGNCC | 1 cut(s) | 361 |
| AsuHPI | GGTGA | 1 cut(s) | 112 |
| BanII | GRGCYC | 1 cut(s) | 623 |
| BbsI | GAAGAC | 1 cut(s) | 5 |
| BbvI | GCAGC | 1 cut(s) | 1226 |
| BccI | CCATC | 6 cut(s) | 93, 251, 463, 548, 758, 814 |
| BceAI | ACGGC | 1 cut(s) | 163 |
| BciT130I | CCWGG | 1 cut(s) | 359 |
| BclI | TGATCA | 1 cut(s) | 685 |
| BfaI | CTAG | 2 cut(s) | 75, 114 |
| BfoI | RGCGCY | 1 cut(s) | 1229 |
| BisI | GCNGC | 1 cut(s) | 1215 |
| BlsI | GCNGC | 1 cut(s) | 1216 |
| Bme1390I | CCNGG | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 1 cut(s) | 361 |
| BmiI | GGNNCC | 1 cut(s) | 622 |
| BmrFI | CCNGG | 1 cut(s) | 359 |
| BmrI | ACTGGG | 1 cut(s) | 215 |
| BmsI | GCATC | 4 cut(s) | 124, 1150, 1172, 1201 |
| BmuI | ACTGGG | 1 cut(s) | 215 |
| BpiI | GAAGAC | 1 cut(s) | 5 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| BpuEI | CTTGAG | 1 cut(s) | 149 |
| BsaJI | CCNNGG | 5 cut(s) | 271, 358, 489, 624, 1081 |
| Bse118I | RCCGGY | 1 cut(s) | 363 |
| Bse1I | ACTGG | 2 cut(s) | 210, 865 |
| BseBI | CCWGG | 1 cut(s) | 359 |
| BseDI | CCNNGG | 5 cut(s) | 271, 358, 489, 624, 1081 |
| BseGI | GGATG | 5 cut(s) | 139, 243, 474, 559, 1216 |
| BseMII | CTCAG | 3 cut(s) | 120, 212, 1013 |
| BseNI | ACTGG | 2 cut(s) | 210, 865 |
| BseRI | GAGGAG | 1 cut(s) | 94 |
| BseXI | GCAGC | 1 cut(s) | 1226 |
| BseYI | CCCAGC | 1 cut(s) | 887 |
| BsgI | GTGCAG | 1 cut(s) | 222 |
| BshFI | GGCC | 1 cut(s) | 363 |
| BsiSI | CCGG | 1 cut(s) | 364 |
| BsnI | GGCC | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 1 cut(s) | 623 |
| Bsp143I | GATC | 2 cut(s) | 601, 685 |
| Bsp19I | CCATGG | 1 cut(s) | 624 |
| BspACI | CCGC | 1 cut(s) | 903 |
| BspANI | GGCC | 1 cut(s) | 363 |
| BspCNI | CTCAG | 3 cut(s) | 119, 211, 1014 |
| BspHI | TCATGA | 2 cut(s) | 391, 1241 |
| BspLI | GGNNCC | 1 cut(s) | 622 |
| BsrFI | RCCGGY | 1 cut(s) | 363 |
| BsrI | ACTGG | 2 cut(s) | 210, 865 |
| BssAI | RCCGGY | 1 cut(s) | 363 |
| BssECI | CCNNGG | 5 cut(s) | 271, 358, 489, 624, 1081 |
| BssMI | GATC | 2 cut(s) | 601, 685 |
| BssT1I | CCWWGG | 1 cut(s) | 624 |
| Bst2UI | CCWGG | 1 cut(s) | 359 |
| Bst4CI | ACNGT | 4 cut(s) | 490, 542, 563, 742 |
| BstDEI | CTNAG | 5 cut(s) | 106, 198, 812, 1022, 1197 |
| BstDSI | CCRYGG | 3 cut(s) | 271, 489, 624 |
| BstF5I | GGATG | 5 cut(s) | 139, 243, 474, 559, 1216 |
| BstH2I | RGCGCY | 1 cut(s) | 1229 |
| BstHHI | GCGC | 1 cut(s) | 1228 |
| BstKTI | GATC | 2 cut(s) | 604, 688 |
| BstMBI | GATC | 2 cut(s) | 601, 685 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1223 |
| BstNI | CCWGG | 1 cut(s) | 359 |
| BstSCI | CCNGG | 1 cut(s) | 357 |
| BstV1I | GCAGC | 1 cut(s) | 1226 |
| BstV2I | GAAGAC | 1 cut(s) | 5 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 490, 835 |
| BsuRI | GGCC | 1 cut(s) | 363 |
| BtgI | CCRYGG | 3 cut(s) | 271, 489, 624 |
| BtsCI | GGATG | 5 cut(s) | 139, 243, 474, 559, 1216 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 858 |
| CaiI | CAGNNNCTG | 1 cut(s) | 205 |
| CciI | TCATGA | 2 cut(s) | 391, 1241 |
| CfoI | GCGC | 1 cut(s) | 1228 |
| Cfr10I | RCCGGY | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 1 cut(s) | 361 |
| CseI | GACGC | 1 cut(s) | 704 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 742, 777 |
| CviAII | CATG | 9 cut(s) | 58, 142, 152, 392, 499, 625, 992, 1110, 1242 |
| DdeI | CTNAG | 5 cut(s) | 106, 198, 812, 1022, 1197 |
| DpnI | GATC | 2 cut(s) | 603, 687 |
| DpnII | GATC | 2 cut(s) | 601, 685 |
| DraI | TTTAAA | 1 cut(s) | 256 |
| Eco130I | CCWWGG | 1 cut(s) | 624 |
| Eco24I | GRGCYC | 1 cut(s) | 623 |
| Eco32I | GATATC | 1 cut(s) | 913 |
| EcoRII | CCWGG | 1 cut(s) | 357 |
| EcoRV | GATATC | 1 cut(s) | 913 |
| EcoT14I | CCWWGG | 1 cut(s) | 624 |
| EcoT22I | ATGCAT | 1 cut(s) | 1165 |
| EcoT38I | GRGCYC | 1 cut(s) | 623 |
| ErhI | CCWWGG | 1 cut(s) | 624 |
| FaeI | CATG | 9 cut(s) | 61, 145, 155, 395, 502, 628, 995, 1113, 1245 |
| FatI | CATG | 9 cut(s) | 57, 141, 151, 391, 498, 624, 991, 1109, 1241 |
| FbaI | TGATCA | 1 cut(s) | 685 |
| Fnu4HI | GCNGC | 1 cut(s) | 1215 |
| FokI | GGATG | 5 cut(s) | 146, 230, 481, 566, 1223 |
| FriOI | GRGCYC | 1 cut(s) | 623 |
| Fsp4HI | GCNGC | 1 cut(s) | 1215 |
| FspBI | CTAG | 2 cut(s) | 75, 114 |
| GlaI | GCGC | 1 cut(s) | 1227 |
| GluI | GCNGC | 1 cut(s) | 1215 |
| GsaI | CCCAGC | 1 cut(s) | 891 |
| HaeII | RGCGCY | 1 cut(s) | 1229 |
| HaeIII | GGCC | 1 cut(s) | 363 |
| HapII | CCGG | 1 cut(s) | 364 |
| HgaI | GACGC | 1 cut(s) | 704 |
| HhaI | GCGC | 1 cut(s) | 1228 |
| Hin1II | CATG | 9 cut(s) | 61, 145, 155, 395, 502, 628, 995, 1113, 1245 |
| Hin6I | GCGC | 1 cut(s) | 1226 |
| HinP1I | GCGC | 1 cut(s) | 1226 |
| HincII | GTYRAC | 2 cut(s) | 212, 496 |
| HindII | GTYRAC | 2 cut(s) | 212, 496 |
| HinfI | GANTC | 6 cut(s) | 117, 331, 403, 505, 899, 1238 |
| HpaII | CCGG | 1 cut(s) | 364 |
| HphI | GGTGA | 1 cut(s) | 112 |
| Hpy166II | GTNNAC | 4 cut(s) | 212, 496, 856, 980 |
| Hpy188I | TCNGA | 3 cut(s) | 201, 1023, 1082 |
| Hpy188III | TCNNGA | 6 cut(s) | 75, 128, 392, 734, 1130, 1242 |
| Hpy8I | GTNNAC | 4 cut(s) | 212, 496, 856, 980 |
| Hpy99I | CGWCG | 1 cut(s) | 720 |
| HpyAV | CCTTC | 3 cut(s) | 458, 673, 866 |
| HpyCH4III | ACNGT | 4 cut(s) | 490, 542, 563, 742 |
| HpyCH4V | TGCA | 7 cut(s) | 239, 669, 774, 882, 1062, 1163, 1214 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1223 |
| HpyF3I | CTNAG | 5 cut(s) | 106, 198, 812, 1022, 1197 |
| Hsp92II | CATG | 9 cut(s) | 61, 145, 155, 395, 502, 628, 995, 1113, 1245 |
| HspAI | GCGC | 1 cut(s) | 1226 |
| Ksp22I | TGATCA | 1 cut(s) | 685 |
| Kzo9I | GATC | 2 cut(s) | 601, 685 |
| LmnI | GCTCC | 3 cut(s) | 170, 286, 626 |
| Lsp1109I | GCAGC | 1 cut(s) | 1226 |
| LweI | GCATC | 4 cut(s) | 124, 1150, 1172, 1201 |
| MaeI | CTAG | 2 cut(s) | 75, 114 |
| MaeIII | GTNAC | 6 cut(s) | 118, 384, 427, 557, 644, 742 |
| MalI | GATC | 2 cut(s) | 603, 687 |
| MboI | GATC | 2 cut(s) | 601, 685 |
| MboII | GAAGA | 2 cut(s) | 5, 907 |
| MhlI | GDGCHC | 1 cut(s) | 623 |
| MluCI | AATT | 9 cut(s) | 52, 221, 276, 699, 833, 894, 1002, 1015, 1175 |
| MlyI | GAGTC | 2 cut(s) | 126, 412 |
| Mph1103I | ATGCAT | 1 cut(s) | 1165 |
| MroXI | GAANNNNTTC | 4 cut(s) | 159, 729, 1017, 1125 |
| MseI | TTAA | 7 cut(s) | 255, 630, 657, 843, 998, 1091, 1232 |
| MslI | CAYNNNNRTG | 1 cut(s) | 968 |
| MspI | CCGG | 1 cut(s) | 364 |
| MspR9I | CCNGG | 1 cut(s) | 359 |
| MvaI | CCWGG | 1 cut(s) | 359 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1223 |
| NcoI | CCATGG | 1 cut(s) | 624 |
| NdeII | GATC | 2 cut(s) | 601, 685 |
| NlaIII | CATG | 9 cut(s) | 61, 145, 155, 395, 502, 628, 995, 1113, 1245 |
| NlaIV | GGNNCC | 1 cut(s) | 622 |
| NmeAIII | GCCGAG | 1 cut(s) | 1133 |
| NmuCI | GTSAC | 2 cut(s) | 118, 427 |
| NsiI | ATGCAT | 1 cut(s) | 1165 |
| PagI | TCATGA | 2 cut(s) | 391, 1241 |
| PdmI | GAANNNNTTC | 4 cut(s) | 159, 729, 1017, 1125 |
| PfeI | GAWTC | 4 cut(s) | 331, 505, 899, 1238 |
| PflFI | GACNNNGTC | 1 cut(s) | 984 |
| PkrI | GCNGC | 1 cut(s) | 1216 |
| PleI | GAGTC | 2 cut(s) | 125, 411 |
| PpsI | GAGTC | 2 cut(s) | 125, 411 |
| PshBI | ATTAAT | 1 cut(s) | 657 |
| Psp6I | CCWGG | 1 cut(s) | 357 |
| PspFI | CCCAGC | 1 cut(s) | 887 |
| PspGI | CCWGG | 1 cut(s) | 357 |
| PspN4I | GGNNCC | 1 cut(s) | 622 |
| PspPI | GGNCC | 1 cut(s) | 361 |
| PstNI | CAGNNNCTG | 1 cut(s) | 205 |
| PsyI | GACNNNGTC | 1 cut(s) | 984 |
| RseI | CAYNNNNRTG | 1 cut(s) | 968 |
| SaqAI | TTAA | 7 cut(s) | 255, 630, 657, 843, 998, 1091, 1232 |
| SatI | GCNGC | 1 cut(s) | 1215 |
| Sau3AI | GATC | 2 cut(s) | 601, 685 |
| Sau96I | GGNCC | 1 cut(s) | 361 |
| SchI | GAGTC | 2 cut(s) | 126, 412 |
| ScrFI | CCNGG | 1 cut(s) | 359 |
| SduI | GDGCHC | 1 cut(s) | 623 |
| SetI | ASST | 9 cut(s) | 350, 379, 386, 412, 684, 877, 889, 1067, 1219 |
| SfaNI | GCATC | 4 cut(s) | 124, 1150, 1172, 1201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 968 |
| SmlI | CTYRAG | 1 cut(s) | 128 |
| SmoI | CTYRAG | 1 cut(s) | 128 |
| Sse9I | AATT | 9 cut(s) | 52, 221, 276, 699, 833, 894, 1002, 1015, 1175 |
| SsiI | CCGC | 1 cut(s) | 903 |
| SspI | AATATT | 1 cut(s) | 847 |
| SspMI | CTAG | 2 cut(s) | 75, 114 |
| StyD4I | CCNGG | 1 cut(s) | 357 |
| StyI | CCWWGG | 1 cut(s) | 624 |
| TaaI | ACNGT | 4 cut(s) | 490, 542, 563, 742 |
| TaqI | TCGA | 1 cut(s) | 97 |
| TasI | AATT | 9 cut(s) | 52, 221, 276, 699, 833, 894, 1002, 1015, 1175 |
| TfiI | GAWTC | 4 cut(s) | 331, 505, 899, 1238 |
| Tru1I | TTAA | 7 cut(s) | 255, 630, 657, 843, 998, 1091, 1232 |
| Tru9I | TTAA | 7 cut(s) | 255, 630, 657, 843, 998, 1091, 1232 |
| TscAI | CASTG | 2 cut(s) | 114, 865 |
| TseFI | GTSAC | 2 cut(s) | 118, 427 |
| TseI | GCWGC | 1 cut(s) | 1214 |
| Tsp45I | GTSAC | 2 cut(s) | 118, 427 |
| TspDTI | ATGAA | 6 cut(s) | 46, 59, 168, 380, 408, 1230 |
| TspGWI | ACGGA | 1 cut(s) | 260 |
| TspRI | CASTG | 2 cut(s) | 114, 865 |
| Tth111I | GACNNNGTC | 1 cut(s) | 984 |
| VspI | ATTAAT | 1 cut(s) | 657 |
| XapI | RAATTY | 2 cut(s) | 699, 1015 |
| XbaI | TCTAGA | 1 cut(s) | 74 |
| XmnI | GAANNNNTTC | 4 cut(s) | 159, 729, 1017, 1125 |
| XspI | CTAG | 2 cut(s) | 75, 114 |
| Zsp2I | ATGCAT | 1 cut(s) | 1165 |